Wall clock time and date at job start Tue Mar 31 2020 13:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38232 * 120.00078 * 2 1 4 4 C 1.38237 * 120.00016 * 180.27801 * 3 2 1 5 5 C 1.38242 * 119.99702 * 359.73826 * 4 3 2 6 6 C 1.38231 * 120.00248 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00078 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99767 * 359.97438 * 6 5 4 9 9 C 1.50703 * 119.99763 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.46688 * 173.09306 * 9 8 6 11 11 C 1.52998 * 109.47358 * 293.09183 * 9 8 6 12 12 N 1.46501 * 109.47107 * 53.10024 * 9 8 6 13 13 C 1.34773 * 120.00447 * 169.96483 * 12 9 8 14 14 O 1.21592 * 119.99547 * 359.97438 * 13 12 9 15 15 C 1.47637 * 120.00401 * 179.97438 * 13 12 9 16 16 C 1.40014 * 119.89631 * 179.97438 * 15 13 12 17 17 C 1.36319 * 120.10361 * 180.25316 * 16 15 13 18 18 C 1.40888 * 119.89135 * 359.53283 * 17 16 15 19 19 C 1.41109 * 120.10122 * 180.22658 * 18 17 16 20 20 H 1.08000 * 120.00404 * 208.93197 * 19 18 17 21 21 C 1.40233 * 119.99948 * 28.93011 * 19 18 17 22 22 N 1.30643 * 120.00333 * 12.14028 * 21 19 18 23 23 Si 1.86804 * 119.99912 * 192.13596 * 21 19 18 24 24 H 1.48504 * 109.46743 * 60.00359 * 23 21 19 25 25 H 1.48496 * 109.47282 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47273 * 300.00368 * 23 21 19 27 27 C 1.40881 * 119.79730 * 0.48792 * 18 17 16 28 28 C 1.36322 * 119.89014 * 359.73730 * 27 18 17 29 29 H 1.09006 * 109.47108 * 264.68408 * 1 2 3 30 30 H 1.09001 * 109.47330 * 24.68458 * 1 2 3 31 31 H 1.09001 * 109.47528 * 144.68678 * 1 2 3 32 32 H 1.08000 * 119.99965 * 359.97438 * 3 2 1 33 33 H 1.07994 * 120.00146 * 179.72296 * 4 3 2 34 34 H 1.08001 * 119.99744 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.46900 * 276.45760 * 7 6 5 36 36 H 1.08993 * 109.46846 * 36.46106 * 7 6 5 37 37 H 1.09005 * 109.46803 * 156.46242 * 7 6 5 38 38 H 1.09002 * 109.46668 * 60.00209 * 11 9 8 39 39 H 1.08995 * 109.47040 * 179.97438 * 11 9 8 40 40 H 1.08996 * 109.47069 * 300.00168 * 11 9 8 41 41 H 0.96999 * 119.99784 * 349.95720 * 12 9 8 42 42 H 1.07999 * 119.94477 * 359.97438 * 16 15 13 43 43 H 1.07999 * 120.04839 * 179.72329 * 17 16 15 44 44 H 0.96990 * 120.00537 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.05774 * 179.71382 * 27 18 17 46 46 H 1.08001 * 119.94694 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0058 5 6 4.2717 -0.0001 -0.0061 6 6 3.5805 -1.1973 -0.0012 7 6 4.3340 -2.5024 -0.0022 8 6 2.1982 -1.1972 0.0046 9 6 1.4447 -2.5023 0.0094 10 1 0.3800 -2.3066 0.1372 11 6 1.6740 -3.2285 -1.3176 12 7 1.9234 -3.3385 1.1130 13 6 1.2610 -4.4654 1.4411 14 8 0.2658 -4.7879 0.8213 15 6 1.7437 -5.3084 2.5528 16 6 1.0535 -6.4784 2.8921 17 6 1.4925 -7.2572 3.9212 18 6 2.6483 -6.8882 4.6374 19 6 3.1094 -7.6936 5.7004 20 1 3.6521 -7.2469 6.5204 21 6 2.8630 -9.0741 5.6921 22 7 2.4233 -9.6527 4.6065 23 14 3.1635 -10.0857 7.2335 24 1 2.3084 -9.5753 8.3351 25 1 2.8284 -11.5074 6.9656 26 1 4.5918 -9.9786 7.6252 27 6 3.3392 -5.7098 4.2927 28 6 2.8899 -4.9349 3.2650 29 1 -0.3634 -0.0952 1.0233 30 1 -0.3634 0.9338 -0.4292 31 1 -0.3634 -0.8386 -0.5940 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1323 -0.0103 34 1 5.3517 -0.0002 -0.0111 35 1 4.6114 -2.7609 -1.0240 36 1 5.2339 -2.4027 0.6046 37 1 3.7014 -3.2874 0.4122 38 1 2.7387 -3.4242 -1.4453 39 1 1.1294 -4.1726 -1.3139 40 1 1.3178 -2.6063 -2.1386 41 1 2.7171 -3.0811 1.6075 42 1 0.1694 -6.7619 2.3405 43 1 0.9569 -8.1571 4.1850 44 1 2.2524 -10.6074 4.6008 45 1 4.2229 -5.4206 4.8418 46 1 3.4186 -4.0312 3.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546867250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:51 Heat of formation + Delta-G solvation = -12.008395 kcal Electronic energy + Delta-G solvation = -26570.805673 eV Core-core repulsion = 23002.906619 eV Total energy + Delta-G solvation = -3567.899054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59720 -40.28804 -38.90369 -36.60665 -35.66050 -34.55611 -33.14882 -31.89671 -31.38693 -30.47606 -28.38220 -27.67901 -27.58352 -24.86064 -23.50271 -22.76368 -21.64721 -21.51374 -21.18074 -19.34490 -18.71105 -17.54073 -17.18626 -16.81532 -16.23143 -15.79604 -15.72244 -15.68769 -15.19039 -15.13633 -14.93038 -14.47752 -14.35001 -14.03504 -13.96066 -13.81386 -13.72637 -13.65992 -13.59018 -13.24527 -13.04837 -12.82527 -12.73931 -12.61420 -12.53905 -12.37027 -12.30379 -11.89541 -11.77015 -11.48565 -11.34381 -11.15142 -10.66683 -10.03590 -9.57445 -9.56793 -9.44596 -9.36131 -8.73795 -6.49333 0.35411 0.43238 0.45822 1.13698 1.38813 1.44647 1.52099 2.12458 2.19071 2.35053 2.80472 2.86342 3.57184 3.68221 3.87802 3.95093 4.12801 4.15815 4.19316 4.29114 4.38491 4.40859 4.45409 4.51383 4.64133 4.70053 4.73653 4.76269 4.82665 4.93101 4.96970 4.98833 5.01316 5.03297 5.15733 5.20168 5.25294 5.28981 5.37460 5.51727 5.59350 5.61390 5.63393 5.76971 5.78640 5.95784 6.01380 6.12233 6.20929 6.56721 6.69024 6.77994 6.89066 7.43204 8.21100 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.002696 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.915797 B =10383.639407 C =10918.655974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.131 4.131 4 C -0.110 4.110 5 C -0.132 4.132 6 C -0.076 4.076 7 C -0.146 4.146 8 C -0.112 4.112 9 C 0.187 3.813 10 H 0.076 0.924 11 C -0.161 4.161 12 N -0.716 5.716 13 C 0.571 3.429 14 O -0.599 6.599 15 C -0.287 4.287 16 C -0.050 4.050 17 C -0.196 4.196 18 C 0.103 3.897 19 C -0.476 4.476 20 H 0.091 0.909 21 C 0.032 3.968 22 N -0.812 5.812 23 Si 0.990 3.010 24 H -0.258 1.258 25 H -0.269 1.269 26 H -0.254 1.254 27 C -0.240 4.240 28 C -0.041 4.041 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.407 0.593 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.293 0.707 45 H 0.116 0.884 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 17.548 -7.205 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.080 4.080 3 C -0.149 4.149 4 C -0.128 4.128 5 C -0.150 4.150 6 C -0.076 4.076 7 C -0.202 4.202 8 C -0.113 4.113 9 C 0.084 3.916 10 H 0.094 0.906 11 C -0.219 4.219 12 N -0.371 5.371 13 C 0.365 3.635 14 O -0.483 6.483 15 C -0.291 4.291 16 C -0.070 4.070 17 C -0.215 4.215 18 C 0.100 3.900 19 C -0.504 4.504 20 H 0.109 0.891 21 C -0.186 4.186 22 N -0.436 5.436 23 Si 0.810 3.190 24 H -0.182 1.182 25 H -0.194 1.194 26 H -0.178 1.178 27 C -0.259 4.259 28 C -0.060 4.060 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.248 0.752 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.135 0.865 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.346 17.112 -7.762 19.086 hybrid contribution 0.158 -0.849 0.623 1.065 sum 3.504 16.264 -7.139 18.104 Atomic orbital electron populations 1.20907 0.90646 1.03628 1.02572 1.19969 0.96713 0.92565 0.98708 1.21283 0.94764 0.97520 1.01344 1.21485 0.94306 0.98812 0.98164 1.21274 1.00857 0.91559 1.01326 1.19892 0.92633 0.96404 0.98699 1.21403 1.00860 0.94462 1.03524 1.19586 0.93611 0.93403 1.04653 1.19737 0.97875 0.87214 0.86819 0.90591 1.22210 1.02855 1.00488 0.96311 1.46305 1.31265 1.24081 1.35493 1.18420 0.81988 0.80630 0.82501 1.90614 1.28237 1.73575 1.55825 1.19218 1.04092 1.00986 1.04817 1.20556 0.97464 0.93436 0.95507 1.20961 0.98819 1.01368 1.00363 1.18138 0.89307 0.91516 0.91040 1.20101 1.31347 0.92922 1.06038 0.89078 1.26987 0.91731 0.99559 1.00286 1.69777 1.31169 1.13484 1.29211 0.85125 0.80254 0.76584 0.77083 1.18237 1.19354 1.17790 1.20973 1.02691 0.99730 1.02536 1.20656 0.93662 0.97621 0.94051 0.91352 0.89328 0.91806 0.83871 0.83454 0.84139 0.90266 0.89847 0.90911 0.91161 0.93648 0.90507 0.75218 0.88912 0.87817 0.89552 0.86549 0.85474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 9.13 71.24 0.65 -1.61 16 2 C -0.08 -1.67 5.88 -19.87 -0.12 -1.78 16 3 C -0.13 -2.24 9.68 22.27 0.22 -2.02 16 4 C -0.11 -1.72 10.05 22.27 0.22 -1.50 16 5 C -0.13 -2.34 9.73 22.27 0.22 -2.12 16 6 C -0.08 -1.63 5.58 -19.87 -0.11 -1.74 16 7 C -0.15 -3.02 7.85 71.24 0.56 -2.46 16 8 C -0.11 -2.68 4.89 -19.86 -0.10 -2.78 16 9 C 0.19 5.38 2.25 44.25 0.10 5.48 16 10 H 0.08 2.36 5.65 -2.38 -0.01 2.35 16 11 C -0.16 -4.49 8.98 71.98 0.65 -3.84 16 12 N -0.72 -23.48 3.68 -449.16 -1.65 -25.13 16 13 C 0.57 24.17 7.52 86.73 0.65 24.82 16 14 O -0.60 -28.76 15.10 -4.01 -0.06 -28.82 16 15 C -0.29 -13.15 5.89 -19.93 -0.12 -13.27 16 16 C -0.05 -2.56 9.52 22.25 0.21 -2.34 16 17 C -0.20 -10.45 8.59 22.47 0.19 -10.25 16 18 C 0.10 5.36 5.54 -21.28 -0.12 5.24 16 19 C -0.48 -24.05 9.05 23.46 0.21 -23.84 16 20 H 0.09 4.29 7.88 -2.91 -0.02 4.26 16 21 C 0.03 1.52 5.22 85.35 0.45 1.96 16 22 N -0.81 -41.11 10.91 21.87 0.24 -40.87 16 23 Si 0.99 35.77 29.58 68.60 2.03 37.80 16 24 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 25 H -0.27 -9.32 7.11 99.48 0.71 -8.62 16 26 H -0.25 -8.75 7.11 99.48 0.71 -8.05 16 27 C -0.24 -10.96 9.73 22.47 0.22 -10.74 16 28 C -0.04 -1.71 9.47 22.25 0.21 -1.50 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.09 1.22 8.05 -2.39 -0.02 1.20 16 31 H 0.06 1.29 6.56 -2.39 -0.02 1.27 16 32 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.08 1.52 7.55 -2.39 -0.02 1.50 16 36 H 0.08 1.45 8.13 -2.39 -0.02 1.43 16 37 H 0.07 1.82 3.79 -2.38 -0.01 1.81 16 38 H 0.07 1.81 5.53 -2.39 -0.01 1.80 16 39 H 0.04 1.53 6.93 -2.39 -0.02 1.51 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.41 11.92 4.30 -92.71 -0.40 11.53 16 42 H 0.09 4.74 7.63 -2.91 -0.02 4.72 16 43 H 0.10 5.77 6.27 -2.91 -0.02 5.75 16 44 H 0.29 13.42 8.29 -92.72 -0.77 12.66 16 45 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 46 H 0.13 4.17 6.37 -2.91 -0.02 4.15 16 Total: -1.00 -62.97 366.61 5.37 -57.60 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: 0.61 Total: 43.74 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 4.20 Total: -44.32 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -1.41 Total: -66.00 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.06 Total: -28.82 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -62.97 5.37 -57.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546867250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.595 kcal (2) G-P(sol) polarization free energy of solvation -62.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds