Wall clock time and date at job start Tue Mar 31 2020 13:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36295 * 119.93472 * 2 1 4 4 C 1.38904 * 121.17389 * 180.02562 * 3 2 1 5 5 C 1.38719 * 120.65193 * 359.97233 * 4 3 2 6 6 C 1.47455 * 120.37659 * 180.02562 * 5 4 3 7 7 O 1.21606 * 120.00193 * 123.20027 * 6 5 4 8 8 N 1.34773 * 120.00240 * 303.20329 * 6 5 4 9 9 C 1.46508 * 119.99866 * 4.95970 * 8 6 5 10 10 C 1.50692 * 109.47369 * 90.00158 * 9 8 6 11 11 H 1.08003 * 120.00132 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00085 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00088 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00183 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47099 * 89.99166 * 14 12 10 16 16 H 1.48494 * 109.47498 * 209.99770 * 14 12 10 17 17 H 1.48501 * 109.47000 * 330.00092 * 14 12 10 18 18 C 1.46500 * 120.00428 * 184.95689 * 8 6 5 19 19 C 1.53002 * 109.46950 * 94.64211 * 18 8 6 20 20 C 1.53005 * 117.49957 * 246.16157 * 19 18 8 21 21 C 1.52997 * 117.50047 * 177.50126 * 19 18 8 22 22 C 1.41738 * 119.24666 * 0.02562 * 5 4 3 23 23 C 1.40133 * 121.26347 * 180.02562 * 22 5 4 24 24 C 1.36257 * 119.68911 * 179.97438 * 23 22 5 25 25 C 1.39295 * 120.93698 * 0.02562 * 24 23 22 26 26 C 1.36133 * 120.94794 * 359.95638 * 25 24 23 27 27 C 1.40549 * 119.94111 * 179.72577 * 2 1 3 28 28 H 1.08996 * 109.47409 * 90.00419 * 1 2 3 29 29 H 1.09007 * 109.47388 * 330.00094 * 1 2 3 30 30 H 1.09001 * 109.47167 * 210.00502 * 1 2 3 31 31 H 1.08005 * 119.41150 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.67502 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46819 * 210.00117 * 9 8 6 34 34 H 1.08997 * 109.46814 * 329.99854 * 9 8 6 35 35 H 0.96996 * 120.00022 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.47561 * 214.64044 * 18 8 6 37 37 H 1.09000 * 109.46930 * 334.64705 * 18 8 6 38 38 H 1.09001 * 115.55010 * 31.82502 * 19 18 8 39 39 H 1.08997 * 117.49643 * 359.97438 * 20 19 18 40 40 H 1.08994 * 117.49757 * 145.01993 * 20 19 18 41 41 H 1.08999 * 117.49905 * 214.97621 * 21 19 18 42 42 H 1.09001 * 117.49869 * 359.97438 * 21 19 18 43 43 H 1.08002 * 120.15798 * 359.95714 * 23 22 5 44 44 H 1.07999 * 119.53164 * 179.97438 * 24 23 22 45 45 H 1.07998 * 119.52785 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.17668 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1811 0.0000 4 6 3.5758 1.2112 -0.0005 5 6 4.3087 0.0334 -0.0005 6 6 5.7827 0.0723 -0.0005 7 8 6.4058 -0.4880 0.8807 8 7 6.4395 0.7290 -0.9771 9 6 5.6906 1.4948 -1.9767 10 6 5.5098 2.9105 -1.4930 11 1 5.9120 3.2099 -0.5365 12 6 4.8299 3.8233 -2.2712 13 7 4.3396 3.4586 -3.4358 14 14 4.6051 5.5780 -1.6713 15 1 5.7464 6.4088 -2.1323 16 1 3.3390 6.1295 -2.2173 17 1 4.5513 5.5908 -0.1873 18 6 7.9023 0.6773 -1.0391 19 6 8.3331 -0.4397 -1.9919 20 6 9.0701 -1.6374 -1.3891 21 6 9.8323 -0.6180 -2.2394 22 6 3.6245 -1.2080 -0.0005 23 6 4.3225 -2.4231 0.0001 24 6 3.6323 -3.5979 0.0006 25 6 2.2394 -3.6100 0.0001 26 6 1.5291 -2.4487 -0.0001 27 6 2.2085 -1.2179 0.0058 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 0.8900 0.5138 30 1 -0.3633 -0.8899 0.5139 31 1 1.6365 2.1103 0.0004 32 1 4.0901 2.1609 -0.0009 33 1 6.2409 1.4998 -2.9176 34 1 4.7140 1.0354 -2.1294 35 1 3.8616 4.1009 -3.9833 36 1 8.2846 1.6315 -1.4015 37 1 8.3014 0.4801 -0.0442 38 1 7.6588 -0.6317 -2.8266 39 1 9.2483 -1.6294 -0.3139 40 1 8.8810 -2.6172 -1.8275 41 1 10.1444 -0.9278 -3.2368 42 1 10.5118 0.0606 -1.7238 43 1 5.4025 -2.4284 -0.0002 44 1 4.1728 -4.5329 0.0006 45 1 1.7153 -4.5544 0.0001 46 1 0.4494 -2.4726 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412172260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:07 Heat of formation + Delta-G solvation = 27.484709 kcal Electronic energy + Delta-G solvation = -27623.100096 eV Core-core repulsion = 24056.913592 eV Total energy + Delta-G solvation = -3566.186504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39471 -38.82900 -36.91253 -36.19908 -34.71261 -33.29008 -32.54402 -29.95863 -29.72996 -28.13680 -27.28376 -25.70283 -23.09760 -22.98583 -22.56481 -22.10667 -21.45267 -20.12599 -18.63143 -17.31136 -16.62687 -16.53435 -16.29696 -15.81035 -14.99028 -14.63644 -14.47615 -14.40394 -14.02726 -13.88161 -13.71641 -13.23514 -13.00231 -12.94823 -12.50677 -12.49025 -12.21597 -11.92836 -11.85138 -11.72478 -11.45364 -11.28602 -11.27117 -10.96840 -10.90251 -10.73501 -10.57105 -10.47410 -10.26267 -10.10988 -9.76237 -9.62215 -9.39399 -9.04738 -8.61417 -8.19792 -7.76261 -7.35474 -6.23878 -4.30904 0.79062 1.44007 2.27634 3.17510 3.24893 3.25957 3.29433 3.50971 3.84054 4.16066 4.27274 4.51403 4.89404 5.04446 5.07432 5.08339 5.15146 5.22523 5.25410 5.29395 5.35768 5.45586 5.59040 5.68568 5.73620 5.77239 5.78758 5.83927 5.90874 6.01717 6.10305 6.12864 6.19967 6.25453 6.35111 6.36912 6.49321 6.55036 6.57878 6.70643 6.76265 6.79017 6.96269 7.08065 7.17095 7.20811 7.42742 7.52897 7.69896 8.00591 8.28654 8.72673 8.96363 9.34651 10.82176 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008229 B = 0.006518 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.912706 B = 4294.739587 C = 7085.196237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.072 4.072 3 C -0.114 4.114 4 C -0.049 4.049 5 C -0.118 4.118 6 C 0.566 3.434 7 O -0.566 6.566 8 N -0.586 5.586 9 C 0.234 3.766 10 C -0.540 4.540 11 H 0.063 0.937 12 C 0.070 3.930 13 N -0.882 5.882 14 Si 0.890 3.110 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.148 3.852 19 C -0.161 4.161 20 C -0.177 4.177 21 C -0.179 4.179 22 C -0.013 4.013 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.127 4.127 26 C -0.108 4.108 27 C -0.058 4.058 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.161 0.839 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.266 0.734 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.775 -9.077 3.420 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.072 4.072 3 C -0.132 4.132 4 C -0.067 4.067 5 C -0.121 4.121 6 C 0.354 3.646 7 O -0.447 6.447 8 N -0.315 5.315 9 C 0.114 3.886 10 C -0.579 4.579 11 H 0.081 0.919 12 C -0.134 4.134 13 N -0.519 5.519 14 Si 0.718 3.282 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.196 1.196 18 C 0.024 3.976 19 C -0.180 4.180 20 C -0.214 4.214 21 C -0.216 4.216 22 C -0.014 4.014 23 C -0.114 4.114 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.058 4.058 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.179 0.821 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.554 -9.273 3.676 10.297 hybrid contribution -0.156 1.117 -0.095 1.132 sum -2.710 -8.156 3.581 9.311 Atomic orbital electron populations 1.20818 0.91315 1.02536 1.02383 1.19796 0.95694 0.92426 0.99262 1.20715 0.94361 0.97397 1.00774 1.22115 0.93742 0.99594 0.91237 1.19819 0.93300 0.93265 1.05747 1.18105 0.86920 0.78080 0.81481 1.90684 1.69021 1.47715 1.37279 1.48125 1.06089 1.48198 1.29039 1.19519 0.92206 0.90233 0.86624 1.21439 1.36423 0.94969 1.05027 0.91908 1.24919 0.95110 0.98709 0.94695 1.69927 1.35893 1.35293 1.10829 0.86608 0.77840 0.84507 0.79294 1.20415 1.20953 1.19575 1.20869 0.81022 0.97117 0.98548 1.22784 0.94395 0.98825 1.01996 1.22986 1.04737 0.94178 0.99532 1.22895 0.94525 1.03175 1.01022 1.17791 0.92168 0.92619 0.98836 1.21128 1.00439 0.91560 0.98234 1.20781 0.94242 0.97848 1.01448 1.20727 0.94201 0.97889 1.01662 1.20976 0.99422 0.91592 1.00615 1.17766 0.92058 0.93346 1.02611 0.91012 0.91420 0.91578 0.85821 0.82131 0.94617 0.93950 0.92422 0.89983 0.90426 0.87793 0.88709 0.89490 0.89146 0.88907 0.85315 0.86463 0.86526 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.52 36.00 0.34 -1.01 16 2 C -0.07 -1.15 5.89 -104.45 -0.62 -1.77 16 3 C -0.11 -2.03 9.56 -40.03 -0.38 -2.41 16 4 C -0.05 -1.00 7.78 -39.16 -0.30 -1.30 16 5 C -0.12 -2.48 4.64 -104.63 -0.49 -2.96 16 6 C 0.57 12.37 6.35 -12.51 -0.08 12.29 16 7 O -0.57 -13.08 15.40 5.27 0.08 -12.99 16 8 N -0.59 -12.46 2.46 -176.32 -0.43 -12.89 16 9 C 0.23 5.50 4.73 -5.19 -0.02 5.48 16 10 C -0.54 -13.36 6.60 -34.44 -0.23 -13.59 16 11 H 0.06 1.58 7.76 -52.48 -0.41 1.17 16 12 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 13 N -0.88 -23.47 13.29 55.43 0.74 -22.73 16 14 Si 0.89 19.66 29.54 -169.99 -5.02 14.63 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 C 0.15 2.75 5.77 -4.04 -0.02 2.73 16 19 C -0.16 -2.62 6.01 -90.62 -0.54 -3.17 16 20 C -0.18 -2.55 10.18 -26.69 -0.27 -2.82 16 21 C -0.18 -2.38 10.25 -26.69 -0.27 -2.65 16 22 C -0.01 -0.26 5.76 -106.56 -0.61 -0.87 16 23 C -0.10 -1.70 9.23 -39.58 -0.37 -2.07 16 24 C -0.13 -1.83 9.95 -39.90 -0.40 -2.23 16 25 C -0.13 -1.69 9.95 -39.95 -0.40 -2.09 16 26 C -0.11 -1.53 9.27 -39.45 -0.37 -1.89 16 27 C -0.06 -0.99 5.74 -106.86 -0.61 -1.60 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.07 0.67 6.39 -51.93 -0.33 0.34 16 31 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 32 H 0.16 3.54 5.24 -52.49 -0.28 3.26 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.07 6.15 -51.93 -0.32 0.75 16 35 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 37 H 0.08 1.45 6.97 -51.93 -0.36 1.09 16 38 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.09 1.40 8.04 -51.93 -0.42 0.98 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.13 2.40 6.51 -52.49 -0.34 2.06 16 44 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.39 6.34 -52.49 -0.33 1.06 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -28.29 375.50 -11.28 -39.57 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.56 Total: 9.02 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -5.74 Total: -20.28 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.30 Total: -35.62 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.29 -11.28 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412172260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.059 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds