Wall clock time and date at job start Tue Mar 31 2020 13:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35731 * 116.99999 * 2 1 4 4 C 1.41856 * 126.79168 * 180.27959 * 3 2 1 5 5 C 1.36658 * 103.81391 * 180.13907 * 4 3 2 6 6 C 1.47548 * 126.87668 * 179.87846 * 5 4 3 7 7 O 1.21572 * 119.99970 * 354.21192 * 6 5 4 8 8 N 1.34775 * 119.99781 * 174.48553 * 6 5 4 9 9 C 1.46925 * 120.62973 * 183.67897 * 8 6 5 10 10 C 1.53634 * 108.54154 * 126.36913 * 9 8 6 11 11 C 1.53033 * 109.23946 * 54.85538 * 10 9 8 12 12 C 1.53009 * 109.44725 * 178.49880 * 11 10 9 13 13 N 1.46505 * 109.46741 * 295.06232 * 12 11 10 14 14 C 1.46499 * 120.00246 * 89.99805 * 13 12 11 15 15 C 1.36936 * 119.99720 * 269.99865 * 13 12 11 16 16 H 1.08007 * 119.99768 * 139.50846 * 15 13 12 17 17 C 1.38813 * 120.00211 * 319.50387 * 15 13 12 18 18 N 1.31619 * 120.00018 * 160.32831 * 17 15 13 19 19 Si 1.86796 * 120.00020 * 340.33308 * 17 15 13 20 20 H 1.48501 * 109.47028 * 95.25245 * 19 17 15 21 21 H 1.48498 * 109.47345 * 215.25024 * 19 17 15 22 22 H 1.48498 * 109.47261 * 335.25504 * 19 17 15 23 23 C 1.53039 * 109.54290 * 298.50829 * 11 10 9 24 24 C 1.46924 * 120.63187 * 3.95743 * 8 6 5 25 25 O 1.34654 * 106.24195 * 359.61158 * 5 4 3 26 26 N 1.20877 * 111.63371 * 0.26811 * 25 5 4 27 27 H 1.09000 * 109.47129 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47701 * 299.99658 * 1 2 3 29 29 H 1.08999 * 109.47437 * 60.00018 * 1 2 3 30 30 H 1.08000 * 128.09110 * 0.04814 * 4 3 2 31 31 H 1.08997 * 109.58852 * 246.19880 * 9 8 6 32 32 H 1.08994 * 109.58402 * 6.62801 * 9 8 6 33 33 H 1.08996 * 109.63081 * 294.86201 * 10 9 8 34 34 H 1.08994 * 109.42877 * 174.72432 * 10 9 8 35 35 H 1.09005 * 109.46360 * 58.53454 * 11 10 9 36 36 H 1.08999 * 109.47042 * 55.05597 * 12 11 10 37 37 H 1.08999 * 109.47471 * 175.06691 * 12 11 10 38 38 H 1.09000 * 109.46696 * 92.93955 * 14 13 12 39 39 H 1.09000 * 109.47394 * 212.94152 * 14 13 12 40 40 H 1.09005 * 109.47077 * 332.94492 * 14 13 12 41 41 H 0.96993 * 120.00135 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.49477 * 301.41912 * 23 11 10 43 43 H 1.08994 * 109.52492 * 181.33595 * 23 11 10 44 44 H 1.09006 * 109.58916 * 353.37618 * 24 8 6 45 45 H 1.08999 * 109.59026 * 113.65551 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 6 3.4430 1.4506 -0.0055 5 6 3.5389 2.8138 0.0003 6 6 4.7784 3.6143 0.0006 7 8 5.8575 3.0636 0.1014 8 7 4.7138 4.9563 -0.1054 9 6 5.9407 5.7606 -0.1875 10 6 5.8564 6.6544 -1.4342 11 6 4.5679 7.4781 -1.3780 12 6 4.4973 8.3975 -2.5990 13 7 5.5870 9.3749 -2.5378 14 6 6.8819 9.0675 -3.1500 15 6 5.3950 10.5758 -1.9084 16 1 6.1772 10.9933 -1.2916 17 6 4.1952 11.2565 -2.0631 18 7 3.8451 12.1793 -1.1923 19 14 3.0774 10.8629 -3.5070 20 1 2.0495 9.8785 -3.0833 21 1 2.4107 12.1063 -3.9703 22 1 3.8834 10.2909 -4.6154 23 6 3.3596 6.5389 -1.3766 24 6 3.4155 5.6434 -0.1350 25 8 2.2757 3.2802 -0.0003 26 7 1.4684 2.3805 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.2441 0.7263 -0.0113 31 1 6.0316 6.3805 0.7044 32 1 6.8051 5.1013 -0.2666 33 1 5.8527 6.0337 -2.3302 34 1 6.7157 7.3244 -1.4588 35 1 4.5610 8.0800 -0.4693 36 1 4.5931 7.8030 -3.5075 37 1 3.5407 8.9199 -2.6057 38 1 6.9014 9.4504 -4.1704 39 1 7.6779 9.5358 -2.5710 40 1 7.0299 7.9877 -3.1643 41 1 3.0066 12.6547 -1.3001 42 1 3.3794 5.9194 -2.2732 43 1 2.4416 7.1263 -1.3605 44 1 2.6132 4.9068 -0.1793 45 1 3.3035 6.2519 0.7623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753362752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:21 Heat of formation + Delta-G solvation = 15.701372 kcal Electronic energy + Delta-G solvation = -28126.875372 eV Core-core repulsion = 24149.328641 eV Total energy + Delta-G solvation = -3977.546731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.18123 -41.32684 -39.95976 -39.23353 -37.33143 -34.59397 -34.34859 -33.49224 -33.08504 -31.78931 -29.09218 -28.61080 -27.90962 -25.88395 -24.83852 -24.21907 -23.73890 -22.62062 -22.02570 -20.88337 -19.26711 -19.14656 -18.67508 -18.18819 -17.48077 -17.26667 -17.00643 -16.67561 -16.26109 -16.00009 -15.86654 -15.40878 -15.21458 -15.19000 -14.89810 -14.72574 -14.43999 -14.11514 -13.75621 -13.65262 -13.21681 -13.11776 -12.95911 -12.92750 -12.65945 -12.58483 -12.34844 -12.17012 -12.08304 -11.84725 -11.74138 -11.57026 -11.20716 -11.07345 -11.06006 -10.60129 -10.49415 -9.84543 -8.63605 -8.16231 -5.58042 -0.43983 0.92971 1.30026 1.31409 1.43375 1.52540 1.54030 1.76086 2.08551 2.44151 2.90457 3.09901 3.28504 3.47309 3.62349 3.90281 3.91207 3.96243 4.04705 4.13543 4.24285 4.26686 4.37223 4.48013 4.53941 4.58956 4.63498 4.68781 4.75594 4.76571 4.87567 4.93962 4.99358 5.01074 5.10024 5.16891 5.19926 5.25624 5.52779 5.61397 5.82009 6.00357 6.07008 6.21892 6.64623 6.94331 7.05505 7.67454 8.10915 9.03514 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.003087 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.942110 B = 9068.516962 C = 9980.521481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.289 6.289 3 C 0.204 3.796 4 C -0.147 4.147 5 C -0.060 4.060 6 C 0.605 3.395 7 O -0.541 6.541 8 N -0.587 5.587 9 C 0.117 3.883 10 C -0.114 4.114 11 C -0.099 4.099 12 C 0.139 3.861 13 N -0.624 5.624 14 C 0.119 3.881 15 C -0.254 4.254 16 H 0.039 0.961 17 C -0.019 4.019 18 N -0.951 5.951 19 Si 0.944 3.056 20 H -0.268 1.268 21 H -0.312 1.312 22 H -0.264 1.264 23 C -0.125 4.125 24 C 0.100 3.900 25 O 0.113 5.887 26 N -0.403 5.403 27 H 0.137 0.863 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.006 0.994 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.262 0.738 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 -24.814 1.407 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.195 6.195 3 C 0.007 3.993 4 C -0.170 4.170 5 C -0.125 4.125 6 C 0.391 3.609 7 O -0.419 6.419 8 N -0.318 5.318 9 C -0.004 4.004 10 C -0.152 4.152 11 C -0.120 4.120 12 C 0.014 3.986 13 N -0.348 5.348 14 C -0.025 4.025 15 C -0.384 4.384 16 H 0.056 0.944 17 C -0.215 4.215 18 N -0.595 5.595 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.242 1.242 22 H -0.188 1.188 23 C -0.164 4.164 24 C -0.023 4.023 25 O 0.052 5.948 26 N -0.131 5.131 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.223 0.777 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.128 0.872 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.410 -24.873 1.478 25.497 hybrid contribution -0.298 0.380 -0.448 0.659 sum -5.709 -24.493 1.030 25.170 Atomic orbital electron populations 1.23384 0.74825 1.06317 1.02525 1.86228 1.24497 1.19702 1.89093 1.22013 0.90826 0.86074 1.00385 1.22422 0.94858 0.94781 1.04910 1.23881 0.86710 0.93997 1.07904 1.16657 0.85181 0.81663 0.77407 1.90847 1.27759 1.71305 1.52024 1.48140 1.09480 1.04733 1.69469 1.21877 0.86022 0.93483 0.99037 1.21975 0.98549 0.97320 0.97330 1.21579 0.94955 0.95629 0.99843 1.21283 0.90634 0.90218 0.96470 1.44151 1.11270 1.14407 1.65018 1.21297 0.86679 0.99444 0.95069 1.18636 1.01138 0.96991 1.21612 0.94358 1.26119 1.00090 0.96024 0.99248 1.69971 1.24062 1.29076 1.36436 0.85839 0.79037 0.75816 0.82013 1.19413 1.24152 1.18839 1.21903 0.98737 0.97528 0.98188 1.22331 0.83633 0.96787 0.99514 1.85054 1.11938 1.28736 1.69094 1.73973 1.16907 0.97257 1.24956 0.84503 0.92055 0.92112 0.77680 0.90423 0.88610 0.91266 0.90168 0.92742 0.92302 0.95082 0.97563 0.94515 0.91221 0.92903 0.90671 0.90457 0.87184 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.73 113.37 1.22 1.48 16 2 O -0.29 -5.13 10.57 -90.54 -0.96 -6.08 16 3 C 0.20 4.18 8.00 85.78 0.69 4.87 16 4 C -0.15 -2.88 10.97 22.80 0.25 -2.63 16 5 C -0.06 -1.29 6.99 24.36 0.17 -1.12 16 6 C 0.61 14.85 7.69 86.70 0.67 15.51 16 7 O -0.54 -15.73 16.34 -3.94 -0.06 -15.79 16 8 N -0.59 -13.81 2.97 -821.82 -2.44 -16.25 16 9 C 0.12 2.83 6.45 86.51 0.56 3.38 16 10 C -0.11 -3.03 4.42 30.82 0.14 -2.89 16 11 C -0.10 -3.13 2.36 -10.77 -0.03 -3.16 16 12 C 0.14 5.32 3.96 86.38 0.34 5.66 16 13 N -0.62 -27.70 2.26 -726.90 -1.64 -29.34 16 14 C 0.12 4.37 9.66 127.77 1.23 5.60 16 15 C -0.25 -13.94 9.92 84.03 0.83 -13.10 16 16 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 17 C -0.02 -1.05 5.33 84.86 0.45 -0.60 16 18 N -0.95 -58.37 13.97 21.65 0.30 -58.07 16 19 Si 0.94 45.21 25.00 68.60 1.71 46.93 16 20 H -0.27 -11.91 6.71 99.48 0.67 -11.24 16 21 H -0.31 -15.37 7.11 99.48 0.71 -14.67 16 22 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 23 C -0.12 -3.16 5.36 30.67 0.16 -3.00 16 24 C 0.10 2.19 6.33 86.36 0.55 2.73 16 25 O 0.11 2.45 7.73 65.72 0.51 2.96 16 26 N -0.40 -8.90 11.50 -172.01 -1.98 -10.87 16 27 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.21 3.20 8.06 -2.91 -0.02 3.18 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 2.28 7.03 -2.39 -0.02 2.27 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.30 5.83 -2.39 -0.01 2.29 16 35 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.06 2.00 8.07 -2.39 -0.02 1.98 16 37 H 0.03 1.34 3.45 -2.39 -0.01 1.33 16 38 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.04 1.35 8.06 -2.39 -0.02 1.33 16 40 H 0.07 2.05 6.09 -2.38 -0.01 2.04 16 41 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.11 2.22 3.81 -48.08 -0.18 2.03 16 45 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -68.07 357.61 3.47 -64.59 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.79 Total: 9.19 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 7.23 Total: 12.74 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -5.75 Total: -114.54 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.51 Total: -18.91 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.71 Total: 46.93 kcal Total: -68.07 3.47 -64.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753362752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.294 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds