Wall clock time and date at job start Tue Mar 31 2020 14:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 C 1.50705 * 109.47172 * 239.99752 * 2 1 3 5 5 C 1.38280 * 119.92432 * 59.72644 * 4 2 1 6 6 C 1.38120 * 120.06316 * 179.76465 * 5 4 2 7 7 C 1.38873 * 119.92973 * 0.52963 * 6 5 4 8 8 N 1.39922 * 120.06870 * 179.74843 * 7 6 5 9 9 C 1.34775 * 119.99907 * 213.43437 * 8 7 6 10 10 O 1.21293 * 119.99923 * 4.34404 * 9 8 7 11 11 C 1.50696 * 120.00149 * 184.34334 * 9 8 7 12 12 H 1.09001 * 109.47369 * 60.00297 * 11 9 8 13 13 C 1.50697 * 109.47402 * 300.00049 * 11 9 8 14 14 H 1.07999 * 120.00353 * 124.06457 * 13 11 9 15 15 C 1.37885 * 119.99457 * 304.06463 * 13 11 9 16 16 N 1.31512 * 120.00328 * 5.83110 * 15 13 11 17 17 Si 1.86808 * 119.99544 * 185.83180 * 15 13 11 18 18 H 1.48493 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46777 * 119.99983 * 17 15 13 20 20 H 1.48499 * 109.46501 * 239.99913 * 17 15 13 21 21 C 1.50702 * 109.47237 * 179.97438 * 11 9 8 22 22 C 1.38243 * 120.00119 * 312.32812 * 21 11 9 23 23 C 1.38236 * 119.99684 * 179.78573 * 22 21 11 24 24 C 1.38226 * 120.00278 * 0.44157 * 23 22 21 25 25 C 1.38240 * 119.99965 * 359.81183 * 24 23 22 26 26 C 1.38233 * 120.00246 * 359.97438 * 25 24 23 27 27 C 1.38877 * 119.85870 * 359.72355 * 7 6 5 28 28 C 1.38110 * 119.92922 * 0.02562 * 27 7 6 29 29 H 1.08998 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47241 * 300.00210 * 1 2 3 31 31 H 1.09007 * 109.46861 * 60.00560 * 1 2 3 32 32 H 1.09003 * 109.47156 * 119.99851 * 2 1 3 33 33 H 1.09003 * 109.46981 * 299.99958 * 3 2 1 34 34 H 1.08996 * 109.47231 * 59.99784 * 3 2 1 35 35 H 1.08995 * 109.47271 * 180.02562 * 3 2 1 36 36 H 1.07994 * 119.97285 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.03176 * 180.25554 * 6 5 4 38 38 H 0.97000 * 120.00382 * 33.43017 * 8 7 6 39 39 H 0.96998 * 120.00382 * 179.97438 * 16 15 13 40 40 H 1.07997 * 119.99381 * 359.97438 * 22 21 11 41 41 H 1.08001 * 119.99218 * 180.27057 * 23 22 21 42 42 H 1.08003 * 120.00552 * 179.83207 * 24 23 22 43 43 H 1.08002 * 120.00120 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.00084 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.03167 * 179.97438 * 27 7 6 46 46 H 1.07992 * 119.96287 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 6 1.6927 -0.2401 -2.4856 6 6 2.1555 -0.8861 -3.6153 7 6 2.9536 -2.0156 -3.4895 8 7 3.4197 -2.6755 -4.6320 9 6 3.5780 -4.0138 -4.6197 10 8 3.2424 -4.6553 -3.6465 11 6 4.1718 -4.7133 -5.8151 12 1 5.1761 -4.3312 -5.9979 13 6 3.3099 -4.4598 -7.0250 14 1 3.7419 -4.0252 -7.9143 15 6 1.9697 -4.7827 -6.9965 16 7 1.4184 -5.2041 -5.8793 17 14 0.9371 -4.6215 -8.5448 18 1 1.7878 -4.1299 -9.6582 19 1 0.3705 -5.9469 -8.9021 20 1 -0.1680 -3.6591 -8.3047 21 6 4.2397 -6.1949 -5.5477 22 6 4.7562 -6.6585 -4.3521 23 6 4.8144 -8.0174 -4.1051 24 6 4.3646 -8.9129 -5.0572 25 6 3.8530 -8.4494 -6.2549 26 6 3.7907 -7.0905 -6.5002 27 6 3.2886 -2.4885 -2.2274 28 6 2.8269 -1.8349 -1.1018 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.0677 0.6353 -2.5828 37 1 1.8933 -0.5159 -4.5954 38 1 3.6289 -2.1697 -5.4328 39 1 0.4755 -5.4310 -5.8592 40 1 5.1114 -5.9590 -3.6100 41 1 5.2139 -8.3794 -3.1693 42 1 4.4126 -9.9747 -4.8654 43 1 3.5011 -9.1491 -6.9986 44 1 3.3913 -6.7284 -7.4360 45 1 3.9088 -3.3669 -2.1264 46 1 3.0867 -2.2024 -0.1201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124499756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:13 Heat of formation + Delta-G solvation = -11.093276 kcal Electronic energy + Delta-G solvation = -27037.228550 eV Core-core repulsion = 23469.369179 eV Total energy + Delta-G solvation = -3567.859371 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34632 -40.16952 -39.05884 -36.60802 -35.54453 -34.41866 -32.70448 -31.79697 -31.40128 -29.93542 -28.62263 -27.91332 -25.92449 -24.37608 -23.44432 -22.97606 -22.28338 -21.18283 -20.62648 -18.76948 -18.47571 -17.43393 -17.06978 -16.81154 -16.65334 -16.06995 -15.67429 -15.38287 -15.25224 -15.01434 -14.69444 -14.46646 -14.36310 -14.14500 -14.04697 -13.88467 -13.81515 -13.50249 -13.27526 -13.06437 -12.87929 -12.80229 -12.52162 -12.34663 -12.23360 -11.99101 -11.78798 -11.68805 -11.49857 -11.47067 -11.20313 -10.82464 -10.70471 -10.19307 -9.75858 -9.42430 -9.15398 -8.71172 -8.13502 -6.31668 0.48286 0.56045 0.83143 0.88193 1.38147 1.44682 1.52845 2.23119 2.40996 2.60737 3.03243 3.16373 3.30226 3.85286 3.92594 4.14001 4.24968 4.30224 4.32891 4.39858 4.45130 4.51558 4.56141 4.61958 4.68580 4.71925 4.87040 4.91630 4.95310 5.01381 5.02476 5.05637 5.10611 5.14985 5.21447 5.38606 5.40995 5.45990 5.49218 5.52889 5.58630 5.67481 5.81448 5.84471 5.86713 5.90908 5.93236 6.30285 6.37193 6.48579 6.70117 6.94606 7.37877 7.79799 8.86722 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.003832 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.451250 B = 7305.297095 C = 8570.604428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.092 4.092 6 C -0.162 4.162 7 C 0.147 3.853 8 N -0.673 5.673 9 C 0.553 3.447 10 O -0.558 6.558 11 C 0.048 3.952 12 H 0.072 0.928 13 C -0.538 4.538 14 H 0.075 0.925 15 C 0.043 3.957 16 N -0.874 5.874 17 Si 0.939 3.061 18 H -0.256 1.256 19 H -0.286 1.286 20 H -0.289 1.289 21 C -0.039 4.039 22 C -0.118 4.118 23 C -0.144 4.144 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.094 4.094 27 C -0.147 4.147 28 C -0.105 4.105 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.145 0.855 37 H 0.130 0.870 38 H 0.414 0.586 39 H 0.256 0.744 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 8.743 6.948 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.068 4.068 3 C -0.196 4.196 4 C -0.107 4.107 5 C -0.111 4.111 6 C -0.182 4.182 7 C 0.051 3.949 8 N -0.317 5.317 9 C 0.344 3.656 10 O -0.435 6.435 11 C 0.027 3.973 12 H 0.090 0.910 13 C -0.576 4.576 14 H 0.093 0.907 15 C -0.162 4.162 16 N -0.508 5.508 17 Si 0.765 3.235 18 H -0.180 1.180 19 H -0.212 1.212 20 H -0.216 1.216 21 C -0.040 4.040 22 C -0.136 4.136 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.168 4.168 26 C -0.112 4.112 27 C -0.167 4.167 28 C -0.124 4.124 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.163 0.837 37 H 0.148 0.852 38 H 0.250 0.750 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.125 0.875 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.844 8.157 7.664 11.343 hybrid contribution -0.823 -0.103 -1.321 1.560 sum 1.020 8.055 6.343 10.303 Atomic orbital electron populations 1.21856 0.94076 1.01424 1.02645 1.20097 0.96088 0.96510 0.94150 1.21825 1.00926 0.94222 1.02619 1.20027 0.98966 0.96073 0.95666 1.20950 0.99200 0.99967 0.90953 1.21094 0.99233 0.97603 1.00304 1.18135 0.95664 0.93779 0.87298 1.43497 1.66211 1.07861 1.14121 1.21217 0.75654 0.80703 0.88047 1.90513 1.50190 1.65408 1.37396 1.18005 0.96824 0.89821 0.92683 0.91021 1.20952 0.93351 1.44564 0.98686 0.90679 1.25580 0.98884 0.93986 0.97750 1.70191 1.11986 1.42102 1.26556 0.85781 0.79035 0.77429 0.81208 1.17981 1.21241 1.21575 1.19926 0.94689 0.96036 0.93313 1.21040 1.00465 0.95744 0.96360 1.21209 1.02131 0.93009 0.99868 1.21208 1.00619 0.99956 0.94022 1.21339 1.01654 0.95446 0.98383 1.21192 0.97302 0.92696 1.00009 1.21084 1.02801 1.00823 0.92039 1.21075 0.98042 0.95389 0.97860 0.94038 0.90687 0.92360 0.90249 0.92260 0.90932 0.93009 0.83747 0.85179 0.75026 0.93449 0.88208 0.85142 0.84280 0.85427 0.86779 0.87515 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.00 71.98 0.65 -2.02 16 2 C -0.05 -1.00 3.09 -11.54 -0.04 -1.04 16 3 C -0.14 -2.25 9.01 71.98 0.65 -1.60 16 4 C -0.11 -2.90 4.79 -19.84 -0.09 -3.00 16 5 C -0.09 -2.56 8.70 22.25 0.19 -2.37 16 6 C -0.16 -5.35 9.96 22.39 0.22 -5.13 16 7 C 0.15 5.76 6.28 38.15 0.24 6.00 16 8 N -0.67 -28.11 5.26 -303.50 -1.60 -29.71 16 9 C 0.55 26.62 5.06 87.66 0.44 27.06 16 10 O -0.56 -30.12 11.59 -3.07 -0.04 -30.16 16 11 C 0.05 2.26 2.78 -13.03 -0.04 2.22 16 12 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 13 C -0.54 -25.90 7.09 25.60 0.18 -25.72 16 14 H 0.08 3.46 7.82 -2.91 -0.02 3.43 16 15 C 0.04 2.14 3.85 84.66 0.33 2.47 16 16 N -0.87 -48.54 11.06 21.45 0.24 -48.31 16 17 Si 0.94 40.45 29.54 68.60 2.03 42.48 16 18 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 19 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 21 C -0.04 -1.85 4.61 -19.86 -0.09 -1.94 16 22 C -0.12 -5.31 8.21 22.27 0.18 -5.12 16 23 C -0.14 -5.64 10.05 22.27 0.22 -5.41 16 24 C -0.14 -5.15 10.05 22.27 0.22 -4.92 16 25 C -0.15 -6.01 10.05 22.27 0.22 -5.78 16 26 C -0.09 -4.35 8.40 22.27 0.19 -4.16 16 27 C -0.15 -5.74 8.66 22.39 0.19 -5.55 16 28 C -0.11 -3.35 9.66 22.25 0.21 -3.14 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.06 7.37 -2.38 -0.02 1.04 16 32 H 0.08 1.50 7.87 -2.39 -0.02 1.49 16 33 H 0.06 0.93 7.40 -2.39 -0.02 0.91 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.14 3.13 7.09 -2.91 -0.02 3.11 16 37 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.41 15.40 8.64 -92.71 -0.80 14.60 16 39 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.10 4.52 7.05 -2.91 -0.02 4.50 16 41 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 42 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 43 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 44 H 0.11 5.48 5.99 -2.91 -0.02 5.47 16 45 H 0.11 4.65 6.39 -2.91 -0.02 4.63 16 46 H 0.13 3.62 7.94 -2.91 -0.02 3.60 16 Total: -1.00 -63.78 372.89 4.91 -58.87 By element: Atomic # 1 Polarization: 45.79 SS G_CDS: 0.18 Total: 45.97 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 4.10 Total: -39.15 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.36 Total: -78.01 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.04 Total: -30.16 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -63.78 4.91 -58.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124499756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.776 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds