Wall clock time and date at job start Tue Mar 31 2020 13:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 120.00078 * 2 1 4 4 C 1.38237 * 120.00016 * 180.27801 * 3 2 1 5 5 C 1.38242 * 119.99702 * 359.73826 * 4 3 2 6 6 C 1.38231 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00078 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99767 * 359.97438 * 6 5 4 9 9 C 1.50703 * 119.99763 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.46688 * 173.09306 * 9 8 6 11 11 C 1.52998 * 109.47358 * 293.09183 * 9 8 6 12 12 N 1.46501 * 109.47107 * 53.10024 * 9 8 6 13 13 C 1.34773 * 120.00447 * 169.96483 * 12 9 8 14 14 O 1.21592 * 119.99547 * 359.97438 * 13 12 9 15 15 C 1.47637 * 120.00401 * 179.97438 * 13 12 9 16 16 C 1.40014 * 119.89631 * 179.97438 * 15 13 12 17 17 C 1.36319 * 120.10361 * 180.25316 * 16 15 13 18 18 C 1.40888 * 119.89135 * 359.53283 * 17 16 15 19 19 C 1.41109 * 120.10122 * 180.22658 * 18 17 16 20 20 H 1.08000 * 120.00404 * 208.93197 * 19 18 17 21 21 C 1.40233 * 119.99948 * 28.93011 * 19 18 17 22 22 N 1.30643 * 120.00333 * 12.14028 * 21 19 18 23 23 Si 1.86804 * 119.99912 * 192.13596 * 21 19 18 24 24 H 1.48504 * 109.46743 * 60.00359 * 23 21 19 25 25 H 1.48496 * 109.47282 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47273 * 300.00368 * 23 21 19 27 27 C 1.40881 * 119.79730 * 0.48792 * 18 17 16 28 28 C 1.36322 * 119.89014 * 359.73730 * 27 18 17 29 29 H 1.09006 * 109.47108 * 264.68408 * 1 2 3 30 30 H 1.09001 * 109.47330 * 24.68458 * 1 2 3 31 31 H 1.09001 * 109.47528 * 144.68678 * 1 2 3 32 32 H 1.08000 * 119.99965 * 359.97438 * 3 2 1 33 33 H 1.07994 * 120.00146 * 179.72296 * 4 3 2 34 34 H 1.08001 * 119.99744 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46900 * 276.45760 * 7 6 5 36 36 H 1.08993 * 109.46846 * 36.46106 * 7 6 5 37 37 H 1.09005 * 109.46803 * 156.46242 * 7 6 5 38 38 H 1.09002 * 109.46668 * 60.00209 * 11 9 8 39 39 H 1.08995 * 109.47040 * 179.97438 * 11 9 8 40 40 H 1.08996 * 109.47069 * 300.00168 * 11 9 8 41 41 H 0.96999 * 119.99784 * 349.95720 * 12 9 8 42 42 H 1.07999 * 119.94477 * 359.97438 * 16 15 13 43 43 H 1.07999 * 120.04839 * 179.72329 * 17 16 15 44 44 H 0.96990 * 120.00537 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.05774 * 179.71382 * 27 18 17 46 46 H 1.08001 * 119.94694 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0058 5 6 4.2717 -0.0001 -0.0061 6 6 3.5805 -1.1973 -0.0012 7 6 4.3340 -2.5024 -0.0022 8 6 2.1982 -1.1972 0.0046 9 6 1.4447 -2.5023 0.0094 10 1 0.3800 -2.3066 0.1372 11 6 1.6740 -3.2285 -1.3176 12 7 1.9234 -3.3385 1.1130 13 6 1.2610 -4.4654 1.4411 14 8 0.2658 -4.7879 0.8213 15 6 1.7437 -5.3084 2.5528 16 6 1.0535 -6.4784 2.8921 17 6 1.4925 -7.2572 3.9212 18 6 2.6483 -6.8882 4.6374 19 6 3.1094 -7.6936 5.7004 20 1 3.6521 -7.2469 6.5204 21 6 2.8630 -9.0741 5.6921 22 7 2.4233 -9.6527 4.6065 23 14 3.1635 -10.0857 7.2335 24 1 2.3084 -9.5753 8.3351 25 1 2.8284 -11.5074 6.9656 26 1 4.5918 -9.9786 7.6252 27 6 3.3392 -5.7098 4.2927 28 6 2.8899 -4.9349 3.2650 29 1 -0.3634 -0.0952 1.0233 30 1 -0.3634 0.9338 -0.4292 31 1 -0.3634 -0.8386 -0.5940 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1323 -0.0103 34 1 5.3517 -0.0002 -0.0111 35 1 4.6114 -2.7609 -1.0240 36 1 5.2339 -2.4027 0.6046 37 1 3.7014 -3.2874 0.4122 38 1 2.7387 -3.4242 -1.4453 39 1 1.1294 -4.1726 -1.3139 40 1 1.3178 -2.6063 -2.1386 41 1 2.7171 -3.0811 1.6075 42 1 0.1694 -6.7619 2.3405 43 1 0.9569 -8.1571 4.1850 44 1 2.2524 -10.6074 4.6008 45 1 4.2229 -5.4206 4.8418 46 1 3.4186 -4.0312 3.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546867250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:52 Heat of formation + Delta-G solvation = -0.026442 kcal Electronic energy + Delta-G solvation = -26570.286096 eV Core-core repulsion = 23002.906619 eV Total energy + Delta-G solvation = -3567.379477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47897 -38.85852 -37.17573 -35.31042 -33.87500 -33.71222 -31.84893 -30.30665 -29.75099 -29.05554 -27.48404 -26.80220 -25.89615 -23.60861 -21.92446 -21.09112 -20.80115 -20.31298 -19.61081 -17.52759 -17.22338 -16.31554 -16.00070 -15.37744 -15.00626 -14.59709 -14.25453 -14.13495 -14.01268 -13.93656 -13.50048 -13.19910 -13.05045 -12.98026 -12.85288 -12.65925 -12.53824 -12.22439 -12.00268 -11.90508 -11.80734 -11.61657 -11.44486 -11.35606 -11.22489 -11.07378 -10.97776 -10.63264 -10.43848 -10.04186 -9.50918 -9.38878 -9.01515 -8.72477 -8.65121 -8.50993 -7.70460 -7.51703 -6.96061 -4.60643 1.20584 1.26166 2.22698 2.93645 2.96357 2.98955 3.02628 3.51045 3.76319 3.87266 3.92113 4.56376 4.59539 4.70028 4.78001 4.85744 5.16467 5.18814 5.34107 5.41719 5.50862 5.52960 5.57367 5.58670 5.61580 5.74333 5.76072 5.88101 5.96145 5.97988 6.02121 6.10886 6.23460 6.28344 6.36075 6.41214 6.45265 6.60534 6.82477 6.84344 6.90772 6.98137 7.05693 7.10696 7.44724 7.60133 7.78130 7.87752 8.06581 8.23039 8.44311 8.64357 8.75504 9.05854 9.96107 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.002696 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.915797 B =10383.639407 C =10918.655974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.113 4.113 5 C -0.128 4.128 6 C -0.066 4.066 7 C -0.148 4.148 8 C -0.094 4.094 9 C 0.186 3.814 10 H 0.087 0.913 11 C -0.166 4.166 12 N -0.736 5.736 13 C 0.571 3.429 14 O -0.569 6.569 15 C -0.279 4.279 16 C -0.037 4.037 17 C -0.176 4.176 18 C 0.130 3.870 19 C -0.447 4.447 20 H 0.083 0.917 21 C 0.073 3.927 22 N -0.778 5.778 23 Si 0.915 3.085 24 H -0.261 1.261 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.231 4.231 28 C -0.053 4.053 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.399 0.601 42 H 0.101 0.899 43 H 0.121 0.879 44 H 0.287 0.713 45 H 0.097 0.903 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 15.078 -7.400 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.068 4.068 3 C -0.147 4.147 4 C -0.131 4.131 5 C -0.146 4.146 6 C -0.066 4.066 7 C -0.205 4.205 8 C -0.094 4.094 9 C 0.082 3.918 10 H 0.105 0.895 11 C -0.224 4.224 12 N -0.392 5.392 13 C 0.365 3.635 14 O -0.450 6.450 15 C -0.283 4.283 16 C -0.057 4.057 17 C -0.195 4.195 18 C 0.127 3.873 19 C -0.475 4.475 20 H 0.101 0.899 21 C -0.148 4.148 22 N -0.401 5.401 23 Si 0.739 3.261 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.188 1.188 27 C -0.250 4.250 28 C -0.072 4.072 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.238 0.762 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.451 14.600 -7.941 16.683 hybrid contribution 0.738 -0.227 0.800 1.111 sum 2.189 14.373 -7.141 16.198 Atomic orbital electron populations 1.20894 0.91176 1.02808 1.02888 1.19754 0.96067 0.92367 0.98644 1.20968 0.94253 0.97212 1.02240 1.21100 0.94278 0.97873 0.99869 1.21002 0.99736 0.91912 1.01925 1.19788 0.92955 0.95630 0.98234 1.21455 1.00774 0.95281 1.02957 1.19725 0.93177 0.94252 1.02276 1.19676 0.98087 0.86384 0.87670 0.89496 1.22277 1.02739 1.01663 0.95757 1.46445 1.31915 1.25460 1.35406 1.18626 0.82120 0.79685 0.83024 1.90630 1.26862 1.72575 1.54962 1.18942 1.03810 1.01363 1.04188 1.20496 0.97240 0.92413 0.95506 1.21041 0.98003 1.01335 0.99170 1.17786 0.89015 0.90117 0.90401 1.19779 1.30236 0.91915 1.05588 0.89894 1.26072 0.92604 0.98832 0.97292 1.69708 1.30514 1.12767 1.27146 0.86239 0.80090 0.78260 0.81497 1.18570 1.20072 1.18755 1.20711 1.02186 1.00225 1.01903 1.20365 0.94526 0.96830 0.95443 0.90802 0.91529 0.90885 0.86158 0.86208 0.86098 0.90895 0.91337 0.88741 0.91974 0.90705 0.92374 0.76182 0.88109 0.86105 0.90211 0.88463 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.13 36.01 0.33 -0.88 16 2 C -0.07 -0.78 5.88 -104.62 -0.62 -1.40 16 3 C -0.13 -1.31 9.68 -39.58 -0.38 -1.69 16 4 C -0.11 -1.11 10.05 -39.58 -0.40 -1.50 16 5 C -0.13 -1.35 9.73 -39.58 -0.39 -1.73 16 6 C -0.07 -0.79 5.58 -104.62 -0.58 -1.37 16 7 C -0.15 -1.69 7.85 36.01 0.28 -1.41 16 8 C -0.09 -1.20 4.89 -104.62 -0.51 -1.71 16 9 C 0.19 2.71 2.25 -69.08 -0.16 2.55 16 10 H 0.09 1.33 5.65 -51.93 -0.29 1.04 16 11 C -0.17 -2.33 8.98 37.16 0.33 -2.00 16 12 N -0.74 -12.22 3.68 -55.94 -0.21 -12.43 16 13 C 0.57 11.90 7.52 -12.43 -0.09 11.80 16 14 O -0.57 -13.21 15.10 5.28 0.08 -13.13 16 15 C -0.28 -6.29 5.89 -104.73 -0.62 -6.91 16 16 C -0.04 -0.90 9.52 -39.61 -0.38 -1.28 16 17 C -0.18 -4.48 8.59 -39.27 -0.34 -4.82 16 18 C 0.13 3.29 5.54 -106.81 -0.59 2.70 16 19 C -0.45 -11.11 9.05 -37.74 -0.34 -11.46 16 20 H 0.08 1.95 7.88 -52.49 -0.41 1.53 16 21 C 0.07 1.71 5.22 -17.31 -0.09 1.62 16 22 N -0.78 -19.12 10.91 55.56 0.61 -18.51 16 23 Si 0.92 17.52 29.58 -169.99 -5.03 12.49 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 27 C -0.23 -5.30 9.73 -39.27 -0.38 -5.68 16 28 C -0.05 -1.11 9.47 -39.61 -0.38 -1.49 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.07 0.77 7.55 -51.93 -0.39 0.38 16 36 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 37 H 0.09 1.25 3.79 -51.93 -0.20 1.06 16 38 H 0.06 0.82 5.53 -51.93 -0.29 0.53 16 39 H 0.07 1.23 6.93 -51.93 -0.36 0.87 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.40 6.12 4.30 -40.82 -0.18 5.95 16 42 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 43 H 0.12 3.15 6.27 -52.49 -0.33 2.82 16 44 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 45 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 46 H 0.09 1.54 6.37 -52.49 -0.33 1.21 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -28.12 366.61 -10.35 -38.47 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -6.03 Total: 14.24 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -5.29 Total: -26.66 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.40 Total: -30.94 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.12 -10.35 -38.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546867250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.444 kcal (2) G-P(sol) polarization free energy of solvation -28.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds