Wall clock time and date at job start Tue Mar 31 2020 13:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38238 * 119.99713 * 2 1 4 4 C 1.38232 * 120.00014 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99961 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99830 * 359.97438 * 4 3 2 7 7 C 1.50699 * 120.00015 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47351 * 89.99498 * 7 6 4 9 9 O 1.21288 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00206 * 179.97438 * 8 7 6 11 11 C 1.39124 * 120.00238 * 184.92058 * 10 8 7 12 12 C 1.38648 * 120.28450 * 331.07282 * 11 10 8 13 13 C 1.38222 * 120.03444 * 180.25500 * 12 11 10 14 14 C 1.38868 * 120.61523 * 359.74296 * 13 12 11 15 15 C 1.36463 * 120.57707 * 359.97438 * 14 13 12 16 16 C 1.40735 * 119.94377 * 0.02562 * 15 14 13 17 17 C 1.41070 * 120.30234 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00144 * 205.07764 * 17 16 15 19 19 C 1.39957 * 119.99928 * 25.07528 * 17 16 15 20 20 N 1.30859 * 120.00087 * 17.59364 * 19 17 16 21 21 Si 1.86806 * 120.00080 * 197.59044 * 19 17 16 22 22 H 1.48498 * 109.47009 * 265.01870 * 21 19 17 23 23 H 1.48498 * 109.46850 * 25.02199 * 21 19 17 24 24 H 1.48501 * 109.46939 * 145.01872 * 21 19 17 25 25 C 1.38233 * 120.00044 * 0.27082 * 6 4 3 26 26 C 1.50707 * 119.99955 * 179.72923 * 25 6 4 27 27 C 1.38230 * 120.00276 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46653 * 90.00100 * 1 2 3 29 29 H 1.08997 * 109.46454 * 209.99734 * 1 2 3 30 30 H 1.08995 * 109.47174 * 330.00157 * 1 2 3 31 31 H 1.08006 * 120.00189 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47210 * 269.97710 * 5 4 3 33 33 H 1.08998 * 109.47255 * 29.97960 * 5 4 3 34 34 H 1.09005 * 109.47155 * 149.97745 * 5 4 3 35 35 H 1.09001 * 109.47037 * 329.99946 * 7 6 4 36 36 H 1.09000 * 109.47396 * 209.99713 * 7 6 4 37 37 H 0.97006 * 119.99904 * 4.91693 * 10 8 7 38 38 H 1.08001 * 119.98390 * 359.97074 * 12 11 10 39 39 H 1.08001 * 119.69310 * 179.76062 * 13 12 11 40 40 H 1.07999 * 119.70812 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.02847 * 180.02562 * 15 14 13 42 42 H 0.97002 * 119.99956 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.47021 * 90.00899 * 26 25 6 44 44 H 1.09002 * 109.46939 * 210.00233 * 26 25 6 45 45 H 1.08996 * 109.47093 * 330.00326 * 26 25 6 46 46 H 1.07998 * 119.99778 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 6 4.2717 0.0002 0.0016 7 6 5.7787 0.0002 0.0028 8 6 6.2800 0.0010 1.4240 9 8 5.4911 0.0010 2.3452 10 7 7.6049 0.0006 1.6713 11 6 8.0684 -0.1020 2.9790 12 6 7.3046 0.3791 4.0313 13 6 7.7726 0.2792 5.3281 14 6 9.0040 -0.3057 5.5925 15 6 9.7737 -0.7927 4.5763 16 6 9.3205 -0.7034 3.2469 17 6 10.1103 -1.2039 2.1906 18 1 9.9952 -0.8041 1.1940 19 6 11.0431 -2.2185 2.4342 20 7 10.9573 -2.9384 3.5236 21 14 12.4104 -2.5452 1.2040 22 1 11.9970 -3.6333 0.2819 23 1 12.6798 -1.3107 0.4240 24 1 13.6414 -2.9514 1.9286 25 6 3.5806 -1.1970 -0.0035 26 6 4.3342 -2.5021 -0.0085 27 6 2.1983 -1.1971 0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1326 -0.0004 32 1 4.5163 2.8162 -1.0278 33 1 3.7445 3.2624 0.5127 34 1 5.2860 2.3726 0.5146 35 1 6.1424 0.8900 -0.5112 36 1 6.1425 -0.8900 -0.5103 37 1 8.2353 0.0719 0.9374 38 1 6.3456 0.8363 3.8374 39 1 7.1748 0.6593 6.1433 40 1 9.3552 -0.3764 6.6114 41 1 10.7299 -1.2462 4.7921 42 1 11.6041 -3.6413 3.6926 43 1 4.5153 -2.8210 1.0179 44 1 3.7453 -3.2597 -0.5257 45 1 5.2868 -2.3696 -0.5214 46 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580005657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:13 Heat of formation + Delta-G solvation = -7.498362 kcal Electronic energy + Delta-G solvation = -26787.107679 eV Core-core repulsion = 23219.404195 eV Total energy + Delta-G solvation = -3567.703484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.23599 -39.04886 -37.11164 -34.23927 -33.68611 -33.65974 -33.49426 -30.13732 -29.60077 -28.12798 -27.86208 -26.63678 -25.48570 -24.81140 -21.76265 -20.87996 -20.68569 -19.92342 -19.20889 -17.37938 -16.75621 -16.32463 -16.21021 -15.49166 -15.06587 -14.43658 -14.28843 -14.22309 -14.08369 -13.46133 -13.14296 -13.13557 -13.05015 -12.88870 -12.73741 -12.65324 -12.57141 -12.51691 -12.24311 -11.87170 -11.72493 -11.49766 -11.28266 -11.12899 -11.11221 -10.99359 -10.76887 -10.71781 -10.54194 -10.04307 -9.70759 -9.26223 -9.22734 -8.73626 -8.40056 -8.23127 -7.39724 -6.94639 -6.75658 -4.36203 1.44573 1.52403 2.64962 2.87083 3.02018 3.04987 3.21062 3.47148 3.70616 3.85955 4.16203 4.61625 4.74416 4.80431 4.89658 5.03015 5.16349 5.33281 5.40769 5.43533 5.48150 5.50745 5.55774 5.62206 5.65105 5.71354 5.76770 5.81690 5.87770 5.95532 6.04946 6.30327 6.36908 6.37975 6.55705 6.62368 6.64079 6.66206 6.82426 6.91617 7.08727 7.16033 7.19310 7.31686 7.63516 7.74093 8.00018 8.10131 8.13478 8.44210 8.56418 8.81127 8.85493 9.08150 10.13017 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.003362 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.671111 B = 8326.875514 C = 9071.310897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.128 4.128 4 C -0.064 4.064 5 C -0.116 4.116 6 C -0.062 4.062 7 C -0.109 4.109 8 C 0.501 3.499 9 O -0.528 6.528 10 N -0.639 5.639 11 C 0.015 3.985 12 C -0.094 4.094 13 C -0.229 4.229 14 C -0.112 4.112 15 C -0.156 4.156 16 C 0.103 3.897 17 C -0.466 4.466 18 H 0.074 0.926 19 C 0.079 3.921 20 N -0.790 5.790 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.260 1.260 24 H -0.275 1.275 25 C -0.061 4.061 26 C -0.120 4.120 27 C -0.128 4.128 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.401 0.599 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.119 0.881 42 H 0.281 0.719 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 4.200 -10.263 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.064 4.064 5 C -0.173 4.173 6 C -0.063 4.063 7 C -0.148 4.148 8 C 0.287 3.713 9 O -0.406 6.406 10 N -0.281 5.281 11 C -0.078 4.078 12 C -0.114 4.114 13 C -0.249 4.249 14 C -0.131 4.131 15 C -0.176 4.176 16 C 0.099 3.901 17 C -0.496 4.496 18 H 0.092 0.908 19 C -0.140 4.140 20 N -0.415 5.415 21 Si 0.729 3.271 22 H -0.196 1.196 23 H -0.184 1.184 24 H -0.200 1.200 25 C -0.061 4.061 26 C -0.176 4.176 27 C -0.146 4.146 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.235 0.765 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.547 3.978 -9.520 15.485 hybrid contribution 1.019 -0.387 -0.743 1.319 sum -10.528 3.591 -10.263 15.135 Atomic orbital electron populations 1.20748 0.91534 1.02561 1.01891 1.19795 0.95692 0.93172 0.99947 1.20754 0.93288 0.97291 1.03311 1.19633 0.93602 0.94602 0.98560 1.20823 1.00494 0.94153 1.01831 1.18948 0.93497 0.92417 1.01425 1.20758 0.93287 1.04896 0.95901 1.20315 0.82510 0.77858 0.90602 1.90635 1.55288 1.49154 1.45504 1.42885 1.06261 1.70539 1.08399 1.17708 0.96307 1.11172 0.82633 1.20876 0.99190 0.99374 0.91922 1.20326 0.98511 1.10737 0.95324 1.20465 0.95313 0.99883 0.97455 1.20863 1.00544 1.04228 0.91971 1.17383 0.89574 0.89544 0.93592 1.19223 1.17455 1.17175 0.95756 0.90844 1.25836 0.97660 0.94511 0.95951 1.69843 1.32187 1.14659 1.24833 0.86354 0.80403 0.79488 0.80819 1.19641 1.18432 1.20013 1.19668 0.93610 0.94729 0.98074 1.20883 0.99826 0.93892 1.03014 1.20769 0.93304 0.97346 1.03138 0.91509 0.91743 0.91768 0.86488 0.91290 0.91580 0.91322 0.88450 0.87970 0.76465 0.86358 0.89359 0.89521 0.86273 0.90824 0.90587 0.91784 0.91279 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.09 -1.08 5.88 -104.62 -0.62 -1.69 16 3 C -0.13 -1.66 9.36 -39.58 -0.37 -2.03 16 4 C -0.06 -0.89 5.88 -104.63 -0.62 -1.51 16 5 C -0.12 -1.38 9.19 36.00 0.33 -1.05 16 6 C -0.06 -0.93 4.37 -104.63 -0.46 -1.39 16 7 C -0.11 -1.55 4.75 -29.04 -0.14 -1.69 16 8 C 0.50 9.50 7.29 -10.99 -0.08 9.42 16 9 O -0.53 -11.95 13.10 5.55 0.07 -11.88 16 10 N -0.64 -12.87 5.10 -9.47 -0.05 -12.92 16 11 C 0.02 0.37 6.44 -83.17 -0.54 -0.16 16 12 C -0.09 -2.29 8.75 -39.44 -0.35 -2.64 16 13 C -0.23 -5.47 10.04 -39.35 -0.39 -5.86 16 14 C -0.11 -2.71 9.97 -39.99 -0.40 -3.10 16 15 C -0.16 -4.03 8.64 -39.28 -0.34 -4.37 16 16 C 0.10 2.65 5.58 -106.65 -0.60 2.05 16 17 C -0.47 -11.51 8.65 -37.87 -0.33 -11.83 16 18 H 0.07 1.66 6.69 -52.49 -0.35 1.30 16 19 C 0.08 1.88 5.14 -17.32 -0.09 1.79 16 20 N -0.79 -19.89 10.98 55.55 0.61 -19.28 16 21 Si 0.91 17.71 29.60 -169.99 -5.03 12.67 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.06 -0.88 5.88 -104.62 -0.62 -1.50 16 26 C -0.12 -1.59 9.60 36.01 0.35 -1.24 16 27 C -0.13 -1.70 9.36 -39.59 -0.37 -2.07 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 30 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 34 H 0.07 0.90 6.37 -51.93 -0.33 0.57 16 35 H 0.10 1.14 6.70 -51.93 -0.35 0.79 16 36 H 0.10 1.30 5.94 -51.93 -0.31 0.99 16 37 H 0.40 7.05 7.34 -40.82 -0.30 6.75 16 38 H 0.12 2.90 5.74 -52.49 -0.30 2.60 16 39 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.12 3.14 6.19 -52.48 -0.32 2.82 16 42 H 0.28 6.44 8.30 -40.82 -0.34 6.11 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 45 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -30.30 373.08 -10.37 -40.67 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -6.35 Total: 14.64 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -5.25 Total: -29.52 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.56 Total: -32.21 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.30 -10.37 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580005657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.172 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds