Wall clock time and date at job start Tue Mar 31 2020 13:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38229 * 119.99733 * 2 1 4 4 C 1.38239 * 119.99969 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00256 * 179.97438 * 4 3 2 6 6 C 1.38237 * 119.99978 * 0.02562 * 4 3 2 7 7 C 1.38239 * 119.99868 * 359.97438 * 6 4 3 8 8 C 1.50695 * 119.99971 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.46881 * 90.00274 * 8 7 6 10 10 C 1.50704 * 109.47292 * 180.02562 * 9 8 7 11 11 O 1.21290 * 119.99958 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99765 * 180.02562 * 10 9 8 13 13 C 1.39944 * 119.99438 * 174.88905 * 12 10 9 14 14 C 1.39288 * 119.94174 * 145.78227 * 13 12 10 15 15 C 1.38486 * 120.42880 * 179.97438 * 14 13 12 16 16 C 1.37690 * 120.31860 * 359.97438 * 15 14 13 17 17 C 1.40731 * 119.88429 * 0.02562 * 16 15 14 18 18 C 1.41416 * 120.21101 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00322 * 205.17244 * 18 17 16 20 20 C 1.39939 * 119.99465 * 25.17034 * 18 17 16 21 21 N 1.30830 * 120.00083 * 16.80696 * 20 18 17 22 22 Si 1.86796 * 119.99536 * 196.80400 * 20 18 17 23 23 H 1.48492 * 109.47479 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47005 * 120.00503 * 22 20 18 25 25 H 1.48506 * 109.46907 * 240.00165 * 22 20 18 26 26 C 1.38237 * 119.94908 * 325.50850 * 13 12 10 27 27 C 1.38235 * 119.99857 * 0.26021 * 7 6 4 28 28 H 1.09000 * 109.47579 * 90.00549 * 1 2 3 29 29 H 1.09007 * 109.46759 * 209.99917 * 1 2 3 30 30 H 1.08990 * 109.47454 * 329.99860 * 1 2 3 31 31 H 1.07995 * 120.00631 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46937 * 270.02835 * 5 4 3 33 33 H 1.09004 * 109.46516 * 30.02271 * 5 4 3 34 34 H 1.09000 * 109.47031 * 150.02380 * 5 4 3 35 35 H 1.07997 * 120.00297 * 179.97438 * 6 4 3 36 36 H 1.08999 * 109.47400 * 209.99984 * 8 7 6 37 37 H 1.08998 * 109.47590 * 330.00525 * 8 7 6 38 38 H 1.08994 * 109.47454 * 300.00434 * 9 8 7 39 39 H 1.09010 * 109.47061 * 59.99976 * 9 8 7 40 40 H 0.96996 * 120.00588 * 354.88766 * 12 10 9 41 41 H 1.08001 * 119.79117 * 359.97438 * 14 13 12 42 42 H 1.08005 * 119.84381 * 180.02562 * 15 14 13 43 43 H 1.08008 * 120.05631 * 179.97438 * 16 15 14 44 44 H 0.96998 * 119.99878 * 180.02562 * 21 20 18 45 45 H 1.07995 * 120.16178 * 359.97438 * 26 13 12 46 46 H 1.08007 * 119.99994 * 179.71791 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0000 -0.0016 7 6 3.5805 -1.1971 -0.0016 8 6 4.3340 -2.5022 -0.0034 9 6 4.5906 -2.9448 1.4386 10 6 5.3447 -4.2496 1.4369 11 8 5.6468 -4.7742 0.3859 12 7 5.6826 -4.8341 2.6034 13 6 6.2872 -6.0962 2.6042 14 6 7.2391 -6.4104 3.5714 15 6 7.8434 -7.6564 3.5819 16 6 7.5090 -8.5991 2.6357 17 6 6.5490 -8.2958 1.6524 18 6 6.2008 -9.2586 0.6770 19 1 5.8084 -8.9423 -0.2781 20 6 6.3646 -10.6214 0.9495 21 7 6.5187 -11.0279 2.1834 22 14 6.3633 -11.8601 -0.4487 23 1 6.1737 -11.1500 -1.7390 24 1 7.6591 -12.5851 -0.4690 25 1 5.2565 -12.8300 -0.2497 26 6 5.9348 -7.0309 1.6487 27 6 2.1982 -1.1971 -0.0060 28 1 -0.3634 -0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3634 0.8899 0.5138 31 1 1.6582 2.1324 0.0004 32 1 4.5148 2.8169 -1.0289 33 1 3.7452 3.2619 0.5132 34 1 5.2868 2.3720 0.5120 35 1 5.3517 0.0000 -0.0024 36 1 3.7444 -3.2615 -0.5170 37 1 5.2859 -2.3715 -0.5181 38 1 5.1802 -2.1855 1.9523 39 1 3.6387 -3.0755 1.9534 40 1 5.5066 -4.3801 3.4423 41 1 7.5076 -5.6776 4.3180 42 1 8.5800 -7.8901 4.3365 43 1 7.9833 -9.5694 2.6477 44 1 6.6326 -11.9725 2.3722 45 1 5.1934 -6.7898 0.9014 46 1 1.6582 -2.1325 -0.0106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456729972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:04 Heat of formation + Delta-G solvation = -18.548744 kcal Electronic energy + Delta-G solvation = -25250.098613 eV Core-core repulsion = 21681.915949 eV Total energy + Delta-G solvation = -3568.182664 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.02115 -39.46557 -37.21241 -34.68021 -34.27908 -33.72167 -33.00404 -30.61846 -29.80283 -28.16920 -27.44699 -26.87718 -25.31348 -24.73044 -21.56027 -20.92238 -20.84491 -20.29649 -19.46408 -17.68042 -16.75415 -16.38053 -16.11187 -15.56500 -15.18322 -14.93699 -14.55922 -14.49632 -14.30417 -13.73691 -13.47267 -13.42649 -13.11472 -13.08864 -12.84553 -12.79160 -12.73252 -12.41029 -12.21641 -12.04899 -11.63923 -11.43209 -11.33862 -11.16123 -11.10541 -11.02370 -10.90499 -10.87815 -10.43695 -10.13428 -9.64139 -9.38411 -9.06147 -8.96246 -8.71753 -8.69645 -7.43272 -6.89591 -6.69510 -4.31841 1.19234 1.20071 2.62379 2.84803 3.11018 3.17932 3.20893 3.39698 3.49082 3.73477 3.98416 4.54776 4.57786 4.62218 4.66598 4.95433 4.98142 5.08705 5.10719 5.13069 5.23651 5.31138 5.36545 5.37272 5.51012 5.56011 5.58932 5.61561 5.75142 5.79585 5.93667 6.05078 6.17659 6.26569 6.38353 6.40525 6.41062 6.54407 6.79956 6.88083 7.04485 7.07587 7.09491 7.27468 7.58782 7.75355 7.99590 8.11675 8.20835 8.28907 8.65371 8.77406 8.96306 9.00833 10.23433 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.002220 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.403528 B =12611.156203 C =13433.132656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.123 4.123 7 C -0.069 4.069 8 C -0.066 4.066 9 C -0.131 4.131 10 C 0.502 3.498 11 O -0.518 6.518 12 N -0.670 5.670 13 C 0.151 3.849 14 C -0.262 4.262 15 C -0.093 4.093 16 C -0.172 4.172 17 C 0.119 3.881 18 C -0.457 4.457 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.210 4.210 27 C -0.122 4.122 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.279 0.721 45 H 0.105 0.895 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 21.257 -0.828 22.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.083 4.083 5 C -0.171 4.171 6 C -0.141 4.141 7 C -0.069 4.069 8 C -0.104 4.104 9 C -0.172 4.172 10 C 0.289 3.711 11 O -0.393 6.393 12 N -0.314 5.314 13 C 0.060 3.940 14 C -0.284 4.284 15 C -0.112 4.112 16 C -0.192 4.192 17 C 0.116 3.884 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.421 5.421 22 Si 0.732 3.268 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.231 4.231 27 C -0.140 4.140 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.232 0.768 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.137 0.863 44 H 0.090 0.910 45 H 0.123 0.877 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.693 20.687 -1.470 22.120 hybrid contribution -0.095 -0.395 0.044 0.408 sum -7.788 20.293 -1.427 21.783 Atomic orbital electron populations 1.20792 0.91282 1.02733 1.02307 1.19888 0.95963 0.93098 0.99285 1.20855 0.93500 0.97401 1.02906 1.19883 0.93801 0.95239 0.99382 1.20787 0.99919 0.94084 1.02277 1.20951 0.99760 0.91406 1.01942 1.19926 0.93684 0.94980 0.98307 1.20347 1.00978 0.93421 0.95662 1.21627 1.01340 0.95279 0.98916 1.20646 0.79934 0.86493 0.84038 1.90755 1.52911 1.64705 1.30959 1.43512 1.60691 1.18753 1.08468 1.17446 0.95037 0.83075 0.98483 1.20047 1.05297 0.98690 1.04338 1.20468 0.98915 0.93435 0.98363 1.21345 1.00470 0.99359 0.98022 1.17505 0.88737 0.90740 0.91437 1.19610 1.37763 0.90181 1.01161 0.90341 1.25908 0.92366 0.99724 0.96214 1.69837 1.35445 1.17280 1.19572 0.86271 0.78531 0.79886 0.82106 1.18356 1.19722 1.20038 1.20966 1.05080 0.94644 1.02452 1.20973 0.93608 0.97645 1.01775 0.91218 0.91439 0.91689 0.86434 0.91242 0.91690 0.91495 0.86076 0.89936 0.90034 0.89120 0.88927 0.76841 0.89347 0.89072 0.86324 0.91021 0.87670 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.08 -0.78 5.88 -104.63 -0.62 -1.40 16 3 C -0.13 -1.18 9.36 -39.58 -0.37 -1.55 16 4 C -0.08 -0.78 5.88 -104.62 -0.62 -1.39 16 5 C -0.11 -0.78 10.01 36.01 0.36 -0.42 16 6 C -0.12 -1.26 9.36 -39.58 -0.37 -1.63 16 7 C -0.07 -0.76 5.13 -104.63 -0.54 -1.29 16 8 C -0.07 -0.81 4.64 -27.88 -0.13 -0.94 16 9 C -0.13 -1.57 5.68 -27.88 -0.16 -1.73 16 10 C 0.50 8.75 7.56 -10.98 -0.08 8.67 16 11 O -0.52 -11.42 13.73 5.55 0.08 -11.35 16 12 N -0.67 -11.94 5.34 -9.91 -0.05 -11.99 16 13 C 0.15 3.47 6.25 -83.76 -0.52 2.94 16 14 C -0.26 -5.86 9.97 -39.10 -0.39 -6.25 16 15 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 16 C -0.17 -4.59 8.69 -38.84 -0.34 -4.92 16 17 C 0.12 3.31 5.57 -106.85 -0.59 2.72 16 18 C -0.46 -12.70 9.05 -37.74 -0.34 -13.04 16 19 H 0.08 2.15 7.90 -52.49 -0.41 1.74 16 20 C 0.07 1.94 5.16 -17.34 -0.09 1.85 16 21 N -0.80 -20.92 10.94 55.55 0.61 -20.31 16 22 Si 0.91 19.27 29.59 -169.99 -5.03 14.24 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 C -0.21 -5.51 8.39 -38.69 -0.32 -5.84 16 27 C -0.12 -1.28 9.36 -39.58 -0.37 -1.65 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 37 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 40 H 0.40 5.46 8.82 -40.82 -0.36 5.10 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 43 H 0.12 3.23 6.17 -52.48 -0.32 2.91 16 44 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 45 H 0.11 2.83 6.48 -52.49 -0.34 2.49 16 46 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -31.67 385.83 -11.01 -42.68 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.89 Total: 9.84 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: -5.53 Total: -28.92 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.55 Total: -32.30 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.67 -11.01 -42.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456729972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.126 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds