Wall clock time and date at job start Tue Mar 31 2020 14:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47040 * 2 1 4 4 C 1.38233 * 119.99619 * 90.00011 * 3 2 1 5 5 C 1.38243 * 119.99803 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00014 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99814 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47392 * 89.99869 * 7 6 5 9 9 N 1.46497 * 109.47087 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28208 * 357.04743 * 12 10 9 14 14 C 1.38217 * 120.09197 * 180.28466 * 13 12 10 15 15 C 1.38826 * 120.68006 * 359.71249 * 14 13 12 16 16 C 1.37600 * 120.56680 * 359.97438 * 15 14 13 17 17 C 1.40709 * 119.88058 * 0.02562 * 16 15 14 18 18 C 1.40892 * 120.32698 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00405 * 145.84398 * 18 17 16 20 20 C 1.40277 * 119.99993 * 325.84525 * 18 17 16 21 21 N 1.30635 * 119.99643 * 340.94173 * 20 18 17 22 22 Si 1.86791 * 120.00406 * 160.94462 * 20 18 17 23 23 H 1.48498 * 109.47690 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47328 * 300.00333 * 22 20 18 25 25 H 1.48504 * 109.47177 * 59.99546 * 22 20 18 26 26 C 1.38230 * 119.99841 * 0.24911 * 6 5 4 27 27 C 1.38235 * 120.00128 * 270.02905 * 3 2 1 28 28 H 1.09000 * 109.47309 * 299.99972 * 1 2 3 29 29 H 1.09002 * 109.47728 * 59.99667 * 1 2 3 30 30 H 1.09001 * 109.46748 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47065 * 240.00958 * 2 1 3 32 32 H 1.08996 * 109.47322 * 120.00233 * 2 1 3 33 33 H 1.08001 * 120.00491 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.99572 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47218 * 329.99048 * 7 6 5 36 36 H 1.09002 * 109.46638 * 210.00077 * 7 6 5 37 37 H 1.08997 * 109.47147 * 59.99621 * 8 7 6 38 38 H 1.09003 * 109.46728 * 299.99411 * 8 7 6 39 39 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 40 40 H 1.07997 * 119.94959 * 359.97438 * 13 12 10 41 41 H 1.07997 * 119.66279 * 179.73914 * 14 13 12 42 42 H 1.07994 * 119.72040 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.05892 * 180.02562 * 16 15 14 44 44 H 0.96993 * 120.00043 * 354.76364 * 21 20 18 45 45 H 1.07996 * 120.00054 * 179.72485 * 26 6 5 46 46 H 1.07994 * 119.99999 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9544 4.0273 0.0001 7 6 3.4566 5.4481 0.0002 8 6 4.9866 5.4482 0.0002 9 7 5.4749 6.8294 -0.0003 10 6 6.7999 7.0758 0.0002 11 8 7.5902 6.1515 0.0015 12 6 7.2913 8.4658 0.0003 13 6 6.3932 9.5280 -0.0621 14 6 6.8585 10.8294 -0.0678 15 6 8.2197 11.0954 -0.0057 16 6 9.1312 10.0669 0.0632 17 6 8.6836 8.7329 0.0705 18 6 9.6086 7.6725 0.1413 19 1 9.3542 6.7686 0.6746 20 6 10.8603 7.7909 -0.4809 21 7 11.0426 8.6841 -1.4166 22 14 12.2662 6.6715 0.0284 23 1 13.4731 6.9961 -0.7736 24 1 12.5617 6.8723 1.4698 25 1 11.8818 5.2563 -0.2054 26 6 2.7186 3.3776 -1.1970 27 6 2.2621 2.0728 -1.1971 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.0823 1.5635 2.1325 34 1 2.9035 3.8848 2.1326 35 1 3.0932 5.9619 0.8901 36 1 3.0933 5.9619 -0.8898 37 1 5.3500 4.9344 -0.8897 38 1 5.3499 4.9344 0.8903 39 1 4.8445 7.5667 -0.0002 40 1 5.3319 9.3345 -0.1112 41 1 6.1560 11.6480 -0.1206 42 1 8.5661 12.1182 -0.0107 43 1 10.1882 10.2831 0.1116 44 1 10.2944 9.2132 -1.7344 45 1 2.8943 3.8882 -2.1323 46 1 2.0821 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601198360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:03 Heat of formation + Delta-G solvation = -20.006505 kcal Electronic energy + Delta-G solvation = -25442.542720 eV Core-core repulsion = 21874.296842 eV Total energy + Delta-G solvation = -3568.245878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.76840 -38.95915 -37.06993 -35.55711 -34.17059 -33.66586 -31.45650 -31.05696 -29.97073 -29.35172 -27.75328 -25.30591 -24.24159 -22.87610 -22.66387 -21.86695 -20.86644 -20.59843 -19.45179 -18.06943 -16.55230 -16.16759 -15.98140 -15.55726 -14.98154 -14.74679 -14.72843 -14.10658 -14.10414 -13.93227 -13.84223 -13.64269 -13.49120 -13.19740 -12.96605 -12.66747 -12.44844 -12.10968 -12.01763 -11.85450 -11.57520 -11.52550 -11.21182 -11.11459 -11.00338 -10.95294 -10.85447 -10.74070 -10.35630 -10.15867 -9.61045 -9.07227 -9.04422 -8.67046 -8.47954 -8.38522 -7.78705 -7.60175 -7.13796 -4.45600 1.17794 1.28253 2.24750 2.74172 3.21316 3.31934 3.41966 3.56294 3.93860 4.05035 4.08447 4.51498 4.58196 4.65014 4.83035 4.87033 4.87691 5.05844 5.13810 5.15325 5.24956 5.34741 5.42173 5.47700 5.56014 5.58690 5.67173 5.83965 5.86075 5.90245 5.93965 5.97949 6.06542 6.12776 6.23842 6.29248 6.46269 6.52210 6.53439 6.71974 6.87778 6.99321 7.11421 7.28371 7.49596 7.61362 7.72486 7.89445 8.09782 8.21923 8.38141 8.73907 8.86764 9.37220 10.04915 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.002450 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.458806 B =11426.489561 C =12749.940259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.079 4.079 7 C -0.092 4.092 8 C 0.132 3.868 9 N -0.751 5.751 10 C 0.563 3.437 11 O -0.537 6.537 12 C -0.266 4.266 13 C -0.043 4.043 14 C -0.260 4.260 15 C -0.076 4.076 16 C -0.201 4.201 17 C 0.120 3.880 18 C -0.466 4.466 19 H 0.105 0.895 20 C 0.030 3.970 21 N -0.793 5.793 22 Si 1.070 2.930 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.273 1.273 26 C -0.111 4.111 27 C -0.117 4.117 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.391 0.609 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.298 0.702 45 H 0.122 0.878 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.435 -10.705 2.040 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.080 4.080 7 C -0.130 4.130 8 C 0.008 3.992 9 N -0.406 5.406 10 C 0.357 3.643 11 O -0.415 6.415 12 C -0.271 4.271 13 C -0.062 4.062 14 C -0.279 4.279 15 C -0.095 4.095 16 C -0.220 4.220 17 C 0.116 3.884 18 C -0.492 4.492 19 H 0.123 0.877 20 C -0.191 4.191 21 N -0.417 5.417 22 Si 0.894 3.106 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.198 1.198 26 C -0.129 4.129 27 C -0.135 4.135 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.225 0.775 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.225 -11.682 1.723 19.268 hybrid contribution -2.115 0.906 0.171 2.308 sum -17.341 -10.776 1.895 20.504 Atomic orbital electron populations 1.21746 0.94810 1.01590 1.02203 1.20538 0.96093 0.92797 1.02820 1.19882 0.99541 0.96192 0.93278 1.20993 1.00175 0.94864 0.97464 1.21070 0.99261 0.94861 0.97689 1.19717 0.99139 0.95820 0.93294 1.20806 0.95524 0.93203 1.03430 1.21068 0.91432 0.84596 1.02082 1.46022 1.07860 1.07101 1.79585 1.18376 0.80597 0.89845 0.75504 1.90683 1.54404 1.46444 1.50006 1.19399 0.94561 0.90326 1.22775 1.20714 0.96353 0.93006 0.96164 1.20239 0.94894 0.95166 1.17651 1.20742 0.93496 0.97252 0.97985 1.21253 0.98394 0.92578 1.09758 1.17509 0.90702 0.92492 0.87743 1.21184 0.98056 1.02973 1.27035 0.87696 1.27279 1.01011 0.97531 0.93285 1.70388 1.37601 1.14955 1.18732 0.83559 0.74295 0.75742 0.77053 1.19938 1.19949 1.19774 1.21073 0.99237 0.94854 0.97705 1.20995 1.00178 0.94833 0.97474 0.92584 0.92586 0.92486 0.91093 0.91095 0.86239 0.85968 0.90442 0.90447 0.92101 0.92099 0.77482 0.89113 0.88907 0.88883 0.87525 0.88813 0.85963 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.09 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.09 -0.86 5.13 -104.62 -0.54 -1.39 16 4 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 5 C -0.11 -1.19 9.70 -39.58 -0.38 -1.58 16 6 C -0.08 -0.90 5.13 -104.63 -0.54 -1.43 16 7 C -0.09 -1.04 5.46 -27.89 -0.15 -1.19 16 8 C 0.13 2.04 5.66 -4.04 -0.02 2.01 16 9 N -0.75 -13.32 5.51 -61.38 -0.34 -13.66 16 10 C 0.56 13.20 7.73 -12.52 -0.10 13.11 16 11 O -0.54 -14.48 13.55 5.26 0.07 -14.41 16 12 C -0.27 -6.50 5.92 -104.37 -0.62 -7.12 16 13 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 14 C -0.26 -5.45 10.03 -39.37 -0.39 -5.84 16 15 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 16 C -0.20 -5.03 7.86 -38.88 -0.31 -5.33 16 17 C 0.12 3.22 5.18 -106.54 -0.55 2.67 16 18 C -0.47 -12.94 7.66 -37.81 -0.29 -13.23 16 19 H 0.11 3.05 5.91 -52.49 -0.31 2.74 16 20 C 0.03 0.80 5.04 -17.29 -0.09 0.71 16 21 N -0.79 -21.42 12.57 55.56 0.70 -20.72 16 22 Si 1.07 22.79 29.98 -169.99 -5.10 17.69 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 C -0.11 -1.20 9.70 -39.58 -0.38 -1.58 16 27 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.39 5.87 6.51 -40.82 -0.27 5.61 16 40 H 0.09 1.56 6.41 -52.49 -0.34 1.22 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.11 2.72 6.93 -52.49 -0.36 2.36 16 44 H 0.30 8.23 6.54 -40.82 -0.27 7.96 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -30.90 381.73 -11.28 -42.18 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.67 Total: 11.20 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -5.70 Total: -28.03 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.36 Total: -34.38 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.07 Total: -14.41 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.10 Total: 17.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.90 -11.28 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601198360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.173 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds