Wall clock time and date at job start Tue Mar 31 2020 13:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38252 * 120.00451 * 2 1 4 4 C 1.38210 * 120.00485 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99825 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99957 * 359.95719 * 5 4 3 7 7 C 1.38216 * 119.99727 * 179.72725 * 2 1 3 8 8 C 1.50700 * 120.00174 * 359.97438 * 7 2 1 9 9 C 1.53002 * 109.46825 * 85.00052 * 8 7 2 10 10 H 1.09000 * 109.47369 * 304.99704 * 9 8 7 11 11 C 1.53002 * 109.46917 * 185.00342 * 9 8 7 12 12 N 1.46493 * 109.47214 * 65.00309 * 9 8 7 13 13 C 1.34776 * 120.00147 * 205.00102 * 12 9 8 14 14 O 1.21555 * 119.99839 * 359.97438 * 13 12 9 15 15 C 1.47883 * 120.00440 * 180.02562 * 13 12 9 16 16 C 1.39925 * 120.02329 * 359.71694 * 15 13 12 17 17 C 1.38332 * 120.35818 * 179.72304 * 16 15 13 18 18 C 1.37753 * 120.41000 * 0.55812 * 17 16 15 19 19 C 1.40747 * 120.03858 * 359.72260 * 18 17 16 20 20 C 1.41442 * 120.17411 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99877 * 24.44185 * 20 19 18 22 22 C 1.39944 * 119.99699 * 204.43938 * 20 19 18 23 23 N 1.30819 * 120.00237 * 17.88176 * 22 20 19 24 24 Si 1.86801 * 119.99665 * 197.88139 * 22 20 19 25 25 H 1.48499 * 109.47270 * 59.99925 * 24 22 20 26 26 H 1.48496 * 109.46986 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47022 * 299.99849 * 24 22 20 28 28 C 1.38993 * 120.02879 * 179.97438 * 15 13 12 29 29 H 1.09001 * 109.47214 * 89.99958 * 1 2 3 30 30 H 1.09007 * 109.47384 * 330.00222 * 1 2 3 31 31 H 1.09001 * 109.47687 * 210.00061 * 1 2 3 32 32 H 1.08005 * 119.99897 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.00568 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00143 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.99610 * 180.02562 * 6 5 4 36 36 H 1.08994 * 109.47227 * 204.99880 * 8 7 2 37 37 H 1.09003 * 109.47110 * 325.00019 * 8 7 2 38 38 H 1.09009 * 109.47144 * 299.99937 * 11 9 8 39 39 H 1.08999 * 109.47326 * 59.99588 * 11 9 8 40 40 H 1.08996 * 109.47151 * 180.02562 * 11 9 8 41 41 H 0.96998 * 120.00035 * 24.99845 * 12 9 8 42 42 H 1.08005 * 119.81705 * 359.97438 * 16 15 13 43 43 H 1.07999 * 119.79066 * 180.26297 * 17 16 15 44 44 H 1.07994 * 119.97776 * 179.74130 * 18 17 16 45 45 H 0.96996 * 120.00281 * 180.02562 * 23 22 20 46 46 H 1.07996 * 120.20292 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5805 -1.1971 0.0009 7 6 2.1980 -1.1970 0.0057 8 6 1.4444 -2.5021 0.0125 9 6 1.0800 -2.8880 -1.4225 10 1 0.5302 -2.0711 -1.8900 11 6 0.2089 -4.1457 -1.4068 12 7 2.3040 -3.1512 -2.1832 13 6 2.3070 -3.0133 -3.5239 14 8 1.2939 -2.6711 -4.1019 15 6 3.5424 -3.2796 -4.2919 16 6 4.7102 -3.6689 -3.6267 17 6 5.8681 -3.9252 -4.3387 18 6 5.8883 -3.7892 -5.7094 19 6 4.7249 -3.3929 -6.3953 20 6 4.7423 -3.2528 -7.8027 21 1 5.4653 -3.7985 -8.3907 22 6 3.8226 -2.4071 -8.4331 23 7 3.1919 -1.4941 -7.7402 24 14 3.4955 -2.5821 -10.2639 25 1 2.9811 -3.9462 -10.5467 26 1 2.4884 -1.5755 -10.6852 27 1 4.7576 -2.3634 -11.0153 28 6 3.5459 -3.1381 -5.6746 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 0.8900 0.5138 31 1 -0.3634 -0.8900 0.5138 32 1 1.6583 2.1326 0.0004 33 1 4.1205 2.1325 0.0001 34 1 5.3517 -0.0002 0.0005 35 1 4.1206 -2.1324 0.0013 36 1 2.0695 -3.2802 0.4504 37 1 0.5339 -2.3929 0.6018 38 1 0.7587 -4.9627 -0.9393 39 1 -0.7018 -3.9499 -0.8407 40 1 -0.0503 -4.4209 -2.4291 41 1 3.1123 -3.4246 -1.7220 42 1 4.7063 -3.7737 -2.5517 43 1 6.7631 -4.2292 -3.8163 44 1 6.7973 -3.9870 -6.2579 45 1 2.5542 -0.9082 -8.1771 46 1 2.6479 -2.8342 -6.1920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055557646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:43 Heat of formation + Delta-G solvation = -28.695603 kcal Electronic energy + Delta-G solvation = -26818.219362 eV Core-core repulsion = 23249.596697 eV Total energy + Delta-G solvation = -3568.622665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.18613 -40.28336 -38.86105 -36.99019 -35.61763 -34.04768 -33.05680 -32.16680 -31.31415 -30.87156 -28.20397 -27.21294 -27.01695 -24.77870 -23.00045 -22.87010 -22.34700 -21.26962 -21.17061 -19.50893 -17.93383 -17.43159 -17.27099 -16.81565 -16.41144 -16.25232 -16.02159 -15.78612 -15.33254 -15.09587 -14.80871 -14.59186 -14.45317 -14.25823 -13.98126 -13.86168 -13.53066 -13.31014 -13.27640 -13.03300 -12.96652 -12.81751 -12.78433 -12.63384 -12.51838 -12.22346 -11.97303 -11.88675 -11.75461 -11.60227 -11.50907 -11.07056 -10.72148 -10.10017 -9.65291 -9.47113 -9.41078 -9.37446 -8.67000 -6.38757 0.40811 0.47797 0.52665 1.01695 1.34785 1.46862 1.49756 2.13570 2.19039 2.31615 2.79740 2.86400 3.70405 3.76596 3.90110 3.96238 4.09264 4.12827 4.19605 4.31890 4.41261 4.42961 4.43253 4.56808 4.59052 4.73604 4.77175 4.81349 4.86117 4.89186 4.93801 4.99803 5.07024 5.09696 5.20342 5.21742 5.31158 5.32936 5.37354 5.51975 5.57884 5.63761 5.66099 5.79693 5.87574 5.93484 6.05550 6.18683 6.29253 6.53097 6.73161 6.87556 6.95198 7.38675 8.29535 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003396 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.315095 B = 8243.008279 C = 8326.135108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.094 4.094 8 C -0.079 4.079 9 C 0.145 3.855 10 H 0.058 0.942 11 C -0.158 4.158 12 N -0.703 5.703 13 C 0.561 3.439 14 O -0.591 6.591 15 C -0.138 4.138 16 C -0.196 4.196 17 C -0.095 4.095 18 C -0.219 4.219 19 C 0.068 3.932 20 C -0.500 4.500 21 H 0.084 0.916 22 C 0.030 3.970 23 N -0.827 5.827 24 Si 0.982 3.018 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.251 1.251 28 C -0.133 4.133 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.029 0.971 41 H 0.408 0.592 42 H 0.135 0.865 43 H 0.139 0.861 44 H 0.108 0.892 45 H 0.286 0.714 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 0.328 18.648 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.099 4.099 3 C -0.155 4.155 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.094 4.094 8 C -0.116 4.116 9 C 0.041 3.959 10 H 0.076 0.924 11 C -0.216 4.216 12 N -0.356 5.356 13 C 0.351 3.649 14 O -0.473 6.473 15 C -0.141 4.141 16 C -0.215 4.215 17 C -0.113 4.113 18 C -0.238 4.238 19 C 0.066 3.934 20 C -0.529 4.529 21 H 0.102 0.898 22 C -0.185 4.185 23 N -0.452 5.452 24 Si 0.802 3.198 25 H -0.184 1.184 26 H -0.197 1.197 27 H -0.175 1.175 28 C -0.154 4.154 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.246 0.754 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.278 0.777 18.270 18.578 hybrid contribution 0.217 0.338 -1.166 1.233 sum -3.061 1.115 17.104 17.412 Atomic orbital electron populations 1.20896 0.90179 1.04131 1.02099 1.20099 0.97167 0.92964 0.99712 1.21288 0.94720 0.98138 1.01342 1.21401 0.94644 0.98877 1.00327 1.21409 1.00803 0.92828 1.00546 1.21294 0.93817 0.98857 0.99805 1.19898 0.93997 0.95030 1.00496 1.20958 1.02166 0.94096 0.94374 1.20986 0.85426 0.97879 0.91573 0.92358 1.22152 1.00580 0.97432 1.01414 1.45802 1.14879 1.69626 1.05295 1.18691 0.87678 0.75573 0.82954 1.90659 1.36148 1.49465 1.71028 1.19831 0.94149 1.06117 0.94040 1.20820 0.92427 1.09342 0.98939 1.20914 0.97900 0.98994 0.93474 1.21399 0.96908 1.10594 0.94941 1.17932 0.91028 0.90312 0.94143 1.19858 1.16313 1.24299 0.92473 0.89772 1.26856 0.93401 0.92423 1.05777 1.69894 1.21027 1.13642 1.40663 0.85259 0.79327 0.79199 0.76018 1.18421 1.19704 1.17507 1.21436 0.98344 1.02939 0.92653 0.92405 0.90379 0.89527 0.85081 0.84895 0.84889 0.84650 0.88196 0.86893 0.90556 0.89127 0.95212 0.75386 0.84731 0.84349 0.87423 0.90381 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.41 71.23 0.67 -1.52 16 2 C -0.10 -2.34 5.88 -19.87 -0.12 -2.45 16 3 C -0.14 -3.24 9.70 22.27 0.22 -3.02 16 4 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 5 C -0.14 -3.23 10.05 22.27 0.22 -3.01 16 6 C -0.12 -2.73 9.34 22.27 0.21 -2.53 16 7 C -0.09 -2.14 4.89 -19.86 -0.10 -2.24 16 8 C -0.08 -1.41 4.39 29.85 0.13 -1.28 16 9 C 0.15 3.77 2.56 44.99 0.12 3.88 16 10 H 0.06 1.89 7.37 -2.39 -0.02 1.87 16 11 C -0.16 -3.57 9.48 71.98 0.68 -2.89 16 12 N -0.70 -22.16 4.61 -445.37 -2.05 -24.21 16 13 C 0.56 25.10 7.74 86.80 0.67 25.78 16 14 O -0.59 -31.43 16.00 -3.89 -0.06 -31.49 16 15 C -0.14 -6.66 5.87 -20.13 -0.12 -6.78 16 16 C -0.20 -7.73 9.55 22.70 0.22 -7.52 16 17 C -0.09 -3.78 10.01 22.18 0.22 -3.56 16 18 C -0.22 -10.35 9.78 22.77 0.22 -10.13 16 19 C 0.07 3.77 5.57 -21.32 -0.12 3.65 16 20 C -0.50 -27.76 9.05 23.47 0.21 -27.55 16 21 H 0.08 4.39 7.91 -2.91 -0.02 4.36 16 22 C 0.03 1.62 5.14 85.26 0.44 2.05 16 23 N -0.83 -47.34 10.96 21.83 0.24 -47.10 16 24 Si 0.98 40.38 29.60 68.60 2.03 42.41 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 28 C -0.13 -7.57 8.24 23.01 0.19 -7.38 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 31 H 0.09 1.27 6.02 -2.39 -0.01 1.25 16 32 H 0.13 2.59 8.06 -2.91 -0.02 2.56 16 33 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.14 2.49 7.98 -2.91 -0.02 2.46 16 36 H 0.10 1.36 8.05 -2.39 -0.02 1.34 16 37 H 0.11 1.51 6.16 -2.39 -0.01 1.49 16 38 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.41 10.51 6.34 -92.71 -0.59 9.93 16 42 H 0.14 4.00 6.38 -2.91 -0.02 3.98 16 43 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 45 H 0.29 15.15 8.30 -92.71 -0.77 14.38 16 46 H 0.10 6.12 5.74 -2.91 -0.02 6.11 16 Total: -1.00 -73.37 380.35 4.75 -68.62 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: 0.40 Total: 41.17 kcal Atomic # 6 Polarization: -53.60 SS G_CDS: 4.19 Total: -49.41 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.82 Total: -71.31 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.06 Total: -31.49 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -73.37 4.75 -68.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055557646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.929 kcal (2) G-P(sol) polarization free energy of solvation -73.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds