Wall clock time and date at job start Tue Mar 31 2020 14:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38131 * 120.03394 * 2 1 4 4 C 1.38268 * 120.06959 * 180.25652 * 3 2 1 5 5 C 1.38304 * 120.14559 * 359.49040 * 4 3 2 6 6 C 1.38078 * 120.07378 * 0.25252 * 5 4 3 7 7 C 1.50702 * 120.04101 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46684 * 300.00412 * 7 6 5 9 9 C 1.53002 * 109.47162 * 59.99745 * 7 6 5 10 10 C 1.38871 * 120.03975 * 179.74691 * 2 1 3 11 11 N 1.39845 * 120.07134 * 359.97147 * 10 2 1 12 12 C 1.34775 * 120.00244 * 303.23677 * 11 10 2 13 13 O 1.21556 * 120.00236 * 5.55425 * 12 11 10 14 14 C 1.47858 * 119.99662 * 185.55735 * 12 11 10 15 15 C 1.39932 * 120.02827 * 359.72344 * 14 12 11 16 16 C 1.38327 * 120.35177 * 179.76515 * 15 14 12 17 17 C 1.37748 * 120.41498 * 0.51027 * 16 15 14 18 18 C 1.40749 * 120.04532 * 359.74793 * 17 16 15 19 19 C 1.41437 * 120.17943 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00177 * 25.22218 * 19 18 17 21 21 C 1.39938 * 120.00288 * 205.22496 * 19 18 17 22 22 N 1.30834 * 119.99460 * 16.81828 * 21 19 18 23 23 Si 1.86793 * 120.00239 * 196.81398 * 21 19 18 24 24 H 1.48502 * 109.46673 * 90.00460 * 23 21 19 25 25 H 1.48499 * 109.47144 * 209.99957 * 23 21 19 26 26 H 1.48494 * 109.47327 * 330.00328 * 23 21 19 27 27 C 1.39010 * 120.02276 * 179.97438 * 14 12 11 28 28 H 1.09003 * 109.47210 * 277.43433 * 1 2 3 29 29 H 1.08994 * 109.47440 * 37.43283 * 1 2 3 30 30 H 1.09000 * 109.46831 * 157.43747 * 1 2 3 31 31 H 1.07995 * 119.96861 * 0.02562 * 3 2 1 32 32 H 1.07998 * 119.92586 * 179.76307 * 4 3 2 33 33 H 1.08000 * 119.96235 * 180.23490 * 5 4 3 34 34 H 1.08992 * 109.47861 * 180.02562 * 7 6 5 35 35 H 1.08991 * 109.47547 * 59.99509 * 8 7 6 36 36 H 1.09006 * 109.47074 * 180.02562 * 8 7 6 37 37 H 1.09003 * 109.46951 * 299.98954 * 8 7 6 38 38 H 1.08995 * 109.46971 * 60.00497 * 9 7 6 39 39 H 1.08994 * 109.47222 * 180.02562 * 9 7 6 40 40 H 1.09000 * 109.46811 * 300.00507 * 9 7 6 41 41 H 0.97000 * 119.99482 * 123.22804 * 11 10 2 42 42 H 1.07993 * 119.82004 * 0.02562 * 15 14 12 43 43 H 1.07999 * 119.78699 * 180.25587 * 16 15 14 44 44 H 1.08008 * 119.97980 * 179.76425 * 17 16 15 45 45 H 0.97000 * 119.99361 * 179.97438 * 22 21 19 46 46 H 1.08005 * 120.20580 * 359.95771 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5810 1.1967 -0.0054 5 6 4.2763 0.0012 -0.0001 6 6 3.5913 -1.1977 0.0053 7 6 4.3497 -2.4999 0.0116 8 6 5.2301 -2.5833 -1.2370 9 6 5.2293 -2.5718 1.2614 10 6 2.2021 -1.2022 0.0053 11 7 1.5053 -2.4146 0.0113 12 6 0.6152 -2.6755 0.9891 13 8 0.3433 -1.8192 1.8079 14 6 -0.0304 -4.0035 1.0659 15 6 0.2779 -4.9878 0.1203 16 6 -0.3185 -6.2340 0.1887 17 6 -1.2302 -6.5173 1.1817 18 6 -1.5570 -5.5381 2.1385 19 6 -2.4924 -5.8261 3.1596 20 1 -2.6523 -6.8471 3.4732 21 6 -3.2107 -4.7880 3.7636 22 7 -3.2756 -3.6156 3.1867 23 14 -4.0769 -5.0765 5.3932 24 1 -3.1524 -4.7523 6.5092 25 1 -5.2774 -4.2064 5.4764 26 1 -4.4893 -6.4997 5.4895 27 6 -0.9481 -4.2734 2.0746 28 1 -0.3634 0.1330 1.0190 29 1 -0.3634 0.8160 -0.6246 30 1 -0.3633 -0.9490 -0.3943 31 1 1.6584 2.1311 0.0004 32 1 4.1192 2.1330 -0.0092 33 1 5.3563 0.0053 -0.0005 34 1 3.6447 -3.3311 0.0148 35 1 5.9352 -1.7522 -1.2407 36 1 5.7784 -3.5255 -1.2327 37 1 4.6035 -2.5322 -2.1275 38 1 4.6021 -2.5124 2.1509 39 1 5.7781 -3.5135 1.2658 40 1 5.9344 -1.7406 1.2578 41 1 1.6624 -3.0677 -0.6885 42 1 0.9884 -4.7747 -0.6645 43 1 -0.0707 -6.9883 -0.5434 44 1 -1.6945 -7.4914 1.2262 45 1 -3.7738 -2.8961 3.6052 46 1 -1.1917 -3.5156 2.8046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042200987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:03 Heat of formation + Delta-G solvation = -7.324086 kcal Electronic energy + Delta-G solvation = -27087.066597 eV Core-core repulsion = 23519.370670 eV Total energy + Delta-G solvation = -3567.695927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53681 -38.58631 -37.01799 -35.60576 -34.31912 -33.72305 -31.66220 -30.39349 -29.49807 -28.77538 -27.17478 -26.61776 -25.35076 -23.42423 -22.98623 -21.25260 -20.90330 -19.70096 -19.28989 -17.96436 -17.31273 -16.08872 -15.92795 -15.33618 -15.15602 -14.74383 -14.29569 -14.19018 -13.83974 -13.65585 -13.60425 -13.30073 -13.20365 -12.98357 -12.72144 -12.55546 -12.32178 -12.11138 -11.95518 -11.73508 -11.62367 -11.27957 -11.19732 -11.13306 -11.08484 -10.77994 -10.71467 -10.62346 -10.52142 -10.05368 -9.75384 -9.50725 -9.26162 -9.08169 -8.42142 -8.07691 -7.66248 -7.56442 -6.83372 -4.45861 1.41901 1.51351 2.15379 2.77553 3.05850 3.08924 3.12468 3.58801 3.74028 3.88939 3.91080 4.59483 4.64518 4.79909 5.08864 5.14776 5.17957 5.31389 5.40610 5.51556 5.56103 5.57192 5.61968 5.72151 5.77052 5.81967 5.93606 6.01108 6.01912 6.07713 6.11762 6.19185 6.22068 6.23590 6.54403 6.58321 6.60482 6.66185 6.77483 6.84810 6.93159 6.95788 7.16153 7.29259 7.32791 7.63750 7.69390 7.86234 7.99293 8.13389 8.45767 8.76196 8.78392 8.86685 10.11314 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.003614 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.182007 B = 7745.787051 C = 8676.336933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.067 4.067 3 C -0.118 4.118 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.086 4.086 7 C -0.059 4.059 8 C -0.141 4.141 9 C -0.140 4.140 10 C 0.150 3.850 11 N -0.684 5.684 12 C 0.565 3.435 13 O -0.524 6.524 14 C -0.128 4.128 15 C -0.218 4.218 16 C -0.096 4.096 17 C -0.210 4.210 18 C 0.099 3.901 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.784 5.784 23 Si 0.911 3.089 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.089 4.089 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.406 0.594 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.285 0.715 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.350 5.746 -7.063 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.088 4.088 7 C -0.077 4.077 8 C -0.199 4.199 9 C -0.198 4.198 10 C 0.057 3.943 11 N -0.334 5.334 12 C 0.357 3.643 13 O -0.400 6.400 14 C -0.131 4.131 15 C -0.239 4.239 16 C -0.115 4.115 17 C -0.230 4.230 18 C 0.097 3.903 19 C -0.488 4.488 20 H 0.100 0.900 21 C -0.146 4.146 22 N -0.408 5.408 23 Si 0.735 3.265 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.186 1.186 27 C -0.109 4.109 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.244 0.756 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.996 6.546 -6.420 15.099 hybrid contribution -0.363 -0.343 0.290 0.578 sum 11.633 6.203 -6.130 14.539 Atomic orbital electron populations 1.20832 0.90584 1.01836 1.03131 1.19995 0.96647 0.91925 0.98367 1.20862 0.94107 0.97085 1.01599 1.21019 0.94151 0.97724 1.01564 1.20704 0.99347 0.91461 1.01839 1.19842 0.91959 0.95459 1.01515 1.20073 0.96984 0.94851 0.95839 1.21850 0.99346 1.01679 0.96990 1.21806 0.99209 1.01475 0.97274 1.17341 0.89731 0.85843 1.01419 1.43507 1.42775 1.17646 1.29459 1.18927 0.77451 0.88391 0.79559 1.90714 1.61438 1.47556 1.40309 1.19400 1.01755 0.91705 1.00267 1.20331 1.06780 0.94943 1.01796 1.20428 0.97544 0.95488 0.98009 1.21120 1.03997 1.00191 0.97711 1.17596 0.90799 0.90882 0.91061 1.19608 1.18456 0.94724 1.16062 0.90040 1.25959 0.95698 0.94456 0.98465 1.69782 1.31847 1.03002 1.36183 0.86260 0.78917 0.79535 0.81771 1.19137 1.20193 1.18559 1.21644 0.93529 0.98480 0.97256 0.89554 0.92655 0.91937 0.86131 0.86340 0.86222 0.90118 0.92570 0.92404 0.92663 0.92423 0.92428 0.92674 0.75585 0.89318 0.88847 0.88567 0.90434 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 8.23 36.00 0.30 -1.51 16 2 C -0.07 -1.09 5.48 -104.43 -0.57 -1.66 16 3 C -0.12 -1.60 9.72 -39.61 -0.39 -1.99 16 4 C -0.13 -1.51 10.04 -39.55 -0.40 -1.91 16 5 C -0.11 -1.40 8.71 -39.62 -0.35 -1.74 16 6 C -0.09 -1.18 4.80 -104.43 -0.50 -1.69 16 7 C -0.06 -0.71 3.05 -91.77 -0.28 -0.99 16 8 C -0.14 -1.35 9.01 37.16 0.33 -1.02 16 9 C -0.14 -1.60 9.01 37.16 0.33 -1.27 16 10 C 0.15 2.43 5.81 -83.72 -0.49 1.95 16 11 N -0.68 -11.67 3.67 -10.71 -0.04 -11.71 16 12 C 0.56 12.04 6.30 -12.32 -0.08 11.96 16 13 O -0.52 -12.62 13.27 5.32 0.07 -12.55 16 14 C -0.13 -2.94 5.87 -105.04 -0.62 -3.56 16 15 C -0.22 -4.47 9.55 -38.91 -0.37 -4.84 16 16 C -0.10 -2.01 10.01 -39.73 -0.40 -2.40 16 17 C -0.21 -4.89 9.78 -38.81 -0.38 -5.27 16 18 C 0.10 2.57 5.57 -106.87 -0.59 1.98 16 19 C -0.46 -11.90 9.05 -37.73 -0.34 -12.24 16 20 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 21 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 22 N -0.78 -20.41 10.95 55.55 0.61 -19.80 16 23 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 27 C -0.09 -2.32 8.23 -38.44 -0.32 -2.64 16 28 H 0.09 1.64 7.05 -51.93 -0.37 1.27 16 29 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.06 1.15 6.39 -51.93 -0.33 0.82 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.18 7.10 -52.49 -0.37 0.81 16 34 H 0.08 1.06 6.58 -51.93 -0.34 0.72 16 35 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.55 7.39 -51.93 -0.38 0.17 16 41 H 0.41 6.02 6.35 -40.82 -0.26 5.76 16 42 H 0.09 1.49 6.39 -52.49 -0.34 1.16 16 43 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 45 H 0.28 6.82 8.30 -40.82 -0.34 6.49 16 46 H 0.13 3.79 5.76 -52.48 -0.30 3.49 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -28.64 371.68 -10.41 -39.04 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.43 Total: 12.94 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -5.19 Total: -27.10 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.57 Total: -31.52 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.64 -10.41 -39.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042200987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.718 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds