Wall clock time and date at job start Tue Mar 31 2020 14:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.47050 * 2 1 4 4 C 1.38281 * 119.93135 * 90.00060 * 3 2 1 5 5 C 1.38111 * 120.07061 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.93160 * 0.02562 * 5 4 3 7 7 N 1.39921 * 120.07282 * 180.02562 * 6 5 4 8 8 C 1.34783 * 119.99896 * 34.72752 * 7 6 5 9 9 O 1.21288 * 119.99924 * 5.41889 * 8 7 6 10 10 C 1.50692 * 119.99925 * 185.42015 * 8 7 6 11 11 C 1.53002 * 109.47252 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.47060 * 305.00067 * 11 10 8 13 13 C 1.50699 * 109.47118 * 64.99394 * 11 10 8 14 14 H 1.07995 * 119.99801 * 34.91873 * 13 11 10 15 15 C 1.37871 * 120.00067 * 214.90754 * 13 11 10 16 16 N 1.31517 * 120.00085 * 184.86942 * 15 13 11 17 17 Si 1.86799 * 120.00423 * 5.14729 * 15 13 11 18 18 H 1.48504 * 109.46949 * 264.97303 * 17 15 13 19 19 H 1.48503 * 109.46920 * 24.97050 * 17 15 13 20 20 H 1.48494 * 109.47363 * 144.96934 * 17 15 13 21 21 C 1.50693 * 109.47355 * 185.00095 * 11 10 8 22 22 C 1.38238 * 120.00015 * 294.75443 * 21 11 10 23 23 C 1.38239 * 120.00004 * 179.79043 * 22 21 11 24 24 C 1.38235 * 119.99782 * 0.43930 * 23 22 21 25 25 C 1.38231 * 120.00156 * 359.80780 * 24 23 22 26 26 C 1.38233 * 120.00279 * 359.97438 * 25 24 23 27 27 C 1.38878 * 119.85620 * 0.27287 * 6 5 4 28 28 C 1.38110 * 119.92984 * 359.47510 * 27 6 5 29 29 H 1.09006 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47026 * 299.99764 * 1 2 3 31 31 H 1.09000 * 109.47563 * 59.99763 * 1 2 3 32 32 H 1.09004 * 109.47026 * 240.00236 * 2 1 3 33 33 H 1.08991 * 109.47535 * 119.99993 * 2 1 3 34 34 H 1.07998 * 119.95933 * 0.02809 * 4 3 2 35 35 H 1.08003 * 120.03515 * 179.97438 * 5 4 3 36 36 H 0.96997 * 120.00113 * 214.72106 * 7 6 5 37 37 H 1.09000 * 109.47474 * 60.00057 * 10 8 7 38 38 H 1.09003 * 109.47338 * 299.99370 * 10 8 7 39 39 H 0.97001 * 120.00198 * 180.28042 * 16 15 13 40 40 H 1.07998 * 119.99765 * 359.97438 * 22 21 11 41 41 H 1.07998 * 120.00148 * 180.27301 * 23 22 21 42 42 H 1.08006 * 119.99886 * 179.84106 * 24 23 22 43 43 H 1.08007 * 119.99858 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.00194 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.03417 * 179.72459 * 27 6 5 46 46 H 1.07995 * 119.96713 * 180.25215 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0714 1.1984 5 6 2.7222 3.3737 1.2017 6 6 2.9531 4.0301 -0.0001 7 7 3.4195 5.3493 -0.0001 8 6 4.2719 5.7627 0.9586 9 8 4.7115 4.9684 1.7628 10 6 4.6786 7.2119 1.0312 11 6 5.6444 7.4126 2.2009 12 1 5.1857 7.0433 3.1182 13 6 6.9189 6.6535 1.9358 14 1 7.2970 6.5684 0.9278 15 6 7.6024 6.0678 2.9801 16 7 8.7628 5.4880 2.7637 17 14 6.8767 6.0910 4.7012 18 1 7.4276 7.2456 5.4552 19 1 5.3995 6.2162 4.6139 20 1 7.2258 4.8296 5.4027 21 6 5.9550 8.8796 2.3498 22 6 6.6416 9.5455 1.3518 23 6 6.9228 10.8923 1.4865 24 6 6.5253 11.5710 2.6233 25 6 5.8432 10.9039 3.6236 26 6 5.5581 9.5582 3.4869 27 6 2.7152 3.3761 -1.2019 28 6 2.2604 2.0720 -1.1985 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0822 1.5604 2.1326 35 1 2.9012 3.8813 2.1380 36 1 3.1295 5.9662 -0.6902 37 1 3.7938 7.8306 1.1810 38 1 5.1694 7.4987 0.1012 39 1 9.2418 5.0723 3.4977 40 1 6.9558 9.0143 0.4655 41 1 7.4554 11.4136 0.7048 42 1 6.7473 12.6226 2.7297 43 1 5.5331 11.4341 4.5119 44 1 5.0255 9.0370 4.2686 45 1 2.8896 3.8853 -2.1382 46 1 2.0791 1.5615 -2.1327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000474073201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:42 Heat of formation + Delta-G solvation = -14.973897 kcal Electronic energy + Delta-G solvation = -26301.758194 eV Core-core repulsion = 22733.730547 eV Total energy + Delta-G solvation = -3568.027647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47107 -40.17364 -39.48144 -36.43923 -35.72768 -34.00210 -33.63539 -31.85477 -31.60745 -30.72781 -29.34411 -27.70933 -24.95806 -24.03768 -23.89792 -23.27836 -22.13092 -21.36791 -20.80569 -19.08030 -18.66571 -18.08469 -17.26624 -16.67575 -16.50064 -16.39380 -15.84687 -15.56270 -15.49084 -15.14059 -14.80890 -14.60698 -14.59216 -14.25105 -14.20807 -14.07468 -13.96430 -13.71760 -13.45075 -13.30135 -12.96612 -12.86409 -12.80221 -12.25237 -12.08759 -11.90671 -11.88792 -11.83433 -11.68741 -11.45781 -11.10824 -10.94632 -10.74828 -10.55293 -9.84014 -9.63533 -9.32179 -8.89834 -8.24660 -6.20853 0.34764 0.48873 0.67227 0.72376 1.26083 1.31663 1.38903 1.82782 2.21863 2.37443 2.89061 3.06487 3.21812 3.86262 3.93446 4.01855 4.10734 4.12241 4.27993 4.29906 4.32733 4.42998 4.47699 4.49187 4.56862 4.61532 4.66393 4.67971 4.81613 4.85180 4.87064 5.04953 5.08495 5.11642 5.17921 5.20069 5.36280 5.37470 5.40073 5.44138 5.46905 5.64380 5.68089 5.74339 5.76090 5.81480 6.01197 6.15732 6.31550 6.35159 6.61159 6.78751 7.40049 7.43151 8.92627 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.003179 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.011936 B = 8806.672077 C = 9600.015697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.107 4.107 4 C -0.111 4.111 5 C -0.146 4.146 6 C 0.133 3.867 7 N -0.672 5.672 8 C 0.509 3.491 9 O -0.536 6.536 10 C -0.110 4.110 11 C 0.046 3.954 12 H 0.041 0.959 13 C -0.462 4.462 14 H 0.036 0.964 15 C 0.026 3.974 16 N -0.953 5.953 17 Si 0.920 3.080 18 H -0.270 1.270 19 H -0.246 1.246 20 H -0.301 1.301 21 C -0.064 4.064 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.123 4.123 26 C -0.156 4.156 27 C -0.146 4.146 28 C -0.099 4.099 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.424 0.576 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.258 0.742 40 H 0.110 0.890 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.108 0.892 45 H 0.149 0.851 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.588 1.155 -8.182 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.108 4.108 4 C -0.130 4.130 5 C -0.167 4.167 6 C 0.038 3.962 7 N -0.320 5.320 8 C 0.298 3.702 9 O -0.411 6.411 10 C -0.150 4.150 11 C 0.027 3.973 12 H 0.060 0.940 13 C -0.500 4.500 14 H 0.054 0.946 15 C -0.170 4.170 16 N -0.594 5.594 17 Si 0.747 3.253 18 H -0.196 1.196 19 H -0.170 1.170 20 H -0.228 1.228 21 C -0.064 4.064 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.158 4.158 25 C -0.141 4.141 26 C -0.175 4.175 27 C -0.167 4.167 28 C -0.117 4.117 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.120 0.880 36 H 0.262 0.738 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.158 0.842 44 H 0.126 0.874 45 H 0.167 0.833 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.112 0.574 -7.483 18.686 hybrid contribution 0.460 -0.160 0.889 1.013 sum -16.652 0.414 -6.594 17.915 Atomic orbital electron populations 1.21727 0.93866 1.02397 1.01959 1.20548 0.96788 0.91003 1.03448 1.20165 1.00369 0.97642 0.92612 1.21051 0.99303 0.93724 0.98914 1.21107 1.01393 0.96826 0.97342 1.18014 0.97761 0.85905 0.94479 1.43583 1.46384 1.10769 1.31302 1.21313 0.76837 0.91974 0.80099 1.90738 1.52489 1.56425 1.41407 1.21607 1.00773 0.90757 1.01836 1.18211 0.94041 0.89316 0.95768 0.94048 1.20821 1.05773 1.29938 0.93483 0.94581 1.25563 0.94558 0.94821 1.02082 1.70029 1.15799 1.40565 1.33057 0.86109 0.80632 0.76875 0.81653 1.19603 1.17020 1.22791 1.20486 0.95959 0.95662 0.94317 1.21025 0.98518 0.94707 0.99370 1.21410 0.99915 0.93998 0.98904 1.21346 0.99625 1.00887 0.93926 1.21338 0.99121 0.93817 0.99836 1.21217 1.02720 0.95686 0.97831 1.21185 1.03328 0.95750 0.96396 1.21164 0.98358 0.93660 0.98539 0.91046 0.93420 0.92242 0.89705 0.91226 0.85487 0.87991 0.73752 0.87242 0.88111 0.93306 0.87152 0.84271 0.83562 0.84187 0.87360 0.83312 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.08 -1.38 6.06 29.85 0.18 -1.20 16 3 C -0.11 -2.52 5.14 -19.84 -0.10 -2.62 16 4 C -0.11 -3.22 9.69 22.25 0.22 -3.01 16 5 C -0.15 -5.07 8.65 22.39 0.19 -4.88 16 6 C 0.13 4.15 6.25 38.16 0.24 4.39 16 7 N -0.67 -20.21 5.34 -303.50 -1.62 -21.83 16 8 C 0.51 20.09 7.30 87.65 0.64 20.73 16 9 O -0.54 -27.16 12.78 -3.05 -0.04 -27.20 16 10 C -0.11 -3.95 4.97 29.85 0.15 -3.80 16 11 C 0.05 2.09 1.29 -12.29 -0.02 2.07 16 12 H 0.04 2.04 4.34 -2.38 -0.01 2.03 16 13 C -0.46 -26.26 6.84 25.60 0.18 -26.08 16 14 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 15 C 0.03 1.60 5.47 84.65 0.46 2.06 16 16 N -0.95 -62.81 13.96 21.45 0.30 -62.51 16 17 Si 0.92 48.85 27.67 68.60 1.90 50.74 16 18 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.25 -12.41 5.88 99.48 0.58 -11.82 16 20 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 21 C -0.06 -2.59 4.77 -19.87 -0.09 -2.68 16 22 C -0.12 -4.41 8.88 22.27 0.20 -4.21 16 23 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 24 C -0.14 -3.88 10.05 22.27 0.22 -3.66 16 25 C -0.12 -3.72 10.05 22.27 0.22 -3.49 16 26 C -0.16 -5.76 9.67 22.27 0.22 -5.54 16 27 C -0.15 -3.57 9.97 22.39 0.22 -3.35 16 28 C -0.10 -2.15 9.69 22.25 0.22 -1.93 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.20 8.09 -2.38 -0.02 1.18 16 33 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 34 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.10 4.10 6.53 -2.91 -0.02 4.08 16 36 H 0.42 8.88 8.82 -92.71 -0.82 8.06 16 37 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.10 3.32 7.90 -2.39 -0.02 3.30 16 39 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 40 H 0.11 4.22 7.82 -2.91 -0.02 4.20 16 41 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 43 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 44 H 0.11 3.91 7.95 -2.91 -0.02 3.88 16 45 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 46 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -79.25 381.32 4.85 -74.40 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.04 Total: 28.49 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 4.28 Total: -42.08 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -1.32 Total: -84.35 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.04 Total: -27.20 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.90 Total: 50.74 kcal Total: -79.25 4.85 -74.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000474073201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.426 kcal (2) G-P(sol) polarization free energy of solvation -79.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds