Wall clock time and date at job start Tue Mar 31 2020 14:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47370 * 2 1 4 4 C 1.52998 * 109.47616 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47172 * 301.71558 * 4 3 2 6 6 C 1.53002 * 109.47489 * 181.71398 * 4 3 2 7 7 N 1.46502 * 109.46681 * 61.71241 * 4 3 2 8 8 C 1.46501 * 120.00163 * 250.48619 * 7 4 3 9 9 C 1.50700 * 109.47227 * 264.62002 * 8 7 4 10 10 C 1.33388 * 125.20817 * 95.64713 * 9 8 7 11 11 C 1.38430 * 114.92021 * 179.97438 * 10 9 8 12 12 C 1.33382 * 114.92245 * 359.97438 * 11 10 9 13 13 S 1.75882 * 109.59278 * 359.75779 * 12 11 10 14 14 C 1.34774 * 119.99841 * 70.21643 * 7 4 3 15 15 O 1.21286 * 119.99730 * 185.38398 * 14 7 4 16 16 C 1.50701 * 120.00239 * 5.38195 * 14 7 4 17 17 C 1.53002 * 109.46986 * 184.70036 * 16 14 7 18 18 C 1.50697 * 109.46653 * 179.97438 * 17 16 14 19 19 H 1.07995 * 120.00242 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99615 * 180.02562 * 18 17 16 21 21 N 1.31506 * 120.00102 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99700 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47254 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47378 * 119.99898 * 22 20 18 25 25 H 1.48502 * 109.46870 * 239.99757 * 22 20 18 26 26 H 1.09004 * 109.47198 * 299.99548 * 1 2 3 27 27 H 1.09004 * 109.47733 * 59.99732 * 1 2 3 28 28 H 1.09002 * 109.47418 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47374 * 240.00002 * 2 1 3 30 30 H 1.09002 * 109.47398 * 119.99851 * 2 1 3 31 31 H 1.09006 * 109.47034 * 60.00357 * 3 2 1 32 32 H 1.09003 * 109.47408 * 300.00592 * 3 2 1 33 33 H 1.09003 * 109.47012 * 185.48348 * 5 4 3 34 34 H 1.08996 * 109.46960 * 305.48949 * 5 4 3 35 35 H 1.09005 * 109.46937 * 65.48697 * 5 4 3 36 36 H 1.09004 * 109.46726 * 323.28325 * 6 4 3 37 37 H 1.08992 * 109.47012 * 83.28382 * 6 4 3 38 38 H 1.08998 * 109.46790 * 203.28346 * 6 4 3 39 39 H 1.09001 * 109.47091 * 24.61553 * 8 7 4 40 40 H 1.08992 * 109.47199 * 144.61682 * 8 7 4 41 41 H 1.07999 * 122.53588 * 359.95509 * 10 9 8 42 42 H 1.07998 * 122.53417 * 180.02562 * 11 10 9 43 43 H 1.08001 * 125.20221 * 180.02562 * 12 11 10 44 44 H 1.09000 * 109.46479 * 304.69716 * 16 14 7 45 45 H 1.08993 * 109.46900 * 64.69845 * 16 14 7 46 46 H 1.08992 * 109.46896 * 299.99732 * 17 16 14 47 47 H 1.09000 * 109.46818 * 60.00150 * 17 16 14 48 48 H 0.97002 * 119.99852 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0795 0.6844 1.2281 6 6 4.0800 2.8844 0.0438 7 7 4.0587 0.7878 -1.2154 8 6 4.7024 -0.5256 -1.1320 9 6 6.1977 -0.3490 -1.0677 10 6 6.9214 -0.3219 0.0525 11 6 8.2818 -0.1486 -0.1361 12 6 8.6628 -0.0355 -1.4093 13 16 7.2565 -0.1558 -2.4588 14 6 3.9113 1.3913 -2.4114 15 8 4.2264 0.8088 -3.4275 16 6 3.3548 2.7898 -2.4863 17 6 3.1821 3.1921 -3.9523 18 6 2.6250 4.5903 -4.0271 19 1 2.4149 5.1371 -3.1198 20 6 2.3827 5.1711 -5.2540 21 7 2.6382 4.5051 -6.3587 22 14 1.6929 6.9047 -5.3467 23 1 1.4952 7.4329 -3.9730 24 1 2.6440 7.7773 -6.0809 25 1 0.3906 6.8816 -6.0600 26 1 -0.3634 0.5138 0.8901 27 1 -0.3635 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 5.1650 0.7672 1.2814 34 1 3.6377 1.1117 2.1282 35 1 3.7986 -0.3659 1.1488 36 1 3.4246 3.5195 -0.5523 37 1 4.0873 3.2364 1.0753 38 1 5.0912 2.9243 -0.3610 39 1 4.3588 -1.0424 -0.2360 40 1 4.4435 -1.1136 -2.0124 41 1 6.4794 -0.4270 1.0322 42 1 8.9816 -0.1089 0.6855 43 1 9.6799 0.1040 -1.7448 44 1 2.3881 2.8234 -1.9839 45 1 4.0421 3.4808 -1.9984 46 1 4.1487 3.1583 -4.4546 47 1 2.4947 2.5009 -4.4401 48 1 2.4681 4.9138 -7.2218 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362275813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:14 Heat of formation + Delta-G solvation = -1.255564 kcal Electronic energy + Delta-G solvation = -26683.796723 eV Core-core repulsion = 23251.807898 eV Total energy + Delta-G solvation = -3431.988824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44479 -37.74132 -37.16919 -34.05503 -33.54003 -32.33033 -31.01897 -30.02455 -27.81723 -26.64455 -25.97500 -25.12839 -22.98370 -22.09302 -21.45064 -20.31836 -19.25899 -18.20977 -17.20163 -16.57553 -15.99204 -15.64343 -15.53888 -15.08061 -14.69586 -14.42775 -14.25836 -13.77503 -13.57228 -13.07433 -12.94852 -12.81209 -12.73672 -12.62951 -12.30536 -12.18107 -12.13710 -11.97183 -11.88234 -11.64098 -11.49220 -11.18699 -11.01123 -10.86643 -10.74583 -10.61358 -10.54927 -10.45597 -10.23808 -9.71893 -9.43021 -9.14180 -9.00423 -8.60690 -8.39380 -8.33242 -8.27762 -5.93667 -3.97621 1.03893 1.78179 2.19582 2.70767 3.27223 3.33477 3.38587 3.41473 3.44302 4.48575 4.61807 4.76121 4.82851 4.96497 5.02173 5.08640 5.10422 5.23544 5.38045 5.41504 5.42562 5.46003 5.54200 5.58855 5.63784 5.70283 5.77432 5.82227 5.87063 5.95081 5.98310 5.99445 6.12349 6.19731 6.21882 6.28659 6.29844 6.31869 6.38706 6.47360 6.52305 6.86692 6.96480 7.77469 7.81667 7.90888 8.10762 8.42064 8.80774 9.11341 9.65797 11.17310 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004447 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.594474 B = 6295.403254 C = 7864.824548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.173 3.827 5 C -0.162 4.162 6 C -0.178 4.178 7 N -0.609 5.609 8 C 0.178 3.822 9 C -0.187 4.187 10 C -0.141 4.141 11 C -0.141 4.141 12 C -0.231 4.231 13 S 0.148 5.852 14 C 0.516 3.484 15 O -0.528 6.528 16 C -0.144 4.144 17 C 0.036 3.964 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.059 3.941 21 N -0.889 5.889 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.158 0.842 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.023 0.977 47 H 0.020 0.980 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 -11.162 18.696 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.176 4.176 4 C 0.089 3.911 5 C -0.219 4.219 6 C -0.236 4.236 7 N -0.345 5.345 8 C 0.054 3.946 9 C -0.307 4.307 10 C -0.173 4.173 11 C -0.172 4.172 12 C -0.368 4.368 13 S 0.413 5.587 14 C 0.306 3.694 15 O -0.402 6.402 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.717 3.283 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.176 0.824 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.042 0.958 47 H 0.038 0.962 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.200 -11.406 16.348 20.600 hybrid contribution 0.010 0.994 1.463 1.769 sum 5.211 -10.412 17.810 21.278 Atomic orbital electron populations 1.21765 0.95990 1.01280 1.01909 1.21532 0.95717 0.96897 1.01832 1.22286 0.94220 0.97611 1.03512 1.20359 0.93305 0.93031 0.84442 1.22396 1.02232 1.00481 0.96748 1.22811 1.02716 0.95522 1.02550 1.48356 1.59846 1.19140 1.07149 1.19814 0.84727 0.86414 1.03684 1.25052 1.00373 1.09044 0.96203 1.20113 0.93330 1.05215 0.98620 1.20072 0.95879 1.04542 0.96678 1.25801 1.03013 1.10467 0.97500 1.85034 0.95930 1.69112 1.08607 1.21490 0.76863 0.89292 0.81741 1.90656 1.49401 1.66075 1.34102 1.22536 1.00797 0.90670 1.04259 1.18926 0.98003 0.95636 0.87567 1.21244 1.42937 0.99848 0.92194 0.92670 1.25008 0.95756 0.97645 0.95870 1.70007 1.48285 1.37087 0.97410 0.86584 0.78719 0.84920 0.78038 1.19749 1.21051 1.21061 0.92981 0.92447 0.93126 0.91830 0.92261 0.90943 0.90034 0.91293 0.91349 0.91629 0.89385 0.92073 0.91801 0.88589 0.89430 0.84521 0.84932 0.82397 0.89904 0.89015 0.95843 0.96187 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.15 0.37 -1.17 16 2 C -0.12 -1.29 5.40 -26.74 -0.14 -1.43 16 3 C -0.14 -1.57 4.07 -26.73 -0.11 -1.67 16 4 C 0.17 2.00 0.71 -131.82 -0.09 1.91 16 5 C -0.16 -1.40 6.68 37.16 0.25 -1.15 16 6 C -0.18 -2.19 7.07 37.16 0.26 -1.92 16 7 N -0.61 -8.76 1.73 -160.18 -0.28 -9.03 16 8 C 0.18 2.30 4.99 -5.19 -0.03 2.27 16 9 C -0.19 -2.46 6.00 -36.00 -0.22 -2.68 16 10 C -0.14 -1.58 8.91 -41.21 -0.37 -1.94 16 11 C -0.14 -1.54 10.18 -41.21 -0.42 -1.96 16 12 C -0.23 -2.75 11.23 29.04 0.33 -2.43 16 13 S 0.15 2.17 23.33 -107.50 -2.51 -0.33 16 14 C 0.52 9.94 7.17 -10.99 -0.08 9.86 16 15 O -0.53 -12.15 15.62 5.55 0.09 -12.06 16 16 C -0.14 -2.94 3.29 -27.88 -0.09 -3.03 16 17 C 0.04 0.98 4.27 -27.88 -0.12 0.86 16 18 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.49 13.29 55.43 0.74 -26.76 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.78 7.38 -51.93 -0.38 0.40 16 30 H 0.06 0.52 6.52 -51.93 -0.34 0.19 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.13 5.19 -51.93 -0.27 0.86 16 33 H 0.07 0.61 5.17 -51.93 -0.27 0.34 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.52 4.72 -51.93 -0.25 0.27 16 36 H 0.09 1.21 4.80 -51.93 -0.25 0.96 16 37 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 38 H 0.06 0.88 7.79 -51.93 -0.40 0.47 16 39 H 0.10 0.95 5.54 -51.93 -0.29 0.67 16 40 H 0.09 1.28 7.51 -51.93 -0.39 0.89 16 41 H 0.14 1.22 6.38 -52.49 -0.33 0.89 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.08 1.56 4.66 -51.93 -0.24 1.32 16 45 H 0.09 1.78 5.41 -51.93 -0.28 1.50 16 46 H 0.02 0.70 8.05 -51.93 -0.42 0.28 16 47 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -33.06 377.34 -9.62 -42.67 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.45 Total: 1.16 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -0.87 Total: -18.01 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.46 Total: -35.79 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.51 Total: -0.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.06 -9.62 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362275813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.415 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds