Wall clock time and date at job start Tue Mar 31 2020 13:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36295 * 119.93472 * 2 1 4 4 C 1.38904 * 121.17389 * 180.02562 * 3 2 1 5 5 C 1.38719 * 120.65193 * 359.97233 * 4 3 2 6 6 C 1.47455 * 120.37659 * 180.02562 * 5 4 3 7 7 O 1.21606 * 120.00193 * 123.20027 * 6 5 4 8 8 N 1.34773 * 120.00240 * 303.20329 * 6 5 4 9 9 C 1.46508 * 119.99866 * 4.95970 * 8 6 5 10 10 C 1.50692 * 109.47369 * 90.00158 * 9 8 6 11 11 H 1.08003 * 120.00132 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00085 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00088 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00183 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47099 * 89.99166 * 14 12 10 16 16 H 1.48494 * 109.47498 * 209.99770 * 14 12 10 17 17 H 1.48501 * 109.47000 * 330.00092 * 14 12 10 18 18 C 1.46500 * 120.00428 * 184.95689 * 8 6 5 19 19 C 1.53002 * 109.46950 * 94.64211 * 18 8 6 20 20 C 1.53005 * 117.49957 * 246.16157 * 19 18 8 21 21 C 1.52997 * 117.50047 * 177.50126 * 19 18 8 22 22 C 1.41738 * 119.24666 * 0.02562 * 5 4 3 23 23 C 1.40133 * 121.26347 * 180.02562 * 22 5 4 24 24 C 1.36257 * 119.68911 * 179.97438 * 23 22 5 25 25 C 1.39295 * 120.93698 * 0.02562 * 24 23 22 26 26 C 1.36133 * 120.94794 * 359.95638 * 25 24 23 27 27 C 1.40549 * 119.94111 * 179.72577 * 2 1 3 28 28 H 1.08996 * 109.47409 * 90.00419 * 1 2 3 29 29 H 1.09007 * 109.47388 * 330.00094 * 1 2 3 30 30 H 1.09001 * 109.47167 * 210.00502 * 1 2 3 31 31 H 1.08005 * 119.41150 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.67502 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46819 * 210.00117 * 9 8 6 34 34 H 1.08997 * 109.46814 * 329.99854 * 9 8 6 35 35 H 0.96996 * 120.00022 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.47561 * 214.64044 * 18 8 6 37 37 H 1.09000 * 109.46930 * 334.64705 * 18 8 6 38 38 H 1.09001 * 115.55010 * 31.82502 * 19 18 8 39 39 H 1.08997 * 117.49643 * 359.97438 * 20 19 18 40 40 H 1.08994 * 117.49757 * 145.01993 * 20 19 18 41 41 H 1.08999 * 117.49905 * 214.97621 * 21 19 18 42 42 H 1.09001 * 117.49869 * 359.97438 * 21 19 18 43 43 H 1.08002 * 120.15798 * 359.95714 * 23 22 5 44 44 H 1.07999 * 119.53164 * 179.97438 * 24 23 22 45 45 H 1.07998 * 119.52785 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.17668 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1811 0.0000 4 6 3.5758 1.2112 -0.0005 5 6 4.3087 0.0334 -0.0005 6 6 5.7827 0.0723 -0.0005 7 8 6.4058 -0.4880 0.8807 8 7 6.4395 0.7290 -0.9771 9 6 5.6906 1.4948 -1.9767 10 6 5.5098 2.9105 -1.4930 11 1 5.9120 3.2099 -0.5365 12 6 4.8299 3.8233 -2.2712 13 7 4.3396 3.4586 -3.4358 14 14 4.6051 5.5780 -1.6713 15 1 5.7464 6.4088 -2.1323 16 1 3.3390 6.1295 -2.2173 17 1 4.5513 5.5908 -0.1873 18 6 7.9023 0.6773 -1.0391 19 6 8.3331 -0.4397 -1.9919 20 6 9.0701 -1.6374 -1.3891 21 6 9.8323 -0.6180 -2.2394 22 6 3.6245 -1.2080 -0.0005 23 6 4.3225 -2.4231 0.0001 24 6 3.6323 -3.5979 0.0006 25 6 2.2394 -3.6100 0.0001 26 6 1.5291 -2.4487 -0.0001 27 6 2.2085 -1.2179 0.0058 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3634 0.8900 0.5138 30 1 -0.3633 -0.8899 0.5139 31 1 1.6365 2.1103 0.0004 32 1 4.0901 2.1609 -0.0009 33 1 6.2409 1.4998 -2.9176 34 1 4.7140 1.0354 -2.1294 35 1 3.8616 4.1009 -3.9833 36 1 8.2846 1.6315 -1.4015 37 1 8.3014 0.4801 -0.0442 38 1 7.6588 -0.6317 -2.8266 39 1 9.2483 -1.6294 -0.3139 40 1 8.8810 -2.6172 -1.8275 41 1 10.1444 -0.9278 -3.2368 42 1 10.5118 0.0606 -1.7238 43 1 5.4025 -2.4284 -0.0002 44 1 4.1728 -4.5329 0.0006 45 1 1.7153 -4.5544 0.0001 46 1 0.4494 -2.4726 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412172260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:06 Heat of formation + Delta-G solvation = 15.738665 kcal Electronic energy + Delta-G solvation = -27623.609442 eV Core-core repulsion = 24056.913592 eV Total energy + Delta-G solvation = -3566.695851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80614 -40.34894 -38.25741 -37.50477 -36.43122 -34.59241 -34.46487 -31.25599 -30.93172 -29.75302 -28.88713 -27.12344 -24.98340 -24.25188 -23.87511 -23.25639 -22.82977 -21.48253 -20.17442 -18.81512 -18.39169 -18.00725 -17.77448 -17.32503 -16.53919 -16.15140 -16.03208 -15.79313 -15.30547 -15.13848 -14.91587 -14.63882 -14.48329 -14.37725 -14.18393 -13.76980 -13.58017 -13.45284 -13.31520 -13.04659 -12.82612 -12.77246 -12.65923 -12.59605 -12.37782 -12.21098 -11.93250 -11.90235 -11.79079 -11.70107 -11.35804 -10.93534 -10.75711 -10.66200 -10.53229 -9.54336 -9.50418 -8.67121 -8.21241 -6.34769 -0.52289 0.13902 0.94455 1.39686 1.42412 1.51356 1.71676 2.08105 2.26308 2.43311 2.90633 3.07849 3.18328 3.59480 3.78938 3.85353 3.88218 3.97494 4.07034 4.10671 4.12166 4.18607 4.34984 4.45182 4.45444 4.60029 4.64747 4.71061 4.72743 4.77196 4.82888 4.86951 4.88194 4.97100 5.05744 5.16934 5.17383 5.22820 5.24386 5.26799 5.30839 5.40022 5.51435 5.61731 5.64137 5.72491 5.81448 5.93558 6.02989 6.13280 6.47984 6.76115 7.21394 7.35930 8.84775 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008229 B = 0.006518 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.912706 B = 4294.739587 C = 7085.196237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.142 4.142 4 C -0.061 4.061 5 C -0.155 4.155 6 C 0.564 3.436 7 O -0.587 6.587 8 N -0.589 5.589 9 C 0.257 3.743 10 C -0.541 4.541 11 H 0.053 0.947 12 C 0.031 3.969 13 N -0.913 5.913 14 Si 0.950 3.050 15 H -0.275 1.275 16 H -0.277 1.277 17 H -0.269 1.269 18 C 0.147 3.853 19 C -0.187 4.187 20 C -0.172 4.172 21 C -0.150 4.150 22 C -0.033 4.033 23 C -0.134 4.134 24 C -0.107 4.107 25 C -0.123 4.123 26 C -0.100 4.100 27 C -0.079 4.079 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.017 0.983 34 H 0.022 0.978 35 H 0.268 0.732 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.146 0.854 45 H 0.162 0.838 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 -10.794 3.580 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.053 4.053 3 C -0.160 4.160 4 C -0.079 4.079 5 C -0.158 4.158 6 C 0.354 3.646 7 O -0.471 6.471 8 N -0.317 5.317 9 C 0.136 3.864 10 C -0.579 4.579 11 H 0.071 0.929 12 C -0.170 4.170 13 N -0.551 5.551 14 Si 0.775 3.225 15 H -0.201 1.201 16 H -0.203 1.203 17 H -0.193 1.193 18 C 0.025 3.975 19 C -0.206 4.206 20 C -0.209 4.209 21 C -0.187 4.187 22 C -0.034 4.034 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.140 4.140 26 C -0.117 4.117 27 C -0.079 4.079 28 H 0.103 0.897 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.164 0.836 45 H 0.180 0.820 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.595 -10.990 3.838 12.515 hybrid contribution 0.438 1.491 -0.122 1.559 sum -4.157 -9.499 3.716 11.014 Atomic orbital electron populations 1.20949 0.87625 1.04594 1.03717 1.20305 0.98146 0.91288 0.95598 1.20869 0.93255 0.99109 1.02777 1.21939 0.95244 0.98276 0.92481 1.19857 0.92591 0.94594 1.08720 1.18386 0.87748 0.77470 0.81017 1.90632 1.69747 1.48703 1.37975 1.48133 1.07140 1.47931 1.28490 1.19069 0.91078 0.89988 0.86259 1.21478 1.36341 0.95528 1.04547 0.92898 1.25560 0.94639 1.02140 0.94667 1.70023 1.36674 1.36557 1.11843 0.85672 0.77903 0.80075 0.78833 1.20102 1.20255 1.19317 1.20957 0.79547 0.98079 0.98955 1.22587 0.96608 0.99664 1.01771 1.23014 1.04015 0.94319 0.99510 1.23024 0.91995 1.01836 1.01894 1.18053 0.93684 0.92268 0.99408 1.21057 0.99648 0.92661 1.01812 1.21202 0.95465 0.97606 0.98208 1.21229 0.93436 0.99628 0.99714 1.21433 1.01357 0.90300 0.98603 1.18159 0.91256 0.95306 1.03211 0.89717 0.89994 0.88996 0.84417 0.84800 0.96506 0.96016 0.92235 0.90349 0.90902 0.89402 0.89315 0.88198 0.87074 0.87634 0.87664 0.83633 0.82037 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.52 71.24 0.68 -1.59 16 2 C -0.05 -1.65 5.89 -19.75 -0.12 -1.76 16 3 C -0.14 -5.17 9.56 21.98 0.21 -4.96 16 4 C -0.06 -2.67 7.78 22.54 0.18 -2.49 16 5 C -0.15 -6.96 4.64 -19.87 -0.09 -7.05 16 6 C 0.56 26.73 6.35 86.67 0.55 27.28 16 7 O -0.59 -29.21 15.40 -4.05 -0.06 -29.27 16 8 N -0.59 -27.12 2.46 -830.01 -2.04 -29.16 16 9 C 0.26 13.01 4.73 85.63 0.41 13.41 16 10 C -0.54 -28.27 6.60 25.60 0.17 -28.10 16 11 H 0.05 2.82 7.76 -2.91 -0.02 2.80 16 12 C 0.03 1.63 5.46 84.65 0.46 2.10 16 13 N -0.91 -50.04 13.29 21.45 0.28 -49.76 16 14 Si 0.95 41.18 29.54 68.60 2.03 43.20 16 15 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 C 0.15 5.86 5.77 86.38 0.50 6.36 16 19 C -0.19 -6.39 6.01 -10.79 -0.06 -6.45 16 20 C -0.17 -4.96 10.18 30.62 0.31 -4.65 16 21 C -0.15 -3.87 10.25 30.62 0.31 -3.55 16 22 C -0.03 -1.33 5.76 -21.12 -0.12 -1.46 16 23 C -0.13 -4.88 9.23 22.27 0.21 -4.68 16 24 C -0.11 -2.91 9.95 22.06 0.22 -2.69 16 25 C -0.12 -2.73 9.95 22.03 0.22 -2.51 16 26 C -0.10 -2.42 9.27 22.35 0.21 -2.21 16 27 C -0.08 -2.61 5.74 -21.31 -0.12 -2.74 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.45 8.08 -2.38 -0.02 1.43 16 30 H 0.09 1.39 6.39 -2.39 -0.02 1.37 16 31 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 32 H 0.13 6.43 5.24 -2.91 -0.02 6.41 16 33 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 34 H 0.02 1.19 6.15 -2.39 -0.01 1.18 16 35 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 36 H 0.08 3.08 8.11 -2.39 -0.02 3.06 16 37 H 0.07 2.92 6.97 -2.39 -0.02 2.91 16 38 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.09 2.68 8.04 -2.39 -0.02 2.66 16 40 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.11 4.23 6.51 -2.91 -0.02 4.21 16 44 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 45 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 46 H 0.16 2.66 6.34 -2.91 -0.02 2.64 16 Total: -1.00 -66.22 375.50 5.30 -60.92 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.98 Total: 31.82 kcal Atomic # 6 Polarization: -31.85 SS G_CDS: 4.11 Total: -27.74 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -1.75 Total: -78.92 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.06 Total: -29.27 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Total: -66.22 5.30 -60.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412172260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.654 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds