Wall clock time and date at job start Tue Mar 31 2020 13:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38252 * 120.00451 * 2 1 4 4 C 1.38210 * 120.00485 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99825 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99957 * 359.95719 * 5 4 3 7 7 C 1.38216 * 119.99727 * 179.72725 * 2 1 3 8 8 C 1.50700 * 120.00174 * 359.97438 * 7 2 1 9 9 C 1.53002 * 109.46825 * 85.00052 * 8 7 2 10 10 H 1.09000 * 109.47369 * 304.99704 * 9 8 7 11 11 C 1.53002 * 109.46917 * 185.00342 * 9 8 7 12 12 N 1.46493 * 109.47214 * 65.00309 * 9 8 7 13 13 C 1.34776 * 120.00147 * 205.00102 * 12 9 8 14 14 O 1.21555 * 119.99839 * 359.97438 * 13 12 9 15 15 C 1.47883 * 120.00440 * 180.02562 * 13 12 9 16 16 C 1.39925 * 120.02329 * 359.71694 * 15 13 12 17 17 C 1.38332 * 120.35818 * 179.72304 * 16 15 13 18 18 C 1.37753 * 120.41000 * 0.55812 * 17 16 15 19 19 C 1.40747 * 120.03858 * 359.72260 * 18 17 16 20 20 C 1.41442 * 120.17411 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99877 * 24.44185 * 20 19 18 22 22 C 1.39944 * 119.99699 * 204.43938 * 20 19 18 23 23 N 1.30819 * 120.00237 * 17.88176 * 22 20 19 24 24 Si 1.86801 * 119.99665 * 197.88139 * 22 20 19 25 25 H 1.48499 * 109.47270 * 59.99925 * 24 22 20 26 26 H 1.48496 * 109.46986 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47022 * 299.99849 * 24 22 20 28 28 C 1.38993 * 120.02879 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47214 * 89.99958 * 1 2 3 30 30 H 1.09007 * 109.47384 * 330.00222 * 1 2 3 31 31 H 1.09001 * 109.47687 * 210.00061 * 1 2 3 32 32 H 1.08005 * 119.99897 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.00568 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00143 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.99610 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.47227 * 204.99880 * 8 7 2 37 37 H 1.09003 * 109.47110 * 325.00019 * 8 7 2 38 38 H 1.09009 * 109.47144 * 299.99937 * 11 9 8 39 39 H 1.08999 * 109.47326 * 59.99588 * 11 9 8 40 40 H 1.08996 * 109.47151 * 180.02562 * 11 9 8 41 41 H 0.96998 * 120.00035 * 24.99845 * 12 9 8 42 42 H 1.08005 * 119.81705 * 359.97438 * 16 15 13 43 43 H 1.07999 * 119.79066 * 180.26297 * 17 16 15 44 44 H 1.07994 * 119.97776 * 179.74130 * 18 17 16 45 45 H 0.96996 * 120.00281 * 180.02562 * 23 22 20 46 46 H 1.07996 * 120.20292 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5805 -1.1971 0.0009 7 6 2.1980 -1.1970 0.0057 8 6 1.4444 -2.5021 0.0125 9 6 1.0800 -2.8880 -1.4225 10 1 0.5302 -2.0711 -1.8900 11 6 0.2089 -4.1457 -1.4068 12 7 2.3040 -3.1512 -2.1832 13 6 2.3070 -3.0133 -3.5239 14 8 1.2939 -2.6711 -4.1019 15 6 3.5424 -3.2796 -4.2919 16 6 4.7102 -3.6689 -3.6267 17 6 5.8681 -3.9252 -4.3387 18 6 5.8883 -3.7892 -5.7094 19 6 4.7249 -3.3929 -6.3953 20 6 4.7423 -3.2528 -7.8027 21 1 5.4653 -3.7985 -8.3907 22 6 3.8226 -2.4071 -8.4331 23 7 3.1919 -1.4941 -7.7402 24 14 3.4955 -2.5821 -10.2639 25 1 2.9811 -3.9462 -10.5467 26 1 2.4884 -1.5755 -10.6852 27 1 4.7576 -2.3634 -11.0153 28 6 3.5459 -3.1381 -5.6746 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 0.8900 0.5138 31 1 -0.3634 -0.8900 0.5138 32 1 1.6583 2.1326 0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.3517 -0.0002 0.0005 35 1 4.1206 -2.1324 0.0013 36 1 2.0695 -3.2802 0.4504 37 1 0.5339 -2.3929 0.6018 38 1 0.7587 -4.9627 -0.9393 39 1 -0.7018 -3.9499 -0.8407 40 1 -0.0503 -4.4209 -2.4291 41 1 3.1123 -3.4246 -1.7220 42 1 4.7063 -3.7737 -2.5517 43 1 6.7631 -4.2292 -3.8163 44 1 6.7973 -3.9870 -6.2579 45 1 2.5542 -0.9082 -8.1771 46 1 2.6479 -2.8342 -6.1920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055557646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:44 Heat of formation + Delta-G solvation = -13.141984 kcal Electronic energy + Delta-G solvation = -26817.544906 eV Core-core repulsion = 23249.596697 eV Total energy + Delta-G solvation = -3567.948210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.92998 -38.95227 -37.10913 -35.64257 -33.74310 -32.99305 -31.88213 -30.81669 -29.52667 -29.28428 -27.33496 -26.13085 -25.29518 -23.18195 -22.03282 -21.31229 -20.89731 -20.20941 -19.49955 -17.71806 -16.47681 -16.16857 -15.99325 -15.23456 -15.06521 -14.99598 -14.65604 -14.29524 -13.84647 -13.74107 -13.56598 -13.19488 -13.08913 -12.84679 -12.75257 -12.48631 -12.45428 -12.25485 -12.09158 -11.93156 -11.68717 -11.61377 -11.14746 -11.08733 -10.96490 -10.84973 -10.74057 -10.69084 -10.47727 -9.99154 -9.67427 -9.19014 -8.95216 -8.72925 -8.64369 -8.46333 -7.59969 -7.49676 -6.78066 -4.39547 1.40364 1.45052 2.25743 2.84282 3.08386 3.10111 3.18187 3.72931 3.79872 3.91168 3.94500 4.64803 4.69711 4.79134 4.93561 4.97186 5.03963 5.20582 5.29135 5.39484 5.50204 5.54296 5.63149 5.64350 5.69582 5.71791 5.75801 5.82221 5.84466 6.06985 6.09918 6.14140 6.25882 6.29662 6.34994 6.52353 6.57394 6.67905 6.74396 6.96837 7.01745 7.05984 7.07460 7.23636 7.40775 7.72849 7.79264 7.95330 8.14595 8.22973 8.52949 8.82272 8.85985 9.03175 10.16566 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003396 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.315095 B = 8243.008279 C = 8326.135108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.083 4.083 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.106 4.106 7 C -0.079 4.079 8 C -0.090 4.090 9 C 0.148 3.852 10 H 0.087 0.913 11 C -0.163 4.163 12 N -0.728 5.728 13 C 0.566 3.434 14 O -0.547 6.547 15 C -0.127 4.127 16 C -0.217 4.217 17 C -0.098 4.098 18 C -0.213 4.213 19 C 0.099 3.901 20 C -0.462 4.462 21 H 0.080 0.920 22 C 0.074 3.926 23 N -0.783 5.783 24 Si 0.910 3.090 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.093 4.093 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.396 0.604 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.285 0.715 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 1.452 16.060 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.124 4.124 7 C -0.079 4.079 8 C -0.128 4.128 9 C 0.043 3.957 10 H 0.105 0.895 11 C -0.221 4.221 12 N -0.381 5.381 13 C 0.357 3.643 14 O -0.426 6.426 15 C -0.130 4.130 16 C -0.237 4.237 17 C -0.116 4.116 18 C -0.233 4.233 19 C 0.097 3.903 20 C -0.490 4.490 21 H 0.099 0.901 22 C -0.145 4.145 23 N -0.407 5.407 24 Si 0.734 3.266 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.113 4.113 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.231 0.769 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.229 1.918 15.621 16.296 hybrid contribution 0.442 -0.005 -0.596 0.742 sum -3.787 1.913 15.025 15.612 Atomic orbital electron populations 1.20875 0.91466 1.02474 1.02672 1.19723 0.95921 0.92696 0.99951 1.20973 0.94314 0.97311 1.01245 1.21094 0.94305 0.98030 1.00498 1.21108 0.99871 0.92558 1.00349 1.20984 0.93469 0.98106 0.99858 1.19622 0.93679 0.94263 1.00354 1.20978 1.00685 0.94371 0.96739 1.20783 0.86720 0.97892 0.90278 0.89532 1.22198 0.99287 0.97768 1.02877 1.45973 1.13214 1.71769 1.07192 1.18806 0.88800 0.75490 0.81252 1.90682 1.34913 1.47257 1.69713 1.19491 0.92112 1.06685 0.94689 1.20313 0.93960 1.12734 0.96662 1.20420 0.96164 1.00636 0.94398 1.21084 0.97413 1.11443 0.93353 1.17588 0.90070 0.89204 0.93450 1.19560 1.14752 1.22941 0.91791 0.90146 1.25956 0.94167 0.93373 1.01022 1.69783 1.19892 1.12388 1.38658 0.86341 0.79022 0.79292 0.81963 1.18710 1.20228 1.18966 1.21633 0.99141 0.99583 0.90957 0.90855 0.91824 0.91273 0.86379 0.86355 0.86182 0.86327 0.90623 0.89402 0.92584 0.92095 0.91697 0.76895 0.89424 0.89008 0.88698 0.90404 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.41 36.00 0.34 -0.86 16 2 C -0.08 -1.03 5.88 -104.63 -0.62 -1.64 16 3 C -0.12 -1.47 9.70 -39.59 -0.38 -1.86 16 4 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 5 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 6 C -0.11 -1.34 9.34 -39.58 -0.37 -1.71 16 7 C -0.08 -0.99 4.89 -104.62 -0.51 -1.50 16 8 C -0.09 -0.96 4.39 -27.88 -0.12 -1.09 16 9 C 0.15 2.05 2.56 -67.93 -0.17 1.88 16 10 H 0.09 1.40 7.37 -51.93 -0.38 1.02 16 11 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 12 N -0.73 -12.07 4.61 -54.74 -0.25 -12.33 16 13 C 0.57 12.49 7.74 -12.31 -0.10 12.39 16 14 O -0.55 -13.83 16.00 5.32 0.09 -13.74 16 15 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 16 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 17 C -0.10 -2.10 10.01 -39.72 -0.40 -2.50 16 18 C -0.21 -5.11 9.78 -38.81 -0.38 -5.49 16 19 C 0.10 2.66 5.57 -106.87 -0.60 2.06 16 20 C -0.46 -12.26 9.05 -37.72 -0.34 -12.60 16 21 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 22 C 0.07 1.89 5.14 -17.34 -0.09 1.81 16 23 N -0.78 -21.06 10.96 55.55 0.61 -20.45 16 24 Si 0.91 18.98 29.60 -169.99 -5.03 13.95 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 27 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 28 C -0.09 -2.51 8.24 -38.44 -0.32 -2.83 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.54 8.09 -51.92 -0.42 0.12 16 31 H 0.07 0.60 6.02 -51.93 -0.31 0.28 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.31 7.98 -52.49 -0.42 0.90 16 36 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.09 0.77 6.16 -51.93 -0.32 0.45 16 38 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.40 5.80 6.34 -40.82 -0.26 5.54 16 42 H 0.09 1.53 6.38 -52.48 -0.33 1.20 16 43 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 46 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -30.82 380.35 -10.86 -41.69 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.52 Total: 13.14 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: -5.48 Total: -27.99 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.36 Total: -32.77 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.82 -10.86 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055557646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.545 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds