Wall clock time and date at job start Tue Mar 31 2020 14:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47357 * 2 1 4 4 C 1.53003 * 109.47088 * 239.99935 * 2 1 3 5 5 C 1.50697 * 109.47075 * 120.00113 * 2 1 3 6 6 C 1.38128 * 120.03823 * 7.10916 * 5 2 1 7 7 C 1.38266 * 120.07705 * 179.97438 * 6 5 2 8 8 C 1.38315 * 120.14634 * 359.97438 * 7 6 5 9 9 C 1.38080 * 120.07312 * 0.02562 * 8 7 6 10 10 C 1.38887 * 120.03793 * 187.08985 * 5 2 1 11 11 N 1.39800 * 120.07286 * 359.97438 * 10 5 2 12 12 C 1.34783 * 119.99867 * 154.30453 * 11 10 5 13 13 O 1.21597 * 119.99795 * 2.55957 * 12 11 10 14 14 C 1.47596 * 119.99653 * 182.55847 * 12 11 10 15 15 C 1.40030 * 119.89869 * 359.72962 * 14 12 11 16 16 C 1.36306 * 120.10135 * 179.71687 * 15 14 12 17 17 C 1.40895 * 119.89638 * 0.55206 * 16 15 14 18 18 C 1.41089 * 120.10479 * 179.69593 * 17 16 15 19 19 H 1.08000 * 120.00057 * 205.58203 * 18 17 16 20 20 C 1.40232 * 119.99761 * 25.58726 * 18 17 16 21 21 N 1.30634 * 120.00312 * 18.74799 * 20 18 17 22 22 Si 1.86800 * 119.99647 * 198.75225 * 20 18 17 23 23 H 1.48496 * 109.47404 * 59.99684 * 22 20 18 24 24 H 1.48503 * 109.47248 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47267 * 299.99512 * 22 20 18 26 26 C 1.40901 * 119.79275 * 359.72149 * 17 16 15 27 27 C 1.36296 * 119.89575 * 0.02562 * 26 17 16 28 28 H 1.08996 * 109.47631 * 299.99833 * 1 2 3 29 29 H 1.09001 * 109.47119 * 59.99986 * 1 2 3 30 30 H 1.09007 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47081 * 185.42817 * 3 2 1 32 32 H 1.08999 * 109.46892 * 305.43031 * 3 2 1 33 33 H 1.08997 * 109.46753 * 65.42772 * 3 2 1 34 34 H 1.09000 * 109.47116 * 308.53469 * 4 2 1 35 35 H 1.08997 * 109.47101 * 68.53630 * 4 2 1 36 36 H 1.09000 * 109.46842 * 188.53844 * 4 2 1 37 37 H 1.08000 * 119.95994 * 359.97438 * 6 5 2 38 38 H 1.07994 * 119.92876 * 179.97438 * 7 6 5 39 39 H 1.08001 * 119.96655 * 180.28058 * 8 7 6 40 40 H 1.08008 * 120.04001 * 180.02562 * 9 8 7 41 41 H 0.97005 * 120.00586 * 334.30907 * 11 10 5 42 42 H 1.08001 * 119.95222 * 359.97438 * 15 14 12 43 43 H 1.07999 * 120.05216 * 180.24922 * 16 15 14 44 44 H 0.97002 * 120.00130 * 180.02562 * 21 20 18 45 45 H 1.08010 * 120.04966 * 179.97438 * 26 17 16 46 46 H 1.08003 * 119.94955 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.1441 -1.3623 2.0635 7 6 1.6041 -2.0148 3.1924 8 6 2.9546 -2.0177 3.4911 9 6 3.8479 -1.3680 2.6626 10 6 3.3889 -0.7108 1.5279 11 7 4.2908 -0.0528 0.6864 12 6 5.4610 0.4020 1.1766 13 8 5.7528 0.1993 2.3395 14 6 6.3881 1.1462 0.3019 15 6 6.0524 1.3734 -1.0384 16 6 6.9029 2.0651 -1.8484 17 6 8.1267 2.5416 -1.3383 18 6 9.0133 3.2525 -2.1745 19 1 10.0710 3.2614 -1.9567 20 6 8.5209 3.9477 -3.2884 21 7 7.2525 4.2518 -3.3603 22 14 9.6789 4.4388 -4.6694 23 1 10.2994 3.2218 -5.2516 24 1 8.9172 5.1585 -5.7217 25 1 10.7407 5.3274 -4.1327 26 6 8.4628 2.3055 0.0096 27 6 7.6037 1.6173 0.8134 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1257 1.4440 -0.0972 32 1 1.5995 1.9836 -0.8374 33 1 1.7582 1.9274 0.9346 34 1 1.5575 -1.6954 -1.3288 35 1 1.8066 -0.1270 -2.1326 36 1 3.1192 -0.8553 -1.1762 37 1 0.0890 -1.3623 1.8328 38 1 0.9075 -2.5234 3.8422 39 1 3.3113 -2.5321 4.3712 40 1 4.9025 -1.3709 2.8962 41 1 4.0744 0.0765 -0.2504 42 1 5.1162 1.0037 -1.4300 43 1 6.6413 2.2434 -2.8810 44 1 6.9118 4.7323 -4.1310 45 1 9.4001 2.6685 0.4049 46 1 7.8606 1.4354 1.8465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270391294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:09 Heat of formation + Delta-G solvation = 5.081570 kcal Electronic energy + Delta-G solvation = -27004.298427 eV Core-core repulsion = 23437.140450 eV Total energy + Delta-G solvation = -3567.157977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.72301 -38.65251 -37.20761 -36.27233 -34.26573 -33.97124 -30.69849 -29.96139 -29.56165 -28.90477 -27.49657 -27.23574 -25.96153 -22.92738 -22.77145 -21.50573 -20.97177 -19.89357 -19.25087 -17.63314 -17.37385 -16.60573 -15.83894 -15.50791 -14.93125 -14.55574 -14.42213 -14.27799 -14.10895 -13.86228 -13.68801 -13.42868 -13.24156 -12.82974 -12.71424 -12.30488 -12.17739 -12.06128 -11.97537 -11.86795 -11.72539 -11.46848 -11.35674 -11.27636 -11.07685 -10.96029 -10.77214 -10.73762 -10.58094 -10.13193 -9.91816 -9.64278 -9.43700 -8.93455 -8.53270 -7.86022 -7.76087 -7.55022 -7.13384 -4.69225 1.48701 1.63159 2.16766 2.86834 2.89643 2.93445 2.94755 3.59912 3.65722 3.69678 4.05856 4.47409 4.61157 4.74944 4.95418 5.15689 5.21535 5.25987 5.46395 5.47914 5.53716 5.58688 5.70247 5.73685 5.79813 5.82497 5.86295 5.91158 5.95396 5.98873 6.11778 6.21878 6.25636 6.29739 6.39174 6.59335 6.67314 6.68717 6.74463 6.78126 6.83780 6.95024 7.02946 7.33343 7.37433 7.54556 7.66944 7.76126 7.96860 8.03696 8.29581 8.53058 8.65008 8.86364 9.79049 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.003208 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.622725 B = 8726.218627 C = 9937.396111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 C -0.154 4.154 4 C -0.146 4.146 5 C -0.114 4.114 6 C -0.103 4.103 7 C -0.152 4.152 8 C -0.106 4.106 9 C -0.138 4.138 10 C 0.171 3.829 11 N -0.678 5.678 12 C 0.567 3.433 13 O -0.553 6.553 14 C -0.289 4.289 15 C -0.063 4.063 16 C -0.175 4.175 17 C 0.131 3.869 18 C -0.439 4.439 19 H 0.086 0.914 20 C 0.075 3.925 21 N -0.767 5.767 22 Si 0.914 3.086 23 H -0.260 1.260 24 H -0.275 1.275 25 H -0.262 1.262 26 C -0.238 4.238 27 C -0.017 4.017 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.153 0.847 41 H 0.410 0.590 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.289 0.711 45 H 0.100 0.900 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.218 -6.959 1.555 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.212 4.212 4 C -0.204 4.204 5 C -0.117 4.117 6 C -0.121 4.121 7 C -0.171 4.171 8 C -0.125 4.125 9 C -0.158 4.158 10 C 0.075 3.925 11 N -0.326 5.326 12 C 0.364 3.636 13 O -0.435 6.435 14 C -0.294 4.294 15 C -0.082 4.082 16 C -0.194 4.194 17 C 0.128 3.872 18 C -0.467 4.467 19 H 0.105 0.895 20 C -0.147 4.147 21 N -0.389 5.389 22 Si 0.737 3.263 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.257 4.257 27 C -0.036 4.036 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.171 0.829 41 H 0.252 0.748 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.122 -6.895 2.148 13.261 hybrid contribution 0.223 0.422 -1.059 1.161 sum -10.899 -6.473 1.089 12.723 Atomic orbital electron populations 1.21915 0.94012 1.01698 1.01944 1.19436 0.95884 0.95081 0.92309 1.22141 1.02553 0.94380 1.02098 1.22018 1.00846 1.00676 0.96838 1.19561 0.91325 1.02361 0.98456 1.20859 0.99046 0.97739 0.94482 1.21001 0.95700 1.02258 0.98143 1.21045 0.93198 0.99020 0.99250 1.21727 1.02383 0.96948 0.94771 1.17741 0.88356 0.93724 0.92700 1.44181 1.18411 1.56923 1.13068 1.18787 0.80043 0.77480 0.87246 1.90561 1.75470 1.59154 1.18291 1.18765 0.98969 1.16992 0.94675 1.20434 0.97257 0.97679 0.92834 1.20910 0.96620 1.02163 0.99742 1.17786 0.91512 0.87313 0.90623 1.19859 0.95940 1.24520 1.06343 0.89550 1.26117 0.95721 0.93919 0.98984 1.69727 1.14953 1.25818 1.28431 0.86250 0.80699 0.79757 0.79556 1.18383 1.19977 1.18583 1.20724 1.01336 1.09452 0.94226 1.20351 0.91970 0.93358 0.97921 0.92306 0.92376 0.92343 0.91264 0.92163 0.92408 0.92065 0.91700 0.92772 0.85823 0.86681 0.86345 0.82922 0.74756 0.89642 0.86338 0.90002 0.88216 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.15 37.16 0.27 -1.08 16 2 C -0.03 -0.33 0.75 -155.66 -0.12 -0.44 16 3 C -0.15 -2.06 8.02 37.16 0.30 -1.76 16 4 C -0.15 -1.65 8.24 37.16 0.31 -1.35 16 5 C -0.11 -1.60 4.76 -104.42 -0.50 -2.10 16 6 C -0.10 -1.28 9.00 -39.61 -0.36 -1.64 16 7 C -0.15 -1.89 10.04 -39.54 -0.40 -2.28 16 8 C -0.11 -1.49 10.04 -39.61 -0.40 -1.89 16 9 C -0.14 -2.34 8.77 -39.38 -0.35 -2.69 16 10 C 0.17 2.85 6.02 -83.73 -0.50 2.35 16 11 N -0.68 -11.95 3.52 -10.79 -0.04 -11.99 16 12 C 0.57 11.93 7.64 -12.44 -0.10 11.83 16 13 O -0.55 -12.64 13.28 5.28 0.07 -12.57 16 14 C -0.29 -6.45 5.89 -104.73 -0.62 -7.07 16 15 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 16 C -0.18 -4.15 8.63 -39.27 -0.34 -4.49 16 17 C 0.13 3.23 5.56 -106.80 -0.59 2.64 16 18 C -0.44 -10.59 9.03 -37.75 -0.34 -10.93 16 19 H 0.09 1.98 7.92 -52.49 -0.42 1.56 16 20 C 0.07 1.69 5.11 -17.31 -0.09 1.60 16 21 N -0.77 -17.79 11.07 55.56 0.62 -17.17 16 22 Si 0.91 16.73 29.60 -169.99 -5.03 11.70 16 23 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 24 H -0.28 -4.90 7.11 56.52 0.40 -4.50 16 25 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 26 C -0.24 -5.59 9.73 -39.27 -0.38 -5.97 16 27 C -0.02 -0.38 9.52 -39.61 -0.38 -0.76 16 28 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.51 7.19 -51.92 -0.37 0.13 16 31 H 0.07 1.06 4.98 -51.93 -0.26 0.80 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 35 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.05 0.67 5.48 -51.93 -0.28 0.39 16 37 H 0.12 1.24 5.92 -52.49 -0.31 0.93 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.15 2.89 5.58 -52.48 -0.29 2.60 16 41 H 0.41 6.56 2.12 -40.82 -0.09 6.48 16 42 H 0.09 1.58 6.37 -52.49 -0.33 1.25 16 43 H 0.12 2.83 6.26 -52.49 -0.33 2.50 16 44 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 45 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 46 H 0.10 2.26 7.63 -52.48 -0.40 1.86 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -26.66 362.60 -9.88 -36.54 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -6.01 Total: 15.78 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -4.95 Total: -27.76 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 0.58 Total: -29.16 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -26.66 -9.88 -36.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270391294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.625 kcal (2) G-P(sol) polarization free energy of solvation -26.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds