Wall clock time and date at job start Tue Mar 31 2020 13:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38341 * 119.93851 * 2 1 4 4 C 1.38304 * 120.24085 * 179.97438 * 3 2 1 5 5 C 1.38035 * 120.12284 * 359.76676 * 4 3 2 6 6 C 1.39317 * 119.87684 * 0.48565 * 5 4 3 7 7 C 1.48397 * 120.12126 * 179.76356 * 6 5 4 8 8 C 1.39464 * 120.05122 * 179.74863 * 7 6 5 9 9 C 1.38120 * 120.17145 * 179.97438 * 8 7 6 10 10 C 1.38059 * 120.27074 * 359.72093 * 9 8 7 11 11 C 1.39609 * 120.10119 * 0.55838 * 10 9 8 12 12 C 1.47864 * 120.09028 * 179.71782 * 11 10 9 13 13 O 1.21551 * 120.00374 * 140.06156 * 12 11 10 14 14 N 1.34778 * 119.99975 * 320.06935 * 12 11 10 15 15 C 1.46501 * 119.99675 * 4.45255 * 14 12 11 16 16 C 1.46501 * 120.00271 * 184.45335 * 14 12 11 17 17 H 1.09000 * 109.47062 * 0.02562 * 16 14 12 18 18 C 1.52990 * 109.47134 * 239.99666 * 16 14 12 19 19 C 1.50707 * 109.47003 * 119.99545 * 16 14 12 20 20 H 1.08003 * 119.99555 * 0.02562 * 19 16 14 21 21 C 1.37876 * 119.99900 * 179.97438 * 19 16 14 22 22 N 1.31520 * 119.99799 * 0.02562 * 21 19 16 23 23 Si 1.86796 * 119.99888 * 180.02562 * 21 19 16 24 24 H 1.48506 * 109.47270 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47090 * 120.00207 * 23 21 19 26 26 H 1.48499 * 109.46911 * 240.00181 * 23 21 19 27 27 C 1.39062 * 120.05356 * 359.72819 * 7 6 5 28 28 C 1.37996 * 119.94041 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47668 * 270.02216 * 1 2 3 30 30 H 1.09006 * 109.47123 * 30.02576 * 1 2 3 31 31 H 1.09003 * 109.47243 * 150.01862 * 1 2 3 32 32 H 1.08002 * 119.88050 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.93599 * 180.02562 * 4 3 2 34 34 H 1.07996 * 120.06681 * 180.25219 * 5 4 3 35 35 H 1.07999 * 119.91369 * 0.02562 * 8 7 6 36 36 H 1.07999 * 119.86358 * 180.02562 * 9 8 7 37 37 H 1.08003 * 119.95039 * 180.27527 * 10 9 8 38 38 H 1.08997 * 109.47606 * 91.81943 * 15 14 12 39 39 H 1.08997 * 109.47328 * 331.81610 * 15 14 12 40 40 H 1.09005 * 109.47024 * 211.82295 * 15 14 12 41 41 H 1.09000 * 109.47487 * 60.00283 * 18 16 14 42 42 H 1.08999 * 109.47033 * 179.97438 * 18 16 14 43 43 H 1.09000 * 109.47697 * 300.00285 * 18 16 14 44 44 H 0.96996 * 119.99559 * 179.97438 * 22 21 19 45 45 H 1.08005 * 120.13079 * 0.04525 * 27 7 6 46 46 H 1.07997 * 120.06024 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2061 0.0005 5 6 4.2794 0.0158 0.0059 6 6 3.5893 -1.1943 0.0006 7 6 4.3353 -2.4771 0.0011 8 6 3.6429 -3.6877 0.0010 9 6 4.3348 -4.8832 0.0009 10 6 5.7154 -4.8882 -0.0049 11 6 6.4200 -3.6830 0.0010 12 6 7.8986 -3.6887 0.0010 13 8 8.5096 -2.8807 -0.6708 14 7 8.5690 -4.5900 0.7458 15 6 7.8358 -5.6254 1.4783 16 6 10.0310 -4.5343 0.8229 17 1 10.3954 -3.7041 0.2179 18 6 10.6196 -5.8454 0.2983 19 6 10.4511 -4.3329 2.2562 20 1 9.7038 -4.2547 3.0320 21 6 11.7894 -4.2496 2.5770 22 7 12.6993 -4.3454 1.6323 23 14 12.3101 -4.0007 4.3536 24 1 11.1042 -3.9254 5.2170 25 1 13.1571 -5.1414 4.7856 26 1 13.0829 -2.7381 4.4706 27 6 5.7259 -2.4740 0.0011 28 6 2.1957 -1.1958 0.0005 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5136 32 1 1.6544 2.1324 -0.0004 33 1 4.1145 2.1449 0.0010 34 1 5.3594 0.0226 0.0105 35 1 2.5629 -3.6905 0.0002 36 1 3.7936 -5.8177 0.0005 37 1 6.2512 -5.8260 -0.0095 38 1 7.7487 -6.5171 0.8575 39 1 6.8404 -5.2579 1.7280 40 1 8.3726 -5.8714 2.3945 41 1 10.3158 -5.9910 -0.7383 42 1 11.7073 -5.8038 0.3553 43 1 10.2552 -6.6753 0.9037 44 1 13.6408 -4.2864 1.8580 45 1 6.2660 -1.5387 0.0015 46 1 1.6557 -2.1311 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906567149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:34 Heat of formation + Delta-G solvation = 16.944116 kcal Electronic energy + Delta-G solvation = -26172.019304 eV Core-core repulsion = 22605.375726 eV Total energy + Delta-G solvation = -3566.643578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.26764 -39.31642 -37.79908 -35.39061 -33.69488 -32.91767 -32.20108 -31.06659 -29.72489 -28.63407 -27.13945 -26.28517 -25.24199 -23.96818 -23.45161 -22.16262 -20.70516 -20.53157 -18.70953 -17.30619 -16.74415 -16.21623 -15.96945 -15.76690 -15.45738 -14.97446 -14.66396 -14.35616 -14.09138 -14.04894 -13.83197 -13.47814 -13.28560 -13.05435 -12.89055 -12.52461 -12.48429 -12.41286 -12.07161 -11.87909 -11.61936 -11.58855 -11.31451 -11.11884 -10.98764 -10.85569 -10.81673 -10.69879 -10.25962 -10.18733 -9.69635 -9.21034 -9.09697 -8.90644 -8.82685 -8.44531 -8.05979 -7.62406 -6.08964 -4.17074 0.58596 1.19797 1.23683 1.79756 3.24342 3.25264 3.33253 3.36333 3.62970 3.86925 4.11522 4.37463 4.45516 4.55458 4.66806 4.83732 4.92643 4.95321 5.09191 5.16420 5.22070 5.22670 5.23946 5.31874 5.37683 5.53786 5.57305 5.71312 5.77075 5.84031 5.91132 5.97039 6.04856 6.16079 6.27840 6.36387 6.37769 6.41171 6.47605 6.62991 6.74665 6.80352 6.83907 6.90932 7.05023 7.39509 7.51503 7.69859 8.00040 8.17152 8.48031 8.80094 8.99709 9.49434 10.96446 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017684 B = 0.002764 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.993800 B =10126.456661 C =10856.976819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.034 4.034 7 C -0.059 4.059 8 C -0.098 4.098 9 C -0.127 4.127 10 C -0.091 4.091 11 C -0.111 4.111 12 C 0.544 3.456 13 O -0.547 6.547 14 N -0.583 5.583 15 C 0.075 3.925 16 C 0.257 3.743 17 H 0.064 0.936 18 C -0.146 4.146 19 C -0.526 4.526 20 H 0.061 0.939 21 C 0.064 3.936 22 N -0.887 5.887 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.058 4.058 28 C -0.113 4.113 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.137 0.863 38 H 0.046 0.954 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.012 0.988 42 H 0.094 0.906 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.133 0.867 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.256 3.034 -2.428 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.130 4.130 5 C -0.133 4.133 6 C -0.034 4.034 7 C -0.059 4.059 8 C -0.116 4.116 9 C -0.145 4.145 10 C -0.110 4.110 11 C -0.114 4.114 12 C 0.330 3.670 13 O -0.426 6.426 14 N -0.313 5.313 15 C -0.069 4.069 16 C 0.157 3.843 17 H 0.082 0.918 18 C -0.204 4.204 19 C -0.565 4.565 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.525 5.525 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.077 4.077 28 C -0.131 4.131 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.031 0.969 42 H 0.112 0.888 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.151 0.849 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.682 3.436 -2.786 23.109 hybrid contribution 0.411 0.017 1.045 1.123 sum -22.271 3.453 -1.741 22.604 Atomic orbital electron populations 1.20786 0.91171 1.02733 1.02312 1.19823 0.96015 0.93032 0.99926 1.21073 0.94288 0.97420 1.01407 1.21097 0.94197 0.98039 0.99658 1.21353 1.00487 0.91703 0.99773 1.18755 0.92857 0.92088 0.99655 1.18650 0.92587 0.92223 1.02424 1.21280 0.99732 0.91649 0.98919 1.20998 0.93937 0.97955 1.01563 1.21723 0.94361 0.97948 0.96925 1.20155 0.94434 0.93937 1.02853 1.18266 0.86237 0.81804 0.80666 1.90737 1.69293 1.39848 1.42769 1.48176 1.09682 1.28533 1.44915 1.21962 0.96640 0.90604 0.97667 1.18996 0.72089 0.95906 0.97299 0.91805 1.22075 1.04819 0.97660 0.95883 1.21351 0.92061 1.50557 0.92503 0.92129 1.24896 0.96396 0.94874 0.97625 1.69895 1.00950 1.49662 1.31989 0.86432 0.78611 0.77827 0.84487 1.19785 1.20914 1.20880 1.21277 0.92721 0.97845 0.95847 1.21064 0.93050 0.97732 1.01285 0.91188 0.91575 0.91561 0.86186 0.85764 0.85353 0.85737 0.85411 0.84577 0.93594 0.91814 0.90162 0.96938 0.88751 0.95115 0.92704 0.84911 0.85785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 2 C -0.09 -0.83 5.87 -104.67 -0.61 -1.44 16 3 C -0.12 -1.17 9.69 -39.52 -0.38 -1.55 16 4 C -0.11 -1.16 10.03 -39.63 -0.40 -1.56 16 5 C -0.12 -1.40 9.43 -39.25 -0.37 -1.77 16 6 C -0.03 -0.41 5.88 -104.90 -0.62 -1.03 16 7 C -0.06 -0.79 5.87 -104.95 -0.62 -1.40 16 8 C -0.10 -1.11 9.42 -39.17 -0.37 -1.47 16 9 C -0.13 -1.41 10.02 -39.69 -0.40 -1.81 16 10 C -0.09 -1.25 7.46 -39.14 -0.29 -1.54 16 11 C -0.11 -1.90 5.21 -105.01 -0.55 -2.44 16 12 C 0.54 11.83 7.34 -12.32 -0.09 11.74 16 13 O -0.55 -14.00 16.26 5.32 0.09 -13.91 16 14 N -0.58 -12.72 2.75 -176.37 -0.49 -13.20 16 15 C 0.07 1.28 7.90 59.85 0.47 1.75 16 16 C 0.26 6.63 2.63 -69.08 -0.18 6.44 16 17 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 18 C -0.15 -3.51 8.97 37.15 0.33 -3.18 16 19 C -0.53 -14.23 8.00 -34.44 -0.28 -14.51 16 20 H 0.06 1.62 7.30 -52.48 -0.38 1.24 16 21 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 22 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 23 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.06 -0.92 9.01 -38.84 -0.35 -1.27 16 28 C -0.11 -1.18 9.08 -39.25 -0.36 -1.54 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 34 H 0.13 1.56 6.20 -52.49 -0.33 1.23 16 35 H 0.12 1.06 6.19 -52.49 -0.32 0.74 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.14 1.72 5.56 -52.48 -0.29 1.43 16 38 H 0.05 0.68 7.28 -51.93 -0.38 0.30 16 39 H 0.06 0.95 5.37 -51.93 -0.28 0.67 16 40 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 43 H 0.03 0.67 7.67 -51.93 -0.40 0.28 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.13 2.15 6.20 -52.48 -0.33 1.82 16 46 H 0.12 1.04 6.20 -52.49 -0.33 0.72 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -32.07 371.20 -10.14 -42.21 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.16 Total: 3.06 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -4.79 Total: -15.31 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.14 Total: -37.67 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.07 -10.14 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906567149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.156 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds