Wall clock time and date at job start Tue Mar 31 2020 13:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38238 * 119.99713 * 2 1 4 4 C 1.38232 * 120.00014 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99961 * 179.97438 * 4 3 2 6 6 C 1.38232 * 119.99830 * 359.97438 * 4 3 2 7 7 C 1.50699 * 120.00015 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47351 * 89.99498 * 7 6 4 9 9 O 1.21288 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00206 * 179.97438 * 8 7 6 11 11 C 1.39124 * 120.00238 * 184.92058 * 10 8 7 12 12 C 1.38648 * 120.28450 * 331.07282 * 11 10 8 13 13 C 1.38222 * 120.03444 * 180.25500 * 12 11 10 14 14 C 1.38868 * 120.61523 * 359.74296 * 13 12 11 15 15 C 1.36463 * 120.57707 * 359.97438 * 14 13 12 16 16 C 1.40735 * 119.94377 * 0.02562 * 15 14 13 17 17 C 1.41070 * 120.30234 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00144 * 205.07764 * 17 16 15 19 19 C 1.39957 * 119.99928 * 25.07528 * 17 16 15 20 20 N 1.30859 * 120.00087 * 17.59364 * 19 17 16 21 21 Si 1.86806 * 120.00080 * 197.59044 * 19 17 16 22 22 H 1.48498 * 109.47009 * 265.01870 * 21 19 17 23 23 H 1.48498 * 109.46850 * 25.02199 * 21 19 17 24 24 H 1.48501 * 109.46939 * 145.01872 * 21 19 17 25 25 C 1.38233 * 120.00044 * 0.27082 * 6 4 3 26 26 C 1.50707 * 119.99955 * 179.72923 * 25 6 4 27 27 C 1.38230 * 120.00276 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46653 * 90.00100 * 1 2 3 29 29 H 1.08997 * 109.46454 * 209.99734 * 1 2 3 30 30 H 1.08995 * 109.47174 * 330.00157 * 1 2 3 31 31 H 1.08006 * 120.00189 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47210 * 269.97710 * 5 4 3 33 33 H 1.08998 * 109.47255 * 29.97960 * 5 4 3 34 34 H 1.09005 * 109.47155 * 149.97745 * 5 4 3 35 35 H 1.09001 * 109.47037 * 329.99946 * 7 6 4 36 36 H 1.09000 * 109.47396 * 209.99713 * 7 6 4 37 37 H 0.97006 * 119.99904 * 4.91693 * 10 8 7 38 38 H 1.08001 * 119.98390 * 359.97074 * 12 11 10 39 39 H 1.08001 * 119.69310 * 179.76062 * 13 12 11 40 40 H 1.07999 * 119.70812 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.02847 * 180.02562 * 15 14 13 42 42 H 0.97002 * 119.99956 * 180.02562 * 20 19 17 43 43 H 1.08994 * 109.47021 * 90.00899 * 26 25 6 44 44 H 1.09002 * 109.46939 * 210.00233 * 26 25 6 45 45 H 1.08996 * 109.47093 * 330.00326 * 26 25 6 46 46 H 1.07998 * 119.99778 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3339 2.5024 0.0000 6 6 4.2717 0.0002 0.0016 7 6 5.7787 0.0002 0.0028 8 6 6.2800 0.0010 1.4240 9 8 5.4911 0.0010 2.3452 10 7 7.6049 0.0006 1.6713 11 6 8.0684 -0.1020 2.9790 12 6 7.3046 0.3791 4.0313 13 6 7.7726 0.2792 5.3281 14 6 9.0040 -0.3057 5.5925 15 6 9.7737 -0.7927 4.5763 16 6 9.3205 -0.7034 3.2469 17 6 10.1103 -1.2039 2.1906 18 1 9.9952 -0.8041 1.1940 19 6 11.0431 -2.2185 2.4342 20 7 10.9573 -2.9384 3.5236 21 14 12.4104 -2.5452 1.2040 22 1 11.9970 -3.6333 0.2819 23 1 12.6798 -1.3107 0.4240 24 1 13.6414 -2.9514 1.9286 25 6 3.5806 -1.1970 -0.0035 26 6 4.3342 -2.5021 -0.0085 27 6 2.1983 -1.1971 0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1326 -0.0004 32 1 4.5163 2.8162 -1.0278 33 1 3.7445 3.2624 0.5127 34 1 5.2860 2.3726 0.5146 35 1 6.1424 0.8900 -0.5112 36 1 6.1425 -0.8900 -0.5103 37 1 8.2353 0.0719 0.9374 38 1 6.3456 0.8363 3.8374 39 1 7.1748 0.6593 6.1433 40 1 9.3552 -0.3764 6.6114 41 1 10.7299 -1.2462 4.7921 42 1 11.6041 -3.6413 3.6926 43 1 4.5153 -2.8210 1.0179 44 1 3.7453 -3.2597 -0.5257 45 1 5.2868 -2.3696 -0.5214 46 1 1.6583 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580005657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:12 Heat of formation + Delta-G solvation = -21.382148 kcal Electronic energy + Delta-G solvation = -26787.709725 eV Core-core repulsion = 23219.404195 eV Total energy + Delta-G solvation = -3568.305530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54208 -40.41951 -38.84919 -35.56359 -35.42107 -35.17829 -34.48459 -31.56137 -31.33577 -29.71078 -28.81142 -27.60643 -27.17934 -26.06910 -23.48203 -22.60590 -21.68223 -21.29871 -20.60539 -19.21231 -18.39915 -17.77953 -17.38276 -16.89513 -16.53785 -16.02667 -15.80098 -15.39368 -15.21842 -14.85348 -14.66583 -14.39518 -14.18767 -14.09704 -13.90597 -13.87304 -13.69735 -13.58840 -13.51383 -13.47074 -13.17533 -12.81570 -12.74868 -12.69636 -12.42941 -12.18543 -12.05440 -11.87549 -11.73259 -11.69846 -11.52786 -11.03671 -10.99777 -10.42382 -9.40632 -9.33684 -9.26306 -8.78405 -8.57738 -6.25805 0.42070 0.51151 0.87052 1.06897 1.42426 1.52510 1.58173 1.88010 2.21687 2.44176 2.77800 2.90141 3.67098 3.73266 3.85344 3.98659 4.00161 4.14088 4.18701 4.39192 4.46289 4.53022 4.55623 4.61408 4.65386 4.69947 4.77202 4.77978 4.79005 4.81599 4.87012 4.98986 5.03017 5.08174 5.10557 5.25124 5.32951 5.38185 5.39014 5.47574 5.62710 5.70207 5.78145 5.79530 5.86367 6.16233 6.19446 6.20753 6.25764 6.66034 6.75668 6.97122 7.03144 7.47573 8.34942 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015738 B = 0.003362 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.671111 B = 8326.875514 C = 9071.310897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.077 4.077 5 C -0.114 4.114 6 C -0.088 4.088 7 C -0.096 4.096 8 C 0.502 3.498 9 O -0.566 6.566 10 N -0.638 5.638 11 C 0.013 3.987 12 C -0.109 4.109 13 C -0.237 4.237 14 C -0.118 4.118 15 C -0.181 4.181 16 C 0.076 3.924 17 C -0.486 4.486 18 H 0.089 0.911 19 C 0.036 3.964 20 N -0.826 5.826 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.251 1.251 24 H -0.273 1.273 25 C -0.079 4.079 26 C -0.117 4.117 27 C -0.142 4.142 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.412 0.588 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.287 0.713 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.649 4.576 -12.423 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.090 4.090 3 C -0.158 4.158 4 C -0.077 4.077 5 C -0.171 4.171 6 C -0.089 4.089 7 C -0.136 4.136 8 C 0.291 3.709 9 O -0.446 6.446 10 N -0.281 5.281 11 C -0.082 4.082 12 C -0.129 4.129 13 C -0.257 4.257 14 C -0.136 4.136 15 C -0.201 4.201 16 C 0.072 3.928 17 C -0.516 4.516 18 H 0.107 0.893 19 C -0.179 4.179 20 N -0.451 5.451 21 Si 0.802 3.198 22 H -0.189 1.189 23 H -0.174 1.174 24 H -0.198 1.198 25 C -0.079 4.079 26 C -0.174 4.174 27 C -0.160 4.160 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.155 0.845 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.249 0.751 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.118 4.365 -11.701 17.401 hybrid contribution 1.074 -0.495 -0.034 1.184 sum -11.044 3.869 -11.735 16.573 Atomic orbital electron populations 1.20801 0.89194 1.03341 1.03178 1.20229 0.97528 0.92783 0.98445 1.21087 0.93186 0.98441 1.03037 1.19967 0.94414 0.95082 0.98229 1.20844 0.99496 0.93523 1.03228 1.19116 0.93651 0.93091 1.03008 1.20732 0.93324 1.07007 0.92488 1.21142 0.81497 0.75954 0.92298 1.90606 1.56053 1.50602 1.47337 1.42912 1.07203 1.70677 1.07320 1.17848 0.95836 1.10111 0.84400 1.21020 0.99267 1.00032 0.92598 1.20604 0.98670 1.10519 0.95858 1.20686 0.95261 0.99426 0.98259 1.20913 1.00660 1.05622 0.92913 1.17737 0.90538 0.90411 0.94127 1.19578 1.18110 1.17621 0.96257 0.89260 1.26763 0.99561 0.93789 0.97816 1.69916 1.33190 1.15264 1.26766 0.85193 0.76768 0.79632 0.78159 1.18912 1.17444 1.19830 1.19928 0.94466 0.95016 0.98537 1.20867 1.00561 0.94278 1.01666 1.21065 0.93133 0.98552 1.03247 0.89842 0.91137 0.90851 0.84463 0.88887 0.90822 0.92937 0.85650 0.86303 0.75102 0.86694 0.87304 0.87336 0.87525 0.90215 0.93197 0.89593 0.90732 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 2 C -0.09 -2.10 5.88 -19.86 -0.12 -2.22 16 3 C -0.14 -3.37 9.36 22.27 0.21 -3.16 16 4 C -0.08 -2.05 5.88 -19.87 -0.12 -2.16 16 5 C -0.11 -2.53 9.19 71.23 0.65 -1.88 16 6 C -0.09 -2.55 4.37 -19.87 -0.09 -2.64 16 7 C -0.10 -2.64 4.75 29.10 0.14 -2.50 16 8 C 0.50 19.07 7.29 87.66 0.64 19.71 16 9 O -0.57 -26.11 13.10 -3.05 -0.04 -26.15 16 10 N -0.64 -25.77 5.10 -302.27 -1.54 -27.31 16 11 C 0.01 0.62 6.44 38.88 0.25 0.87 16 12 C -0.11 -5.45 8.75 22.36 0.20 -5.25 16 13 C -0.24 -11.42 10.04 22.42 0.22 -11.20 16 14 C -0.12 -5.75 9.97 22.01 0.22 -5.54 16 15 C -0.18 -9.61 8.64 22.47 0.19 -9.42 16 16 C 0.08 3.98 5.58 -21.18 -0.12 3.86 16 17 C -0.49 -24.09 8.65 23.38 0.20 -23.88 16 18 H 0.09 3.97 6.69 -2.91 -0.02 3.95 16 19 C 0.04 1.71 5.14 85.25 0.44 2.15 16 20 N -0.83 -42.15 10.98 21.83 0.24 -41.91 16 21 Si 0.98 35.68 29.60 68.60 2.03 37.71 16 22 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 23 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 24 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 25 C -0.08 -2.26 5.88 -19.86 -0.12 -2.38 16 26 C -0.12 -3.07 9.60 71.24 0.68 -2.38 16 27 C -0.14 -3.62 9.36 22.27 0.21 -3.41 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 30 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 31 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.48 8.09 -2.39 -0.02 1.47 16 34 H 0.05 1.32 6.37 -2.38 -0.02 1.31 16 35 H 0.13 2.69 6.70 -2.39 -0.02 2.68 16 36 H 0.12 2.84 5.94 -2.39 -0.01 2.82 16 37 H 0.41 14.28 7.34 -92.70 -0.68 13.60 16 38 H 0.12 5.79 5.74 -2.91 -0.02 5.77 16 39 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.11 5.83 6.19 -2.91 -0.02 5.81 16 42 H 0.29 13.31 8.30 -92.71 -0.77 12.55 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.09 1.78 8.09 -2.39 -0.02 1.77 16 45 H 0.07 1.80 5.94 -2.39 -0.01 1.78 16 46 H 0.13 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -66.77 373.08 5.43 -61.34 By element: Atomic # 1 Polarization: 48.45 SS G_CDS: 0.33 Total: 48.78 kcal Atomic # 6 Polarization: -56.87 SS G_CDS: 4.42 Total: -52.45 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -1.30 Total: -69.23 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.04 Total: -26.15 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Total: -66.77 5.43 -61.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580005657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.958 kcal (2) G-P(sol) polarization free energy of solvation -66.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds