Wall clock time and date at job start Tue Mar 31 2020 13:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38240 * 120.00313 * 2 1 4 4 C 1.38229 * 120.00301 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.00100 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99951 * 359.97438 * 4 3 2 7 7 C 1.38231 * 119.99894 * 0.02562 * 6 4 3 8 8 C 1.50706 * 119.99841 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.47489 * 90.00080 * 8 7 6 10 10 N 1.46493 * 109.46982 * 180.02562 * 9 8 7 11 11 C 1.34780 * 119.99656 * 179.97438 * 10 9 8 12 12 O 1.21547 * 120.00017 * 0.02562 * 11 10 9 13 13 C 1.47887 * 120.00066 * 179.97438 * 11 10 9 14 14 C 1.39922 * 120.02252 * 359.72559 * 13 11 10 15 15 C 1.38328 * 120.35731 * 179.74178 * 14 13 11 16 16 C 1.37757 * 120.41165 * 0.55513 * 15 14 13 17 17 C 1.40750 * 120.03680 * 359.70234 * 16 15 14 18 18 C 1.41439 * 120.17398 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99949 * 24.43748 * 18 17 16 20 20 C 1.39933 * 119.99732 * 204.43609 * 18 17 16 21 21 N 1.30827 * 120.00229 * 17.88278 * 20 18 17 22 22 Si 1.86798 * 119.99930 * 197.88010 * 20 18 17 23 23 H 1.48502 * 109.47032 * 90.00296 * 22 20 18 24 24 H 1.48501 * 109.47414 * 210.00185 * 22 20 18 25 25 H 1.48496 * 109.47265 * 330.00193 * 22 20 18 26 26 C 1.38987 * 120.02919 * 179.97438 * 13 11 10 27 27 C 1.38237 * 120.00481 * 0.24993 * 7 6 4 28 28 H 1.09002 * 109.47414 * 89.99675 * 1 2 3 29 29 H 1.09001 * 109.47319 * 210.00285 * 1 2 3 30 30 H 1.09001 * 109.46936 * 329.99981 * 1 2 3 31 31 H 1.08006 * 119.99611 * 359.97438 * 3 2 1 32 32 H 1.08999 * 109.47475 * 270.02175 * 5 4 3 33 33 H 1.09004 * 109.47336 * 30.01998 * 5 4 3 34 34 H 1.09005 * 109.47462 * 150.01690 * 5 4 3 35 35 H 1.08005 * 120.00027 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.46855 * 209.99923 * 8 7 6 37 37 H 1.08998 * 109.47174 * 329.99423 * 8 7 6 38 38 H 1.09000 * 109.46292 * 300.00090 * 9 8 7 39 39 H 1.08998 * 109.47450 * 59.99512 * 9 8 7 40 40 H 0.96999 * 120.00346 * 359.97438 * 10 9 8 41 41 H 1.07995 * 119.82353 * 359.97438 * 14 13 11 42 42 H 1.08005 * 119.79571 * 180.27763 * 15 14 13 43 43 H 1.08003 * 119.98015 * 179.71622 * 16 15 14 44 44 H 0.96995 * 119.99922 * 179.97438 * 21 20 18 45 45 H 1.08008 * 120.20154 * 359.95677 * 26 13 11 46 46 H 1.07993 * 120.00597 * 179.71975 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5022 -0.0011 6 6 4.2717 0.0000 -0.0005 7 6 3.5805 -1.1971 -0.0005 8 6 4.3340 -2.5023 -0.0011 9 6 4.5896 -2.9443 1.4411 10 7 5.3226 -4.2127 1.4404 11 6 5.6606 -4.7963 2.6074 12 8 5.3568 -4.2705 3.6603 13 6 6.4001 -6.0770 2.6068 14 6 6.7441 -6.6862 1.3950 15 6 7.4404 -7.8814 1.3864 16 6 7.7932 -8.4916 2.5700 17 6 7.4510 -7.8964 3.7987 18 6 7.8123 -8.5200 5.0157 19 1 8.6512 -9.1995 5.0461 20 6 7.0827 -8.2566 6.1804 21 7 5.8866 -7.7328 6.0986 22 14 7.8166 -8.6527 7.8519 23 1 8.5687 -7.4748 8.3540 24 1 6.7273 -8.9871 8.8042 25 1 8.7372 -9.8111 7.7264 26 6 6.7493 -6.6791 3.8098 27 6 2.1982 -1.1972 -0.0058 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.5150 2.8169 -1.0289 33 1 3.7453 3.2619 0.5131 34 1 5.2868 2.3719 0.5121 35 1 5.3518 0.0000 -0.0014 36 1 3.7447 -3.2618 -0.5149 37 1 5.2862 -2.3718 -0.5154 38 1 5.1789 -2.1847 1.9548 39 1 3.6375 -3.0747 1.9554 40 1 5.5648 -4.6325 0.6002 41 1 6.4678 -6.2189 0.4615 42 1 7.7052 -8.3415 0.4458 43 1 8.3328 -9.4270 2.5551 44 1 5.3808 -7.5506 6.9059 45 1 6.4829 -6.2141 4.7476 46 1 1.6582 -2.1324 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172578254.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:51 Heat of formation + Delta-G solvation = -20.810765 kcal Electronic energy + Delta-G solvation = -25195.874225 eV Core-core repulsion = 21627.593472 eV Total energy + Delta-G solvation = -3568.280753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.90666 -39.10506 -37.05300 -35.38348 -33.76708 -33.72315 -33.00155 -30.39911 -29.44343 -28.78053 -27.36661 -26.89003 -25.33703 -23.98223 -21.93975 -20.94394 -20.93466 -20.64849 -19.39573 -17.70301 -16.48272 -16.21124 -16.10349 -15.60987 -15.06087 -14.83785 -14.64359 -14.43751 -14.25769 -13.71559 -13.46430 -13.38539 -13.27270 -13.07693 -12.99766 -12.77876 -12.68608 -12.50204 -12.28889 -12.22692 -11.66176 -11.44561 -11.40819 -11.17751 -11.13994 -11.10049 -11.01671 -10.71880 -10.49071 -10.01273 -9.68719 -9.21520 -9.03620 -8.74600 -8.73529 -8.63292 -7.62495 -7.51827 -6.79695 -4.41093 1.17045 1.19579 2.22174 2.81935 3.08168 3.11379 3.16219 3.46808 3.74151 3.88499 3.92703 4.54501 4.55344 4.64125 4.65403 4.96009 5.02569 5.02864 5.11416 5.11920 5.31452 5.37395 5.37940 5.39338 5.51743 5.59100 5.61499 5.62853 5.71154 5.86907 5.96292 6.03823 6.05214 6.15000 6.27769 6.36804 6.39106 6.49044 6.72357 6.84326 6.88584 6.99386 7.02492 7.21811 7.38629 7.70680 7.76495 7.93262 8.10548 8.19950 8.51181 8.80665 8.83976 8.97131 10.15041 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018293 B = 0.002197 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.312989 B =12743.231394 C =13272.436350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.126 4.126 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.120 4.120 7 C -0.068 4.068 8 C -0.092 4.092 9 C 0.129 3.871 10 N -0.739 5.739 11 C 0.563 3.437 12 O -0.546 6.546 13 C -0.128 4.128 14 C -0.219 4.219 15 C -0.098 4.098 16 C -0.212 4.212 17 C 0.098 3.902 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.911 3.089 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.093 4.093 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.285 0.715 45 H 0.134 0.866 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.811 15.243 -12.722 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.171 4.171 6 C -0.138 4.138 7 C -0.069 4.069 8 C -0.130 4.130 9 C 0.005 3.995 10 N -0.393 5.393 11 C 0.354 3.646 12 O -0.424 6.424 13 C -0.131 4.131 14 C -0.239 4.239 15 C -0.116 4.116 16 C -0.232 4.232 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.735 3.265 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.113 4.113 27 C -0.138 4.138 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.152 0.848 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.256 15.701 -11.795 20.935 hybrid contribution 0.279 -0.399 0.277 0.561 sum -6.977 15.301 -11.518 20.383 Atomic orbital electron populations 1.20793 0.91219 1.02873 1.02231 1.19886 0.96017 0.93068 0.99261 1.20878 0.93510 0.97453 1.02551 1.19878 0.93811 0.95267 0.99306 1.20790 1.00023 0.94058 1.02223 1.20937 0.99773 0.91408 1.01655 1.19670 0.93621 0.94482 0.99128 1.20806 1.00596 0.94438 0.97146 1.21163 0.96993 0.86100 0.95289 1.45955 1.59879 1.24106 1.09329 1.18853 0.78139 0.84938 0.82709 1.90699 1.55007 1.65292 1.31376 1.19473 1.03735 0.94554 0.95318 1.20336 1.09341 0.99540 0.94646 1.20436 0.99081 0.95467 0.96633 1.21099 1.09191 1.00517 0.92415 1.17610 0.89914 0.90389 0.92532 1.19596 1.13184 1.23895 0.92178 0.90047 1.25973 0.93848 0.93140 1.01685 1.69791 1.08353 1.30856 1.31702 0.86267 0.79653 0.79863 0.80717 1.19136 1.20222 1.18573 1.21647 0.98943 0.94432 0.96277 1.20946 0.93509 0.97703 1.01594 0.91241 0.91397 0.91615 0.86337 0.91247 0.91619 0.91421 0.86017 0.90219 0.90236 0.91778 0.91738 0.76587 0.89236 0.88904 0.88619 0.90426 0.84834 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 2 C -0.08 -0.81 5.88 -104.62 -0.62 -1.42 16 3 C -0.13 -1.20 9.36 -39.58 -0.37 -1.57 16 4 C -0.08 -0.80 5.88 -104.63 -0.62 -1.42 16 5 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 6 C -0.12 -1.25 9.36 -39.58 -0.37 -1.63 16 7 C -0.07 -0.75 5.13 -104.62 -0.54 -1.28 16 8 C -0.09 -0.97 5.46 -27.88 -0.15 -1.13 16 9 C 0.13 1.84 5.66 -4.05 -0.02 1.82 16 10 N -0.74 -12.30 5.51 -61.24 -0.34 -12.64 16 11 C 0.56 12.53 7.77 -12.31 -0.10 12.43 16 12 O -0.55 -14.03 16.33 5.32 0.09 -13.95 16 13 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 14 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 15 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 16 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 17 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 18 C -0.46 -12.13 9.05 -37.73 -0.34 -12.48 16 19 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 20 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 21 N -0.78 -20.92 10.96 55.55 0.61 -20.31 16 22 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 C -0.09 -2.50 8.24 -38.45 -0.32 -2.82 16 27 C -0.12 -1.26 9.36 -39.58 -0.37 -1.63 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.40 5.62 6.49 -40.82 -0.26 5.36 16 41 H 0.09 1.54 6.38 -52.49 -0.33 1.20 16 42 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 44 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 45 H 0.13 3.90 5.74 -52.48 -0.30 3.60 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -30.83 386.98 -11.15 -41.98 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -6.77 Total: 10.04 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -5.54 Total: -24.84 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.27 Total: -32.95 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.83 -11.15 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172578254.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.169 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds