Wall clock time and date at job start Tue Mar 31 2020 14:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 C 1.50704 * 109.46826 * 119.99674 * 2 1 3 5 5 C 1.38299 * 119.96370 * 299.98136 * 4 2 1 6 6 C 1.38270 * 120.13929 * 180.02562 * 5 4 2 7 7 C 1.38132 * 120.06603 * 359.71573 * 6 5 4 8 8 C 1.38850 * 119.93058 * 0.55611 * 7 6 5 9 9 N 1.39932 * 120.06976 * 179.71901 * 8 7 6 10 10 C 1.34774 * 119.99892 * 214.84638 * 9 8 7 11 11 O 1.21283 * 120.00440 * 355.51565 * 10 9 8 12 12 C 1.50700 * 119.99731 * 175.52046 * 10 9 8 13 13 C 1.50699 * 109.47244 * 180.02562 * 12 10 9 14 14 C 1.37647 * 120.12419 * 265.30439 * 13 12 10 15 15 C 1.38611 * 120.24502 * 180.31933 * 14 13 12 16 16 C 1.38659 * 120.50127 * 359.66508 * 15 14 13 17 17 C 1.37591 * 120.25182 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.13007 * 84.99272 * 13 12 10 19 19 C 1.41392 * 120.24700 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99176 * 334.56024 * 19 18 13 21 21 C 1.39936 * 120.00448 * 154.56196 * 19 18 13 22 22 N 1.30829 * 120.00266 * 334.85717 * 21 19 18 23 23 Si 1.86802 * 120.00095 * 154.85152 * 21 19 18 24 24 H 1.48509 * 109.47019 * 180.02562 * 23 21 19 25 25 H 1.48500 * 109.47192 * 300.00342 * 23 21 19 26 26 H 1.48504 * 109.46891 * 60.00373 * 23 21 19 27 27 C 1.38089 * 119.95996 * 119.99784 * 4 2 1 28 28 H 1.08993 * 109.46981 * 300.00263 * 1 2 3 29 29 H 1.09006 * 109.46694 * 60.00449 * 1 2 3 30 30 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46981 * 239.99737 * 2 1 3 32 32 H 1.08996 * 109.47248 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46866 * 299.99831 * 3 2 1 34 34 H 1.09000 * 109.46870 * 59.99267 * 3 2 1 35 35 H 1.07996 * 119.93319 * 0.03729 * 5 4 2 36 36 H 1.07997 * 119.96460 * 180.02562 * 6 5 4 37 37 H 1.08005 * 120.03158 * 180.27538 * 7 6 5 38 38 H 0.96999 * 119.99539 * 34.84595 * 9 8 7 39 39 H 1.08997 * 109.47476 * 59.99784 * 12 10 9 40 40 H 1.09004 * 109.47085 * 299.99771 * 12 10 9 41 41 H 1.08002 * 119.87677 * 0.02562 * 14 13 12 42 42 H 1.08004 * 119.74827 * 179.69585 * 15 14 13 43 43 H 1.08001 * 119.87138 * 180.02562 * 16 15 14 44 44 H 1.08002 * 120.13271 * 180.02562 * 17 16 15 45 45 H 0.97000 * 119.99175 * 354.69524 * 22 21 19 46 46 H 1.07993 * 120.04250 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6981 -0.2369 2.4862 6 6 2.1573 -0.8855 3.6177 7 6 2.9470 -2.0124 3.4969 8 6 3.2891 -2.4869 2.2376 9 7 4.0937 -3.6248 2.1119 10 6 4.9796 -3.7152 1.1002 11 8 5.0231 -2.8486 0.2528 12 6 5.9162 -4.8932 1.0219 13 6 6.7975 -4.7544 -0.1927 14 6 6.4466 -5.3670 -1.3744 15 6 7.2587 -5.2465 -2.4912 16 6 8.4281 -4.5036 -2.4342 17 6 8.7953 -3.8775 -1.2654 18 6 7.9786 -3.9929 -0.1250 19 6 8.3455 -3.3534 1.0814 20 1 7.5879 -3.0882 1.8040 21 6 9.6901 -3.0639 1.3392 22 7 10.6323 -3.7710 0.7700 23 14 10.1399 -1.6678 2.4959 24 1 11.6180 -1.5672 2.5991 25 1 9.5931 -0.3920 1.9681 26 1 9.5664 -1.9340 3.8396 27 6 2.8261 -1.8331 1.1030 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.0768 0.6411 2.5833 36 1 1.8942 -0.5136 4.5969 37 1 3.3018 -2.5212 4.3811 38 1 4.0139 -4.3484 2.7528 39 1 5.3371 -5.8136 0.9478 40 1 6.5358 -4.9250 1.9181 41 1 5.5376 -5.9475 -1.4302 42 1 6.9781 -5.7345 -3.4130 43 1 9.0530 -4.4161 -3.3107 44 1 9.7064 -3.2990 -1.2233 45 1 10.4003 -4.5433 0.2309 46 1 3.0874 -2.2019 0.1222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776747199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:00 Heat of formation + Delta-G solvation = -30.456472 kcal Electronic energy + Delta-G solvation = -26689.834602 eV Core-core repulsion = 23121.135579 eV Total energy + Delta-G solvation = -3568.699022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59976 -40.14414 -39.23546 -36.80040 -35.76624 -35.03953 -33.62908 -31.26873 -31.11591 -30.31341 -28.35680 -28.00576 -26.82270 -24.22538 -24.05179 -22.84302 -22.32831 -21.17376 -20.89575 -19.64321 -18.32908 -17.82009 -17.17059 -16.88893 -16.66561 -16.30258 -16.00010 -15.65750 -15.52821 -15.13173 -14.93892 -14.57238 -14.47570 -14.34060 -14.20815 -13.89505 -13.60068 -13.42357 -13.03206 -13.01173 -12.94978 -12.82987 -12.72681 -12.62159 -12.27230 -12.12644 -12.00532 -11.74835 -11.63739 -11.51750 -11.24522 -11.18520 -10.86501 -10.75693 -9.66104 -9.47413 -9.45148 -9.08850 -9.03987 -6.42317 0.35182 0.49005 0.87782 0.96973 1.44583 1.59711 1.69139 1.74004 2.18139 2.28611 2.69802 2.88327 3.53268 3.69894 3.89793 3.99526 4.16277 4.25880 4.27248 4.29147 4.31463 4.41301 4.45707 4.52107 4.54191 4.63826 4.67408 4.73214 4.79081 4.91011 4.95615 4.97396 5.05341 5.05900 5.22360 5.28387 5.30091 5.36987 5.43195 5.46406 5.47627 5.60482 5.77316 5.77664 5.82168 5.96077 6.03260 6.15343 6.26995 6.42553 6.51319 6.83778 6.99645 7.25978 8.06643 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011654 B = 0.003822 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.114795 B = 7324.560668 C = 8203.141367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.067 4.067 5 C -0.136 4.136 6 C -0.096 4.096 7 C -0.156 4.156 8 C 0.133 3.867 9 N -0.669 5.669 10 C 0.515 3.485 11 O -0.550 6.550 12 C -0.066 4.066 13 C -0.192 4.192 14 C -0.079 4.079 15 C -0.251 4.251 16 C -0.096 4.096 17 C -0.246 4.246 18 C 0.088 3.912 19 C -0.541 4.541 20 H 0.066 0.934 21 C 0.006 3.994 22 N -0.819 5.819 23 Si 1.105 2.895 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.252 1.252 27 C -0.150 4.150 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.425 0.575 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.285 0.715 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 4.052 7.452 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 C -0.196 4.196 4 C -0.068 4.068 5 C -0.154 4.154 6 C -0.114 4.114 7 C -0.176 4.176 8 C 0.038 3.962 9 N -0.316 5.316 10 C 0.304 3.696 11 O -0.426 6.426 12 C -0.105 4.105 13 C -0.194 4.194 14 C -0.097 4.097 15 C -0.269 4.269 16 C -0.114 4.114 17 C -0.265 4.265 18 C 0.085 3.915 19 C -0.569 4.569 20 H 0.085 0.915 21 C -0.210 4.210 22 N -0.442 5.442 23 Si 0.923 3.077 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.176 1.176 27 C -0.171 4.171 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.164 0.836 38 H 0.264 0.736 39 H 0.137 0.863 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.911 5.391 7.444 19.247 hybrid contribution -0.626 -1.432 -1.031 1.872 sum -17.537 3.959 6.413 19.088 Atomic orbital electron populations 1.21791 0.92279 1.01940 1.03104 1.20168 0.97422 0.96238 0.94165 1.21821 1.00075 0.94567 1.03183 1.19958 0.96174 0.94340 0.96314 1.21208 1.01830 1.01277 0.91114 1.21310 0.96167 0.94047 0.99893 1.21194 1.02389 0.98877 0.95175 1.18073 0.93559 0.89927 0.94599 1.43524 1.37320 1.19987 1.30803 1.21396 0.79902 0.88069 0.80205 1.90673 1.69689 1.42029 1.40212 1.20275 0.95492 0.95867 0.98915 1.19461 0.99391 1.05024 0.95484 1.20808 0.97983 0.98311 0.92563 1.20711 0.98170 1.08951 0.99117 1.20902 0.96847 0.97147 0.96510 1.21155 1.03082 1.07728 0.94546 1.17758 0.91823 0.89170 0.92751 1.20538 0.95694 1.36726 1.03959 0.91539 1.28168 0.92504 1.01290 0.99072 1.70559 1.37203 1.13161 1.23314 0.83161 0.77158 0.72487 0.74910 1.19169 1.20360 1.17600 1.21161 0.99360 0.98543 0.98016 0.90929 0.91216 0.93238 0.92740 0.94763 0.91010 0.90803 0.83610 0.82434 0.83566 0.73646 0.86320 0.88247 0.86256 0.86333 0.87278 0.89870 0.90278 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.01 71.98 0.65 -1.66 16 2 C -0.06 -1.44 3.09 -11.54 -0.04 -1.48 16 3 C -0.14 -2.92 9.01 71.98 0.65 -2.27 16 4 C -0.07 -1.82 4.78 -19.88 -0.10 -1.91 16 5 C -0.14 -2.89 8.71 22.29 0.19 -2.70 16 6 C -0.10 -1.90 10.04 22.25 0.22 -1.68 16 7 C -0.16 -3.65 9.97 22.39 0.22 -3.43 16 8 C 0.13 4.04 6.30 38.15 0.24 4.28 16 9 N -0.67 -19.95 5.34 -303.51 -1.62 -21.57 16 10 C 0.51 20.13 7.31 87.66 0.64 20.77 16 11 O -0.55 -27.00 13.48 -3.04 -0.04 -27.04 16 12 C -0.07 -2.49 5.18 29.10 0.15 -2.34 16 13 C -0.19 -9.14 4.43 -19.40 -0.09 -9.23 16 14 C -0.08 -3.48 9.66 22.22 0.21 -3.26 16 15 C -0.25 -11.21 10.05 22.46 0.23 -10.99 16 16 C -0.10 -4.65 10.02 22.22 0.22 -4.43 16 17 C -0.25 -13.49 7.93 22.73 0.18 -13.31 16 18 C 0.09 4.79 5.31 -21.29 -0.11 4.67 16 19 C -0.54 -29.56 8.09 23.46 0.19 -29.37 16 20 H 0.07 3.58 6.72 -2.91 -0.02 3.56 16 21 C 0.01 0.32 4.95 85.25 0.42 0.74 16 22 N -0.82 -45.25 12.32 21.82 0.27 -44.98 16 23 Si 1.10 45.46 30.00 68.60 2.06 47.51 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 25 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 27 C -0.15 -5.07 8.32 22.39 0.19 -4.88 16 28 H 0.07 1.02 7.38 -2.39 -0.02 1.00 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.05 1.50 7.87 -2.39 -0.02 1.48 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.26 7.38 -2.39 -0.02 1.24 16 35 H 0.15 2.24 7.09 -2.91 -0.02 2.22 16 36 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 37 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.43 8.96 8.82 -92.71 -0.82 8.14 16 39 H 0.12 3.45 8.06 -2.39 -0.02 3.43 16 40 H 0.10 3.75 7.05 -2.38 -0.02 3.73 16 41 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 44 H 0.08 4.81 6.45 -2.91 -0.02 4.79 16 45 H 0.28 16.31 6.61 -92.71 -0.61 15.70 16 46 H 0.10 4.16 6.12 -2.91 -0.02 4.14 16 Total: -1.00 -71.60 377.03 5.27 -66.33 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: 0.33 Total: 42.23 kcal Atomic # 6 Polarization: -66.76 SS G_CDS: 4.28 Total: -62.48 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -1.35 Total: -66.55 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.06 Total: 47.51 kcal Total: -71.60 5.27 -66.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776747199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.870 kcal (2) G-P(sol) polarization free energy of solvation -71.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds