Wall clock time and date at job start Tue Mar 31 2020 13:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38387 * 119.84955 * 2 1 4 4 C 1.37939 * 120.14483 * 180.02562 * 3 2 1 5 5 C 1.39597 * 119.84785 * 0.27720 * 4 3 2 6 6 C 1.47851 * 120.14107 * 179.72094 * 5 4 3 7 7 O 1.21548 * 120.00069 * 186.23017 * 6 5 4 8 8 N 1.34778 * 119.99986 * 6.22733 * 6 5 4 9 9 C 1.46502 * 120.00405 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47006 * 325.00380 * 9 8 6 11 11 C 1.52992 * 109.47237 * 205.00148 * 9 8 6 12 12 C 1.50701 * 109.47281 * 65.00430 * 11 9 8 13 13 H 1.08002 * 119.99855 * 359.97438 * 12 11 9 14 14 C 1.37880 * 120.00295 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99869 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00050 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46946 * 60.00084 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47194 * 300.00190 * 16 14 12 20 20 C 1.50704 * 109.46630 * 85.00343 * 9 8 6 21 21 C 1.38227 * 120.00185 * 39.73072 * 20 9 8 22 22 C 1.38240 * 120.00031 * 179.81359 * 21 20 9 23 23 C 1.38236 * 119.99643 * 0.38944 * 22 21 20 24 24 C 1.38240 * 120.00158 * 359.86526 * 23 22 21 25 25 C 1.38233 * 120.00015 * 359.95191 * 24 23 22 26 26 C 1.39559 * 119.71493 * 359.46803 * 5 4 3 27 27 C 1.50701 * 120.06957 * 180.23214 * 26 5 4 28 28 C 1.37973 * 119.85065 * 0.50920 * 26 5 4 29 29 H 1.08994 * 109.47179 * 90.00285 * 1 2 3 30 30 H 1.09001 * 109.46970 * 210.00029 * 1 2 3 31 31 H 1.08996 * 109.47273 * 329.99575 * 1 2 3 32 32 H 1.07995 * 119.92853 * 0.04469 * 3 2 1 33 33 H 1.07994 * 120.07519 * 179.97438 * 4 3 2 34 34 H 0.97004 * 120.00035 * 0.02562 * 8 6 5 35 35 H 1.09007 * 109.46699 * 185.00027 * 11 9 8 36 36 H 1.08997 * 109.47682 * 304.99969 * 11 9 8 37 37 H 0.96997 * 120.00137 * 180.02562 * 15 14 12 38 38 H 1.07997 * 120.00306 * 359.97438 * 21 20 9 39 39 H 1.07994 * 120.00064 * 180.23128 * 22 21 20 40 40 H 1.08003 * 119.99833 * 179.83531 * 23 22 21 41 41 H 1.07994 * 119.99451 * 179.97438 * 24 23 22 42 42 H 1.07990 * 120.00150 * 180.02562 * 25 24 23 43 43 H 1.09002 * 109.47037 * 276.85015 * 27 26 5 44 44 H 1.08992 * 109.47589 * 36.85817 * 27 26 5 45 45 H 1.09003 * 109.46369 * 156.85920 * 27 26 5 46 46 H 1.08003 * 119.92775 * 179.73796 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5751 1.2074 -0.0005 5 6 4.2761 0.0002 -0.0069 6 6 5.7546 0.0003 -0.0138 7 8 6.3619 -1.0458 -0.1335 8 7 6.4290 1.1603 0.1128 9 6 7.8940 1.1604 0.1066 10 1 8.2595 0.2584 0.5975 11 6 8.4071 2.3921 0.8552 12 6 8.0147 2.2971 2.3071 13 1 7.4549 1.4437 2.6604 14 6 8.3703 3.2996 3.1844 15 7 9.0524 4.3385 2.7542 16 14 7.8833 3.1821 4.9839 17 1 8.4771 1.9577 5.5785 18 1 8.3814 4.3776 5.7106 19 1 6.4036 3.1179 5.0931 20 6 8.3903 1.1944 -1.3160 21 6 7.7486 1.9821 -2.2533 22 6 8.2061 2.0162 -3.5573 23 6 9.3005 1.2563 -3.9258 24 6 9.9390 0.4644 -2.9897 25 6 9.4837 0.4333 -1.6849 26 6 3.5754 -1.2067 -0.0015 27 6 4.3241 -2.5146 -0.0031 28 6 2.1957 -1.1997 -0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6522 2.1334 0.0007 33 1 4.1115 2.1447 -0.0010 34 1 5.9444 1.9951 0.2087 35 1 9.4932 2.4398 0.7747 36 1 7.9707 3.2905 0.4189 37 1 9.3029 5.0436 3.3715 38 1 6.8914 2.5730 -1.9662 39 1 7.7071 2.6346 -4.2887 40 1 9.6563 1.2809 -4.9453 41 1 10.7936 -0.1295 -3.2779 42 1 9.9828 -0.1850 -0.9535 43 1 4.6059 -2.7706 -1.0244 44 1 5.2212 -2.4204 0.6087 45 1 3.6864 -3.2986 0.4053 46 1 1.6521 -2.1330 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153286665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:06 Heat of formation + Delta-G solvation = -17.523816 kcal Electronic energy + Delta-G solvation = -26786.003813 eV Core-core repulsion = 23217.865593 eV Total energy + Delta-G solvation = -3568.138220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51134 -40.28982 -39.21646 -36.88379 -34.83672 -34.25240 -33.50805 -32.06289 -31.67591 -30.55944 -28.37081 -28.04159 -26.57502 -23.83963 -23.72403 -23.36987 -22.63051 -21.26468 -21.07971 -18.90249 -18.47783 -17.71387 -17.20845 -16.55763 -16.43821 -16.10342 -15.93927 -15.79840 -15.71215 -15.15020 -14.72782 -14.51974 -14.35720 -14.20628 -14.08832 -14.07515 -13.80273 -13.70686 -13.53498 -13.21505 -12.94441 -12.77307 -12.64108 -12.59450 -12.52018 -12.41128 -12.16769 -11.92879 -11.88205 -11.60350 -11.36561 -10.68284 -10.54042 -10.04015 -9.77790 -9.76972 -9.55976 -9.49280 -8.21997 -6.32316 -0.10078 0.40803 0.49824 0.54448 1.38143 1.39490 1.47721 1.92555 2.30528 2.38220 2.85919 2.96433 3.11989 3.74819 3.81480 3.91080 3.96439 4.02010 4.03651 4.19411 4.30603 4.37357 4.39206 4.45093 4.62948 4.65896 4.74261 4.75246 4.76621 4.80955 4.84363 4.89393 5.03985 5.10891 5.17936 5.18961 5.25214 5.33357 5.35073 5.40239 5.58255 5.59622 5.59909 5.62508 5.63999 5.75730 5.89699 5.99922 6.14197 6.18726 6.67009 6.79468 7.30784 7.36592 8.88505 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.007517 B = 0.005076 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3724.227406 B = 5515.286127 C = 8032.997972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C -0.138 4.138 4 C -0.083 4.083 5 C -0.166 4.166 6 C 0.549 3.451 7 O -0.572 6.572 8 N -0.693 5.693 9 C 0.201 3.799 10 H 0.059 0.941 11 C 0.039 3.961 12 C -0.531 4.531 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.267 1.267 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.038 4.038 27 C -0.113 4.113 28 C -0.137 4.137 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.132 0.868 34 H 0.404 0.596 35 H 0.005 0.995 36 H 0.012 0.988 37 H 0.265 0.735 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.550 -6.854 -11.017 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.057 4.057 3 C -0.156 4.156 4 C -0.102 4.102 5 C -0.169 4.169 6 C 0.339 3.661 7 O -0.454 6.454 8 N -0.342 5.342 9 C 0.096 3.904 10 H 0.077 0.923 11 C 0.001 3.999 12 C -0.569 4.569 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.564 5.564 16 Si 0.779 3.221 17 H -0.201 1.201 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.098 4.098 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.039 4.039 27 C -0.169 4.169 28 C -0.154 4.154 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.150 0.850 34 H 0.241 0.759 35 H 0.023 0.977 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.021 -7.399 -11.024 19.310 hybrid contribution 0.339 0.628 1.351 1.528 sum -13.683 -6.770 -9.673 18.073 Atomic orbital electron populations 1.20914 0.88282 1.04196 1.03672 1.20525 0.98073 0.92416 0.94687 1.21282 0.93019 0.99302 1.01970 1.21498 0.95618 0.96620 0.96458 1.19840 0.91583 0.95484 1.09961 1.18728 0.88136 0.83414 0.75859 1.90646 1.70988 1.31816 1.51965 1.45813 1.06739 1.09317 1.72335 1.19747 0.79533 0.99863 0.91272 0.92307 1.19121 0.95384 0.91359 0.93987 1.21339 1.35444 1.05700 0.94434 0.93149 1.25743 0.94910 0.94938 1.02911 1.70056 1.39322 1.10199 1.36794 0.85674 0.78980 0.77486 0.79952 1.20097 1.20570 1.19233 1.20425 0.96541 0.97100 0.95721 1.21050 1.00221 0.98921 0.93892 1.21433 0.97389 0.99733 0.95673 1.21474 0.95971 0.96655 1.00550 1.21393 1.00556 0.99672 0.92435 1.21174 0.96946 0.99440 0.97561 1.20208 0.94566 0.94390 0.94743 1.20944 1.00161 0.93118 1.02695 1.21175 0.92058 0.99397 1.02794 0.89510 0.90184 0.90158 0.82969 0.85016 0.75931 0.97653 0.97007 0.92643 0.86461 0.83619 0.83007 0.83736 0.86882 0.91510 0.91608 0.90146 0.83121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.00 71.23 0.71 -0.60 16 2 C -0.06 -1.09 5.89 -19.81 -0.12 -1.21 16 3 C -0.14 -2.93 9.68 22.23 0.22 -2.72 16 4 C -0.08 -2.25 9.53 22.53 0.21 -2.04 16 5 C -0.17 -5.40 5.87 -20.09 -0.12 -5.52 16 6 C 0.55 21.67 7.66 86.79 0.66 22.33 16 7 O -0.57 -25.48 13.02 -3.87 -0.05 -25.53 16 8 N -0.69 -27.46 3.97 -448.98 -1.78 -29.24 16 9 C 0.20 8.90 2.12 44.24 0.09 8.99 16 10 H 0.06 2.89 7.44 -2.39 -0.02 2.88 16 11 C 0.04 2.00 4.49 29.85 0.13 2.13 16 12 C -0.53 -29.45 8.84 25.60 0.23 -29.22 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 14 C 0.01 0.78 5.46 84.66 0.46 1.24 16 15 N -0.92 -54.30 13.29 21.45 0.28 -54.02 16 16 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C -0.10 -3.83 4.91 -19.87 -0.10 -3.93 16 21 C -0.12 -4.27 9.33 22.27 0.21 -4.06 16 22 C -0.12 -3.55 10.05 22.27 0.22 -3.32 16 23 C -0.13 -3.39 10.05 22.27 0.22 -3.17 16 24 C -0.12 -3.61 10.05 22.27 0.22 -3.39 16 25 C -0.13 -4.87 9.67 22.27 0.22 -4.65 16 26 C -0.04 -1.10 5.91 -19.61 -0.12 -1.22 16 27 C -0.11 -3.26 8.72 71.24 0.62 -2.64 16 28 C -0.14 -2.99 9.31 22.23 0.21 -2.79 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 31 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.13 3.34 6.45 -2.91 -0.02 3.32 16 34 H 0.40 14.80 6.68 -92.71 -0.62 14.18 16 35 H 0.01 0.29 8.14 -2.38 -0.02 0.28 16 36 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.12 3.89 7.71 -2.91 -0.02 3.87 16 39 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 42 H 0.11 4.13 8.04 -2.92 -0.02 4.11 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 2.33 5.88 -2.39 -0.01 2.32 16 45 H 0.08 1.78 8.04 -2.39 -0.02 1.76 16 46 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -70.21 383.97 5.04 -65.17 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.36 Total: 33.38 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 4.20 Total: -35.79 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -1.50 Total: -83.26 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.05 Total: -25.53 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -70.21 5.04 -65.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153286665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.650 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds