Wall clock time and date at job start Tue Mar 31 2020 14:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46916 * 2 1 4 4 C 1.38238 * 119.99662 * 90.00526 * 3 2 1 5 5 C 1.38237 * 120.00116 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99687 * 359.95700 * 5 4 3 7 7 C 1.50704 * 119.99696 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47193 * 20.00357 * 7 6 5 9 9 C 1.52998 * 109.47155 * 260.00322 * 7 6 5 10 10 N 1.46500 * 109.47048 * 140.00255 * 7 6 5 11 11 C 1.34775 * 119.99854 * 205.00397 * 10 7 6 12 12 O 1.21586 * 120.00118 * 359.97438 * 11 10 7 13 13 C 1.47646 * 119.99967 * 180.02562 * 11 10 7 14 14 C 1.40006 * 119.89468 * 179.97438 * 13 11 10 15 15 C 1.36322 * 120.10589 * 180.23251 * 14 13 11 16 16 C 1.40890 * 119.89071 * 359.51190 * 15 14 13 17 17 C 1.41102 * 120.10418 * 180.23449 * 16 15 14 18 18 H 1.08000 * 119.99913 * 204.79089 * 17 16 15 19 19 C 1.40225 * 120.00169 * 24.78699 * 17 16 15 20 20 N 1.30645 * 119.99670 * 17.74323 * 19 17 16 21 21 Si 1.86801 * 120.00217 * 197.74152 * 19 17 16 22 22 H 1.48498 * 109.47059 * 89.99828 * 21 19 17 23 23 H 1.48498 * 109.47335 * 210.00155 * 21 19 17 24 24 H 1.48503 * 109.47224 * 329.99927 * 21 19 17 25 25 C 1.40893 * 119.78869 * 0.48631 * 16 15 14 26 26 C 1.36308 * 119.89538 * 359.74946 * 25 16 15 27 27 C 1.38227 * 120.00362 * 0.27337 * 6 5 4 28 28 C 1.38231 * 120.00414 * 269.97978 * 3 2 1 29 29 H 1.08998 * 109.46848 * 299.99709 * 1 2 3 30 30 H 1.09005 * 109.47380 * 59.99236 * 1 2 3 31 31 H 1.08994 * 109.47285 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46883 * 240.01078 * 2 1 3 33 33 H 1.08994 * 109.47608 * 120.00333 * 2 1 3 34 34 H 1.08000 * 119.99820 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.99904 * 179.97438 * 5 4 3 36 36 H 1.09007 * 109.46886 * 300.00060 * 9 7 6 37 37 H 1.09003 * 109.47527 * 59.99779 * 9 7 6 38 38 H 1.08994 * 109.47142 * 180.02562 * 9 7 6 39 39 H 0.96996 * 119.99921 * 24.99766 * 10 7 6 40 40 H 1.07997 * 119.94941 * 359.94993 * 14 13 11 41 41 H 1.08004 * 120.05393 * 179.74718 * 15 14 13 42 42 H 0.97006 * 119.99884 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.04706 * 179.72971 * 25 16 15 44 44 H 1.08001 * 119.94520 * 180.02562 * 26 25 16 45 45 H 1.07999 * 120.00237 * 179.72470 * 27 6 5 46 46 H 1.07997 * 120.00137 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3756 1.1973 6 6 2.9556 4.0268 0.0002 7 6 3.4579 5.4477 0.0003 8 1 3.9094 5.6734 0.9664 9 6 2.2888 6.4019 -0.2516 10 7 4.4588 5.6119 -1.0568 11 6 5.3936 6.5774 -0.9555 12 8 5.4060 7.3125 0.0129 13 6 6.4020 6.7433 -2.0212 14 6 7.3718 7.7474 -1.9140 15 6 8.3020 7.9074 -2.8976 16 6 8.2927 7.0537 -4.0184 17 6 9.2564 7.2121 -5.0368 18 1 9.0438 6.8712 -6.0392 19 6 10.4903 7.8123 -4.7472 20 7 10.8947 7.9094 -3.5088 21 14 11.5555 8.4728 -6.1323 22 1 11.2067 9.8929 -6.3909 23 1 12.9860 8.3769 -5.7454 24 1 11.3207 7.6736 -7.3617 25 6 7.3147 6.0447 -4.1216 26 6 6.3858 5.8955 -3.1354 27 6 2.7206 3.3769 -1.1969 28 6 2.2631 2.0724 -1.1971 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.0824 1.5633 2.1325 35 1 2.9036 3.8847 2.1327 36 1 1.8373 6.1762 -1.2177 37 1 1.5440 6.2798 0.5349 38 1 2.6522 7.4295 -0.2520 39 1 4.4488 5.0256 -1.8294 40 1 7.3802 8.3991 -1.0529 41 1 9.0472 8.6849 -2.8161 42 1 11.7485 8.3242 -3.3085 43 1 7.3010 5.3908 -4.9811 44 1 5.6360 5.1221 -3.2135 45 1 2.8974 3.8873 -2.1322 46 1 2.0830 1.5634 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611142667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:09 Heat of formation + Delta-G solvation = -30.128475 kcal Electronic energy + Delta-G solvation = -25615.126258 eV Core-core repulsion = 22046.441459 eV Total energy + Delta-G solvation = -3568.684799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21609 -40.23743 -38.93286 -36.89269 -35.70013 -34.50581 -32.55092 -31.86992 -31.68813 -30.92532 -29.40489 -27.69637 -25.41880 -24.11309 -23.73305 -23.09144 -22.44248 -21.34911 -21.02390 -19.36535 -18.84680 -17.50214 -17.11420 -16.74287 -16.20825 -16.03004 -15.78349 -15.72717 -15.36099 -15.05633 -14.70638 -14.59049 -14.51322 -14.36029 -14.10893 -13.99537 -13.80786 -13.55873 -13.36517 -13.21329 -13.04227 -12.83209 -12.64475 -12.48525 -12.37510 -12.29809 -12.05227 -11.76589 -11.66678 -11.61069 -11.36177 -11.13780 -10.73719 -10.13872 -9.82988 -9.57733 -9.47320 -9.41536 -8.79487 -6.48784 0.34944 0.43966 0.49244 1.14591 1.37687 1.43175 1.53167 2.11559 2.16988 2.34884 2.78272 2.84736 3.57617 3.69268 3.88030 3.95325 4.11332 4.17162 4.23059 4.31324 4.36766 4.40624 4.41163 4.53490 4.58421 4.65179 4.72939 4.74028 4.91451 4.96953 5.01664 5.06095 5.09114 5.12675 5.18626 5.21062 5.22991 5.25430 5.41249 5.47386 5.51217 5.58172 5.73200 5.73288 5.78018 5.95810 6.01247 6.09346 6.19551 6.55446 6.70387 6.76153 6.88941 7.43607 8.15664 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002322 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.115862 B =12057.850589 C =12898.691244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.087 4.087 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.103 4.103 7 C 0.185 3.815 8 H 0.072 0.928 9 C -0.149 4.149 10 N -0.718 5.718 11 C 0.573 3.427 12 O -0.605 6.605 13 C -0.293 4.293 14 C -0.050 4.050 15 C -0.203 4.203 16 C 0.100 3.900 17 C -0.470 4.470 18 H 0.093 0.907 19 C 0.032 3.968 20 N -0.803 5.803 21 Si 0.990 3.010 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.250 1.250 25 C -0.245 4.245 26 C -0.038 4.038 27 C -0.118 4.118 28 C -0.119 4.119 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.041 0.959 39 H 0.405 0.595 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.295 0.705 43 H 0.117 0.883 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.224 -13.419 3.264 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.137 4.137 5 C -0.134 4.134 6 C -0.104 4.104 7 C 0.080 3.920 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.371 5.371 11 C 0.366 3.634 12 O -0.489 6.489 13 C -0.298 4.298 14 C -0.069 4.069 15 C -0.222 4.222 16 C 0.097 3.903 17 C -0.497 4.497 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.427 5.427 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.174 1.174 25 C -0.264 4.264 26 C -0.056 4.056 27 C -0.137 4.137 28 C -0.137 4.137 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.244 0.756 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.135 0.865 44 H 0.148 0.852 45 H 0.145 0.855 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.045 -12.866 4.107 20.972 hybrid contribution 0.889 0.539 -0.500 1.153 sum -15.157 -12.327 3.607 19.867 Atomic orbital electron populations 1.21729 0.94098 1.02393 1.01934 1.20594 0.96600 0.91302 1.03666 1.20235 0.98225 0.97274 0.92966 1.21238 0.99550 0.94269 0.98655 1.21162 0.99464 0.95385 0.97418 1.19849 1.01291 0.94519 0.94697 1.19720 0.88484 0.92190 0.91575 0.90945 1.22091 0.97267 0.98267 1.03110 1.45915 1.30892 1.35354 1.24926 1.18415 0.80440 0.79240 0.85258 1.90612 1.76059 1.47285 1.34977 1.19174 1.03757 1.07165 0.99692 1.20547 0.93586 0.95953 0.96829 1.20945 1.01050 1.02732 0.97494 1.18159 0.91393 0.88797 0.91978 1.20150 0.98573 1.33553 0.97428 0.88923 1.27043 0.99622 0.92834 0.99145 1.69807 1.20461 1.30158 1.22269 0.85074 0.76577 0.79401 0.78001 1.18663 1.19194 1.17370 1.20937 1.01446 1.02161 1.01887 1.20663 0.96728 0.96123 0.92121 1.21077 0.99561 0.95557 0.97458 1.21246 0.99451 0.94299 0.98688 0.92842 0.92906 0.91184 0.90307 0.90251 0.84188 0.85287 0.91384 0.89991 0.93941 0.75641 0.89076 0.87797 0.89372 0.86526 0.85176 0.85456 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.08 -1.00 6.06 29.85 0.18 -0.81 16 3 C -0.09 -1.46 5.13 -19.86 -0.10 -1.56 16 4 C -0.12 -2.10 9.70 22.27 0.22 -1.89 16 5 C -0.12 -2.43 9.67 22.27 0.22 -2.21 16 6 C -0.10 -2.41 4.95 -19.87 -0.10 -2.51 16 7 C 0.18 5.23 2.77 44.25 0.12 5.35 16 8 H 0.07 2.34 7.44 -2.39 -0.02 2.32 16 9 C -0.15 -3.81 9.46 71.98 0.68 -3.13 16 10 N -0.72 -23.51 4.97 -449.16 -2.23 -25.75 16 11 C 0.57 24.66 7.73 86.73 0.67 25.33 16 12 O -0.60 -29.80 15.98 -3.99 -0.06 -29.87 16 13 C -0.29 -13.63 5.89 -19.93 -0.12 -13.75 16 14 C -0.05 -2.56 9.52 22.25 0.21 -2.35 16 15 C -0.20 -10.90 8.63 22.47 0.19 -10.71 16 16 C 0.10 5.21 5.57 -21.28 -0.12 5.09 16 17 C -0.47 -23.67 9.04 23.46 0.21 -23.45 16 18 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 19 C 0.03 1.53 5.14 85.35 0.44 1.97 16 20 N -0.80 -40.50 10.95 21.87 0.24 -40.26 16 21 Si 0.99 35.51 29.60 68.60 2.03 37.54 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 23 H -0.27 -9.17 7.11 99.48 0.71 -8.47 16 24 H -0.25 -8.55 7.11 99.48 0.71 -7.85 16 25 C -0.25 -11.23 9.73 22.47 0.22 -11.01 16 26 C -0.04 -1.57 9.47 22.25 0.21 -1.36 16 27 C -0.12 -2.46 9.05 22.27 0.20 -2.26 16 28 C -0.12 -2.12 9.70 22.27 0.22 -1.91 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 34 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.13 2.45 8.04 -2.91 -0.02 2.42 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.41 11.41 4.89 -92.71 -0.45 10.96 16 40 H 0.09 4.73 7.63 -2.91 -0.02 4.70 16 41 H 0.10 5.80 6.16 -2.91 -0.02 5.78 16 42 H 0.30 13.35 8.29 -92.70 -0.77 12.58 16 43 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.13 4.20 6.37 -2.91 -0.02 4.18 16 45 H 0.13 2.41 6.93 -2.91 -0.02 2.39 16 46 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -63.95 382.83 4.77 -59.18 By element: Atomic # 1 Polarization: 40.56 SS G_CDS: 0.53 Total: 41.09 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 4.27 Total: -41.93 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -1.99 Total: -66.01 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.06 Total: -29.87 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -63.95 4.77 -59.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611142667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.050 kcal (2) G-P(sol) polarization free energy of solvation -63.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds