Wall clock time and date at job start Tue Mar 31 2020 14:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47040 * 2 1 4 4 C 1.38233 * 119.99619 * 90.00011 * 3 2 1 5 5 C 1.38243 * 119.99803 * 179.97438 * 4 3 2 6 6 C 1.38237 * 120.00014 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99814 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47392 * 89.99869 * 7 6 5 9 9 N 1.46497 * 109.47087 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28208 * 357.04743 * 12 10 9 14 14 C 1.38217 * 120.09197 * 180.28466 * 13 12 10 15 15 C 1.38826 * 120.68006 * 359.71249 * 14 13 12 16 16 C 1.37600 * 120.56680 * 359.97438 * 15 14 13 17 17 C 1.40709 * 119.88058 * 0.02562 * 16 15 14 18 18 C 1.40892 * 120.32698 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00405 * 145.84398 * 18 17 16 20 20 C 1.40277 * 119.99993 * 325.84525 * 18 17 16 21 21 N 1.30635 * 119.99643 * 340.94173 * 20 18 17 22 22 Si 1.86791 * 120.00406 * 160.94462 * 20 18 17 23 23 H 1.48498 * 109.47690 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47328 * 300.00333 * 22 20 18 25 25 H 1.48504 * 109.47177 * 59.99546 * 22 20 18 26 26 C 1.38230 * 119.99841 * 0.24911 * 6 5 4 27 27 C 1.38235 * 120.00128 * 270.02905 * 3 2 1 28 28 H 1.09000 * 109.47309 * 299.99972 * 1 2 3 29 29 H 1.09002 * 109.47728 * 59.99667 * 1 2 3 30 30 H 1.09001 * 109.46748 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47065 * 240.00958 * 2 1 3 32 32 H 1.08996 * 109.47322 * 120.00233 * 2 1 3 33 33 H 1.08001 * 120.00491 * 359.97438 * 4 3 2 34 34 H 1.08003 * 119.99572 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47218 * 329.99048 * 7 6 5 36 36 H 1.09002 * 109.46638 * 210.00077 * 7 6 5 37 37 H 1.08997 * 109.47147 * 59.99621 * 8 7 6 38 38 H 1.09003 * 109.46728 * 299.99411 * 8 7 6 39 39 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 40 40 H 1.07997 * 119.94959 * 359.97438 * 13 12 10 41 41 H 1.07997 * 119.66279 * 179.73914 * 14 13 12 42 42 H 1.07994 * 119.72040 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.05892 * 180.02562 * 16 15 14 44 44 H 0.96993 * 120.00043 * 354.76364 * 21 20 18 45 45 H 1.07996 * 120.00054 * 179.72485 * 26 6 5 46 46 H 1.07994 * 119.99999 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9544 4.0273 0.0001 7 6 3.4566 5.4481 0.0002 8 6 4.9866 5.4482 0.0002 9 7 5.4749 6.8294 -0.0003 10 6 6.7999 7.0758 0.0002 11 8 7.5902 6.1515 0.0015 12 6 7.2913 8.4658 0.0003 13 6 6.3932 9.5280 -0.0621 14 6 6.8585 10.8294 -0.0678 15 6 8.2197 11.0954 -0.0057 16 6 9.1312 10.0669 0.0632 17 6 8.6836 8.7329 0.0705 18 6 9.6086 7.6725 0.1413 19 1 9.3542 6.7686 0.6746 20 6 10.8603 7.7909 -0.4809 21 7 11.0426 8.6841 -1.4166 22 14 12.2662 6.6715 0.0284 23 1 13.4731 6.9961 -0.7736 24 1 12.5617 6.8723 1.4698 25 1 11.8818 5.2563 -0.2054 26 6 2.7186 3.3776 -1.1970 27 6 2.2621 2.0728 -1.1971 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.0823 1.5635 2.1325 34 1 2.9035 3.8848 2.1326 35 1 3.0932 5.9619 0.8901 36 1 3.0933 5.9619 -0.8898 37 1 5.3500 4.9344 -0.8897 38 1 5.3499 4.9344 0.8903 39 1 4.8445 7.5667 -0.0002 40 1 5.3319 9.3345 -0.1112 41 1 6.1560 11.6480 -0.1206 42 1 8.5661 12.1182 -0.0107 43 1 10.1882 10.2831 0.1116 44 1 10.2944 9.2132 -1.7344 45 1 2.8943 3.8882 -2.1323 46 1 2.0821 1.5637 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601198360.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:02 Heat of formation + Delta-G solvation = -35.337082 kcal Electronic energy + Delta-G solvation = -25443.207503 eV Core-core repulsion = 21874.296842 eV Total energy + Delta-G solvation = -3568.910661 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.90002 -40.40181 -38.83575 -36.74017 -35.86134 -34.98068 -32.65154 -31.82338 -31.62678 -31.10390 -28.80264 -27.10978 -25.35361 -23.96307 -23.64865 -23.18027 -22.62824 -21.52006 -21.06287 -19.94643 -18.15462 -17.22398 -16.86812 -16.77435 -16.52114 -16.12541 -15.99051 -15.79892 -15.64618 -15.42264 -14.79780 -14.63293 -14.48513 -14.36239 -14.09265 -14.05045 -13.92732 -13.68747 -13.24181 -12.93443 -12.76686 -12.71722 -12.50225 -12.48042 -12.39547 -12.02974 -11.98229 -11.94711 -11.70851 -11.64745 -11.45748 -10.97200 -10.38448 -10.03851 -9.82150 -9.61150 -9.49784 -9.43261 -9.10759 -6.46846 0.37989 0.39713 0.49869 0.90567 1.45382 1.61032 1.75707 2.24557 2.30183 2.39147 2.73727 2.83314 3.55842 3.82021 3.85116 4.00960 4.04571 4.08892 4.14911 4.25592 4.29374 4.34537 4.45037 4.50310 4.56095 4.59078 4.64268 4.71200 4.77878 4.87969 4.91820 5.03309 5.05402 5.08337 5.14003 5.18366 5.22842 5.37763 5.42815 5.50544 5.57433 5.65307 5.70577 5.71147 5.72778 5.89401 5.96422 6.11954 6.20023 6.33620 6.68733 6.85316 6.92363 7.60020 8.03755 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.002450 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.458806 B =11426.489561 C =12749.940259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.127 4.127 5 C -0.122 4.122 6 C -0.097 4.097 7 C -0.076 4.076 8 C 0.135 3.865 9 N -0.727 5.727 10 C 0.556 3.444 11 O -0.582 6.582 12 C -0.284 4.284 13 C -0.041 4.041 14 C -0.244 4.244 15 C -0.072 4.072 16 C -0.226 4.226 17 C 0.094 3.906 18 C -0.511 4.511 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.817 5.817 22 Si 1.115 2.885 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.273 1.273 26 C -0.123 4.123 27 C -0.127 4.127 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.046 0.954 39 H 0.408 0.592 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.283 0.717 45 H 0.129 0.871 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.318 -10.156 2.339 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.144 4.144 5 C -0.140 4.140 6 C -0.097 4.097 7 C -0.113 4.113 8 C 0.011 3.989 9 N -0.382 5.382 10 C 0.349 3.651 11 O -0.464 6.464 12 C -0.289 4.289 13 C -0.059 4.059 14 C -0.262 4.262 15 C -0.090 4.090 16 C -0.245 4.245 17 C 0.090 3.910 18 C -0.539 4.539 19 H 0.097 0.903 20 C -0.219 4.219 21 N -0.441 5.441 22 Si 0.932 3.068 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.198 1.198 26 C -0.141 4.141 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.245 0.755 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.177 -11.104 2.028 21.396 hybrid contribution -1.530 0.807 0.099 1.733 sum -19.707 -10.296 2.127 22.336 Atomic orbital electron populations 1.21724 0.94006 1.02405 1.01925 1.20592 0.96712 0.91443 1.03483 1.20214 0.98712 0.97249 0.93072 1.21268 0.99955 0.94788 0.98433 1.21286 0.99328 0.95416 0.97937 1.19773 1.00263 0.95938 0.93768 1.20678 0.91802 0.93890 1.04962 1.21153 0.94457 0.82698 1.00589 1.45755 1.06151 1.08897 1.77355 1.18473 0.82128 0.89212 0.75279 1.90664 1.56139 1.47507 1.52052 1.19809 0.94549 0.92114 1.22438 1.21170 0.98230 0.92168 0.94380 1.20829 0.94970 0.96392 1.14054 1.21170 0.93936 0.98031 0.95913 1.21206 0.98355 0.92931 1.11999 1.17918 0.92072 0.93170 0.87814 1.21095 0.99989 1.02895 1.29904 0.90276 1.28472 1.02916 0.98129 0.92407 1.70498 1.36703 1.16739 1.20152 0.83031 0.72075 0.73938 0.77711 1.18730 1.18320 1.19798 1.21279 0.99400 0.95432 0.97947 1.21262 1.00029 0.94757 0.98451 0.92832 0.92887 0.91147 0.90485 0.90422 0.84619 0.85167 0.88803 0.88950 0.93799 0.93539 0.75452 0.84455 0.84415 0.85718 0.89283 0.90514 0.85316 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.09 -1.10 6.06 29.85 0.18 -0.92 16 3 C -0.09 -1.65 5.13 -19.86 -0.10 -1.76 16 4 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 5 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 6 C -0.10 -2.07 5.13 -19.87 -0.10 -2.18 16 7 C -0.08 -1.56 5.46 29.85 0.16 -1.40 16 8 C 0.13 4.08 5.66 86.38 0.49 4.57 16 9 N -0.73 -24.92 5.51 -466.37 -2.57 -27.49 16 10 C 0.56 26.42 7.73 86.66 0.67 27.09 16 11 O -0.58 -32.91 13.55 -4.09 -0.06 -32.96 16 12 C -0.28 -13.89 5.92 -19.70 -0.12 -14.01 16 13 C -0.04 -1.59 9.53 22.50 0.21 -1.38 16 14 C -0.24 -9.14 10.03 22.41 0.22 -8.92 16 15 C -0.07 -3.03 10.01 22.26 0.22 -2.81 16 16 C -0.23 -11.51 7.86 22.72 0.18 -11.33 16 17 C 0.09 5.23 5.18 -21.11 -0.11 5.12 16 18 C -0.51 -30.11 7.66 23.42 0.18 -29.94 16 19 H 0.08 4.95 5.91 -2.91 -0.02 4.94 16 20 C 0.00 -0.22 5.04 85.37 0.43 0.21 16 21 N -0.82 -46.32 12.57 21.88 0.27 -46.04 16 22 Si 1.12 48.09 29.98 68.60 2.06 50.14 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 C -0.12 -2.53 9.70 22.27 0.22 -2.32 16 27 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.08 0.90 8.09 -2.39 -0.02 0.89 16 33 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 36 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 10.96 6.51 -92.71 -0.60 10.35 16 40 H 0.14 3.99 6.41 -2.91 -0.02 3.97 16 41 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.09 4.76 6.93 -2.91 -0.02 4.74 16 44 H 0.28 16.48 6.54 -92.71 -0.61 15.87 16 45 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 46 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -71.99 381.73 4.35 -67.64 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: 0.54 Total: 36.11 kcal Atomic # 6 Polarization: -51.50 SS G_CDS: 4.10 Total: -47.40 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -2.29 Total: -73.53 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.06 Total: -32.96 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.06 Total: 50.14 kcal Total: -71.99 4.35 -67.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601198360.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.301 kcal (2) G-P(sol) polarization free energy of solvation -71.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds