Wall clock time and date at job start Tue Mar 31 2020 13:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 119.99885 * 2 1 4 4 C 1.38217 * 119.99925 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99924 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99724 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47293 * 90.00414 * 6 5 4 8 8 N 1.46504 * 109.47327 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00020 * 179.97438 * 8 7 6 10 10 O 1.21617 * 120.00035 * 0.02562 * 9 8 7 11 11 C 1.47433 * 120.00159 * 179.97438 * 9 8 7 12 12 C 1.39222 * 120.27950 * 355.67294 * 11 9 8 13 13 C 1.38228 * 120.09079 * 180.27937 * 12 11 9 14 14 C 1.38824 * 120.67423 * 359.71805 * 13 12 11 15 15 C 1.37597 * 120.57318 * 0.02562 * 14 13 12 16 16 C 1.40711 * 119.87929 * 359.97438 * 15 14 13 17 17 C 1.40891 * 120.32596 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99615 * 216.32947 * 17 16 15 19 19 C 1.40267 * 120.00197 * 36.33258 * 17 16 15 20 20 N 1.30625 * 120.00058 * 190.50733 * 19 17 16 21 21 Si 1.86802 * 120.00015 * 10.50211 * 19 17 16 22 22 H 1.48509 * 109.46965 * 267.22708 * 21 19 17 23 23 H 1.48499 * 109.47061 * 27.22336 * 21 19 17 24 24 H 1.48502 * 109.47123 * 147.22806 * 21 19 17 25 25 C 1.38213 * 119.99793 * 0.24895 * 5 4 3 26 26 C 1.38208 * 120.00433 * 180.02562 * 2 1 3 27 27 C 1.50703 * 119.99661 * 359.97438 * 26 2 1 28 28 H 1.08994 * 109.47212 * 89.99214 * 1 2 3 29 29 H 1.08999 * 109.46698 * 209.99861 * 1 2 3 30 30 H 1.09006 * 109.46578 * 329.99210 * 1 2 3 31 31 H 1.07999 * 119.99987 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.00028 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47477 * 329.99867 * 6 5 4 34 34 H 1.09004 * 109.47061 * 210.00109 * 6 5 4 35 35 H 1.08992 * 109.47736 * 59.99651 * 7 6 5 36 36 H 1.09004 * 109.47211 * 299.99474 * 7 6 5 37 37 H 0.97001 * 119.99703 * 359.97438 * 8 7 6 38 38 H 1.08001 * 119.95839 * 359.97438 * 12 11 9 39 39 H 1.08003 * 119.66408 * 179.73476 * 13 12 11 40 40 H 1.08000 * 119.71145 * 180.02562 * 14 13 12 41 41 H 1.07996 * 120.06329 * 180.02562 * 15 14 13 42 42 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 43 43 H 1.08003 * 119.99906 * 179.72235 * 25 5 4 44 44 H 1.09002 * 109.47334 * 90.00182 * 27 26 2 45 45 H 1.09003 * 109.47368 * 210.00142 * 27 26 2 46 46 H 1.09004 * 109.47220 * 330.00234 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0001 -0.0028 7 6 6.2898 -0.0006 1.4393 8 7 7.7548 0.0001 1.4382 9 6 8.4296 0.0001 2.6048 10 8 7.8223 -0.0009 3.6585 11 6 9.9039 0.0002 2.6037 12 6 10.6050 -0.0904 1.4043 13 6 11.9873 -0.0958 1.4083 14 6 12.6925 -0.0055 2.6007 15 6 12.0275 0.0905 3.8015 16 6 10.6206 0.0982 3.8250 17 6 9.9302 0.1967 5.0492 18 1 9.0064 -0.3441 5.1932 19 6 10.4424 0.9971 6.0809 20 7 9.9228 0.9317 7.2776 21 14 11.8677 2.1565 5.7436 22 1 13.1477 1.4713 6.0559 23 1 11.8550 2.5533 4.3127 24 1 11.7335 3.3664 6.5942 25 6 3.5806 -1.1969 -0.0073 26 6 2.1981 -1.1969 -0.0005 27 6 1.4446 -2.5020 -0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5140 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1327 -0.0010 33 1 6.1416 0.8903 -0.5165 34 1 6.1416 -0.8896 -0.5173 35 1 5.9269 -0.8907 1.9530 36 1 5.9269 0.8892 1.9539 37 1 8.2391 0.0005 0.5977 38 1 10.0682 -0.1616 0.4699 39 1 12.5242 -0.1707 0.4742 40 1 13.7724 -0.0107 2.5856 41 1 12.5844 0.1608 4.7241 42 1 10.2768 1.4855 7.9910 43 1 4.1206 -2.1322 -0.0127 44 1 1.2626 -2.8165 -1.0282 45 1 2.0339 -3.2618 0.5129 46 1 0.4924 -2.3718 0.5137 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:51 Heat of formation + Delta-G solvation = -26.862900 kcal Electronic energy + Delta-G solvation = -25649.493699 eV Core-core repulsion = 22080.950505 eV Total energy + Delta-G solvation = -3568.543193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.92198 -40.51470 -38.80026 -36.70311 -35.57134 -34.63899 -33.15565 -32.29986 -32.12789 -30.59782 -28.23258 -27.41846 -26.67156 -24.43123 -23.63089 -22.98662 -22.58976 -21.39925 -20.68380 -19.46030 -18.33677 -17.24791 -16.99376 -16.93727 -16.56477 -16.07400 -15.82412 -15.79198 -15.65712 -15.25929 -15.11165 -14.73358 -14.46593 -14.18909 -13.99060 -13.81280 -13.63286 -13.59225 -13.45529 -13.29277 -13.23307 -12.71348 -12.68596 -12.52116 -12.30920 -12.27735 -12.19058 -12.03571 -11.79844 -11.68168 -11.61320 -11.08544 -10.34554 -10.02046 -9.64773 -9.51179 -9.41151 -9.31784 -8.82542 -6.48834 0.34469 0.39039 0.48257 0.84170 1.22913 1.36706 1.45911 2.09556 2.25852 2.40339 2.71351 2.81169 3.53817 3.83449 3.86879 4.03331 4.05782 4.12806 4.14975 4.26105 4.29802 4.35969 4.45198 4.48513 4.57318 4.71655 4.72379 4.75034 4.81835 4.83683 4.87747 4.90969 4.99111 5.02478 5.06429 5.09568 5.27855 5.30090 5.39732 5.47336 5.53969 5.61057 5.69419 5.70663 5.76294 5.87598 5.96864 6.15495 6.27937 6.47705 6.67861 6.78999 6.92645 7.64198 8.21982 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.002517 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.447014 B =11121.077656 C =11884.462668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.103 4.103 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.094 4.094 6 C -0.074 4.074 7 C 0.135 3.865 8 N -0.725 5.725 9 C 0.552 3.448 10 O -0.581 6.581 11 C -0.266 4.266 12 C -0.039 4.039 13 C -0.229 4.229 14 C -0.062 4.062 15 C -0.246 4.246 16 C 0.098 3.902 17 C -0.451 4.451 18 H 0.070 0.930 19 C 0.034 3.966 20 N -0.851 5.851 21 Si 0.969 3.031 22 H -0.247 1.247 23 H -0.248 1.248 24 H -0.281 1.281 25 C -0.125 4.125 26 C -0.100 4.100 27 C -0.116 4.116 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.410 0.590 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.293 0.707 43 H 0.128 0.872 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 -1.044 -19.910 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.103 4.103 3 C -0.145 4.145 4 C -0.147 4.147 5 C -0.094 4.094 6 C -0.112 4.112 7 C 0.011 3.989 8 N -0.380 5.380 9 C 0.344 3.656 10 O -0.462 6.462 11 C -0.270 4.270 12 C -0.057 4.057 13 C -0.248 4.248 14 C -0.080 4.080 15 C -0.265 4.265 16 C 0.094 3.906 17 C -0.480 4.480 18 H 0.088 0.912 19 C -0.180 4.180 20 N -0.478 5.478 21 Si 0.791 3.209 22 H -0.172 1.172 23 H -0.172 1.172 24 H -0.207 1.207 25 C -0.143 4.143 26 C -0.100 4.100 27 C -0.172 4.172 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.248 0.752 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.146 0.854 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.641 -1.006 -18.883 22.206 hybrid contribution 0.454 0.430 0.608 0.872 sum -11.187 -0.577 -18.275 21.435 Atomic orbital electron populations 1.20893 0.89583 1.03538 1.03112 1.20130 0.97442 0.92537 1.00147 1.21283 0.94140 0.98405 1.00655 1.21265 0.94802 0.97944 1.00728 1.19768 0.95114 0.93627 1.00921 1.20671 0.91217 1.05085 0.94204 1.21131 0.79617 1.00442 0.97728 1.45726 1.06731 1.77294 1.08213 1.18599 0.88335 0.75412 0.83236 1.90737 1.71123 1.51612 1.32737 1.19801 0.91396 1.21191 0.94651 1.21253 0.94960 0.93974 0.95558 1.20964 0.93546 1.12229 0.98072 1.21265 1.00072 0.94582 0.92100 1.21243 0.93523 1.13487 0.98286 1.17845 0.92329 0.88289 0.92175 1.19945 1.07972 1.24390 0.95663 0.91188 1.27143 0.99242 0.98372 0.93215 1.69632 1.40151 1.35396 1.02576 0.85469 0.78109 0.77308 0.80052 1.17158 1.17190 1.20740 1.21158 0.94114 0.97940 1.01093 1.20087 0.93706 0.96159 1.00052 1.20898 1.00270 0.92923 1.03130 0.90109 0.90430 0.91080 0.84549 0.85296 0.88729 0.88667 0.93818 0.93977 0.75213 0.83940 0.83622 0.84528 0.88093 0.89663 0.85392 0.90028 0.91564 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.60 71.24 0.68 -0.81 16 2 C -0.10 -1.96 5.88 -19.87 -0.12 -2.07 16 3 C -0.13 -2.53 9.70 22.27 0.22 -2.31 16 4 C -0.13 -2.81 9.70 22.27 0.22 -2.60 16 5 C -0.09 -2.10 5.13 -19.87 -0.10 -2.20 16 6 C -0.07 -1.55 5.46 29.84 0.16 -1.39 16 7 C 0.13 4.16 5.66 86.38 0.49 4.65 16 8 N -0.72 -24.48 5.51 -466.36 -2.57 -27.04 16 9 C 0.55 26.07 7.72 86.67 0.67 26.74 16 10 O -0.58 -34.00 13.54 -4.08 -0.06 -34.05 16 11 C -0.27 -12.40 5.92 -19.70 -0.12 -12.52 16 12 C -0.04 -1.38 9.52 22.50 0.21 -1.16 16 13 C -0.23 -7.54 10.03 22.41 0.22 -7.32 16 14 C -0.06 -2.29 10.01 22.26 0.22 -2.06 16 15 C -0.25 -11.39 7.00 22.72 0.16 -11.23 16 16 C 0.10 5.19 5.03 -21.11 -0.11 5.09 16 17 C -0.45 -27.64 8.31 23.41 0.19 -27.45 16 18 H 0.07 4.92 5.96 -2.91 -0.02 4.91 16 19 C 0.03 1.95 5.47 85.37 0.47 2.42 16 20 N -0.85 -50.64 13.92 21.88 0.30 -50.33 16 21 Si 0.97 44.38 24.52 68.60 1.68 46.06 16 22 H -0.25 -10.29 6.76 99.48 0.67 -9.62 16 23 H -0.25 -11.39 6.73 99.48 0.67 -10.72 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 C -0.13 -2.72 9.36 22.27 0.21 -2.51 16 26 C -0.10 -1.99 5.88 -19.87 -0.12 -2.11 16 27 C -0.12 -1.67 9.60 71.24 0.68 -0.98 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.88 5.95 -2.39 -0.01 0.86 16 30 H 0.07 0.83 8.09 -2.38 -0.02 0.81 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 34 H 0.09 1.66 8.08 -2.39 -0.02 1.64 16 35 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.41 10.41 6.52 -92.71 -0.60 9.80 16 38 H 0.14 3.63 6.42 -2.91 -0.02 3.61 16 39 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 40 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.10 4.66 5.01 -2.91 -0.01 4.64 16 42 H 0.29 15.54 8.29 -92.71 -0.77 14.77 16 43 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 46 H 0.08 0.97 5.95 -2.38 -0.01 0.95 16 Total: -1.00 -77.17 372.38 3.94 -73.23 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.32 Total: 31.96 kcal Atomic # 6 Polarization: -44.08 SS G_CDS: 4.25 Total: -39.83 kcal Atomic # 7 Polarization: -75.11 SS G_CDS: -2.26 Total: -77.37 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.06 Total: -34.05 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.68 Total: 46.06 kcal Total: -77.17 3.94 -73.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.370 kcal (2) G-P(sol) polarization free energy of solvation -77.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds