Wall clock time and date at job start Tue Mar 31 2020 13:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38263 * 120.00241 * 2 1 4 4 C 1.38214 * 119.99768 * 180.02562 * 3 2 1 5 5 C 1.38251 * 120.00312 * 359.76345 * 4 3 2 6 6 C 1.38222 * 119.99818 * 0.46692 * 5 4 3 7 7 C 1.50700 * 119.99811 * 179.78619 * 6 5 4 8 8 C 1.53005 * 109.47241 * 269.72806 * 7 6 5 9 9 C 1.50696 * 109.47128 * 184.25702 * 8 7 6 10 10 O 1.21286 * 120.00056 * 5.35129 * 9 8 7 11 11 N 1.34776 * 119.99737 * 185.08368 * 9 8 7 12 12 C 1.37102 * 120.00294 * 355.19575 * 11 9 8 13 13 H 1.07997 * 119.99452 * 321.52769 * 12 11 9 14 14 C 1.38945 * 120.00279 * 141.52668 * 12 11 9 15 15 N 1.31410 * 120.00134 * 159.76820 * 14 12 11 16 16 Si 1.86803 * 119.99837 * 339.76742 * 14 12 11 17 17 H 1.48507 * 109.47119 * 95.33307 * 16 14 12 18 18 H 1.48502 * 109.47207 * 215.33145 * 16 14 12 19 19 H 1.48498 * 109.47409 * 335.33409 * 16 14 12 20 20 C 1.46499 * 119.99829 * 175.19874 * 11 9 8 21 21 C 1.50700 * 109.47434 * 90.00151 * 20 11 9 22 22 C 1.38235 * 119.99638 * 269.72616 * 21 20 11 23 23 C 1.38237 * 120.00245 * 179.76413 * 22 21 20 24 24 C 1.38238 * 119.99523 * 0.50242 * 23 22 21 25 25 C 1.38239 * 119.99954 * 359.75074 * 24 23 22 26 26 C 1.38230 * 120.00470 * 89.99439 * 21 20 11 27 27 C 1.38216 * 119.99910 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47034 * 270.02282 * 1 2 3 29 29 H 1.09004 * 109.47074 * 30.02032 * 1 2 3 30 30 H 1.08996 * 109.47098 * 150.02130 * 1 2 3 31 31 H 1.07994 * 119.99672 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.99555 * 179.97438 * 4 3 2 33 33 H 1.07995 * 120.00441 * 180.25525 * 5 4 3 34 34 H 1.08999 * 109.46972 * 149.72999 * 7 6 5 35 35 H 1.08994 * 109.47203 * 29.72793 * 7 6 5 36 36 H 1.08999 * 109.46900 * 64.25172 * 8 7 6 37 37 H 1.09007 * 109.46906 * 304.25839 * 8 7 6 38 38 H 0.96998 * 119.99710 * 179.97438 * 15 14 12 39 39 H 1.09010 * 109.47139 * 209.99774 * 20 11 9 40 40 H 1.08995 * 109.47362 * 329.99382 * 20 11 9 41 41 H 1.08007 * 119.99799 * 359.97438 * 22 21 20 42 42 H 1.07994 * 120.00170 * 180.23438 * 23 22 21 43 43 H 1.08002 * 120.00101 * 179.72274 * 24 23 22 44 44 H 1.08000 * 119.99877 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99659 * 0.02562 * 26 21 20 46 46 H 1.08006 * 119.99734 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0001 0.0039 6 6 3.5806 -1.1971 -0.0009 7 6 4.3341 -2.5022 -0.0010 8 6 4.5881 -2.9444 -1.4436 9 6 5.2484 -4.2990 -1.4448 10 8 5.4039 -4.8988 -0.4022 11 7 5.6612 -4.8463 -2.6052 12 6 5.3930 -4.2173 -3.7936 13 1 4.4438 -3.7238 -3.9410 14 6 6.3424 -4.2147 -4.8080 15 7 5.9774 -3.9830 -6.0490 16 14 8.1378 -4.5406 -4.4079 17 1 8.4396 -5.9788 -4.6224 18 1 8.9997 -3.7166 -5.2930 19 1 8.4013 -4.1857 -2.9902 20 6 6.3965 -6.1133 -2.5967 21 6 5.4232 -7.2597 -2.6941 22 6 4.9046 -7.8256 -1.5444 23 6 4.0080 -8.8739 -1.6337 24 6 3.6380 -9.3632 -2.8726 25 6 4.1606 -8.8008 -4.0221 26 6 5.0532 -7.7490 -3.9328 27 6 2.1980 -1.1970 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 -0.0010 33 1 5.3517 -0.0002 0.0076 34 1 3.7453 -3.2616 0.5134 35 1 5.2868 -2.3717 0.5121 36 1 5.2395 -2.2221 -1.9356 37 1 3.6400 -3.0018 -1.9783 38 1 6.6403 -3.9809 -6.7571 39 1 7.0790 -6.1431 -3.4462 40 1 6.9653 -6.1972 -1.6707 41 1 5.1974 -7.4463 -0.5764 42 1 3.6000 -9.3135 -0.7357 43 1 2.9409 -10.1852 -2.9423 44 1 3.8719 -9.1833 -4.9899 45 1 5.4620 -7.3100 -4.8309 46 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180164493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:19 Heat of formation + Delta-G solvation = 7.810683 kcal Electronic energy + Delta-G solvation = -26517.749120 eV Core-core repulsion = 22950.709486 eV Total energy + Delta-G solvation = -3567.039634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.53176 -39.12981 -38.09089 -35.14053 -33.93945 -32.28646 -32.09873 -31.04280 -30.34140 -29.35534 -26.85832 -26.12351 -25.06428 -23.55407 -21.97667 -21.83875 -20.96156 -20.07351 -18.93545 -17.14065 -16.55398 -16.23790 -15.85044 -15.57177 -15.33022 -14.73308 -14.62895 -14.34451 -14.28835 -13.91393 -13.66165 -13.18155 -12.92718 -12.89762 -12.81662 -12.61504 -12.50999 -12.29767 -12.09764 -12.04221 -11.76850 -11.56090 -11.23055 -11.03364 -10.95059 -10.79336 -10.68315 -10.48384 -10.33313 -10.21430 -9.97818 -9.26192 -8.77824 -8.60455 -8.39816 -8.37747 -8.13731 -7.86242 -6.53871 -4.14125 1.50764 1.54668 1.84991 1.94961 2.98805 3.16437 3.22590 3.70258 3.88000 4.05151 4.17810 4.62607 4.87235 4.90754 4.95179 5.11316 5.27813 5.37116 5.37830 5.39648 5.49261 5.55138 5.58555 5.68909 5.71068 5.79609 5.79943 5.85005 5.85283 6.00886 6.07869 6.16259 6.21714 6.25613 6.32940 6.41758 6.49379 6.52864 6.61731 6.62795 6.69991 6.72815 6.92270 6.97957 7.00016 7.18764 7.26294 7.29915 7.54647 8.02685 8.20366 8.90260 9.29176 9.64033 10.56595 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011432 B = 0.003751 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.708436 B = 7463.000144 C = 8723.327308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.065 4.065 7 C -0.067 4.067 8 C -0.109 4.109 9 C 0.483 3.517 10 O -0.597 6.597 11 N -0.459 5.459 12 C -0.339 4.339 13 H 0.104 0.896 14 C 0.069 3.931 15 N -0.857 5.857 16 Si 0.870 3.130 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.261 1.261 20 C 0.136 3.864 21 C -0.083 4.083 22 C -0.099 4.099 23 C -0.133 4.133 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.091 4.091 27 C -0.117 4.117 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.275 0.725 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 2.341 7.787 9.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.141 4.141 6 C -0.065 4.065 7 C -0.104 4.104 8 C -0.149 4.149 9 C 0.273 3.727 10 O -0.482 6.482 11 N -0.179 5.179 12 C -0.466 4.466 13 H 0.121 0.879 14 C -0.138 4.138 15 N -0.491 5.491 16 Si 0.697 3.303 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.185 1.185 20 C 0.014 3.986 21 C -0.084 4.084 22 C -0.118 4.118 23 C -0.151 4.151 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.110 4.110 27 C -0.135 4.135 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.144 0.856 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.142 0.858 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.251 2.087 8.063 9.846 hybrid contribution 0.888 -0.052 -0.346 0.955 sum -4.363 2.035 7.717 9.095 Atomic orbital electron populations 1.20774 0.91515 1.02680 1.01997 1.19880 0.95845 0.93240 0.99859 1.20934 0.94282 0.97209 1.02646 1.21079 0.94259 0.97853 1.00239 1.21081 0.99947 0.91992 1.01030 1.20052 0.93701 0.95436 0.97337 1.20408 1.00034 0.92791 0.97193 1.21306 1.01933 0.95630 0.96031 1.20473 0.81780 0.87561 0.82888 1.90512 1.61097 1.64619 1.32008 1.43748 1.51340 1.16581 1.06246 1.19061 1.02620 1.35502 0.89385 0.87899 1.25330 0.98418 0.95376 0.94705 1.69752 1.34973 1.45202 0.99214 0.87044 0.85483 0.78009 0.79716 1.19961 1.21340 1.18471 1.20623 0.92949 0.83329 1.01712 1.20266 0.99008 0.96008 0.93126 1.21210 0.96537 0.95330 0.98706 1.21038 0.99005 0.97908 0.97181 1.21017 1.00561 1.00353 0.92877 1.21060 0.98314 0.97397 0.98007 1.21158 0.96945 0.95239 0.97673 1.20967 0.93728 0.97505 1.01315 0.91469 0.91776 0.91520 0.86615 0.86393 0.86114 0.90499 0.90915 0.89209 0.89885 0.91435 0.91085 0.90531 0.85585 0.86826 0.86947 0.86655 0.85819 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16 2 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 3 C -0.13 -1.60 9.70 -39.58 -0.38 -1.99 16 4 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16 5 C -0.12 -1.71 9.70 -39.58 -0.38 -2.09 16 6 C -0.07 -0.98 5.13 -104.62 -0.54 -1.52 16 7 C -0.07 -1.10 4.73 -27.88 -0.13 -1.23 16 8 C -0.11 -2.09 4.40 -27.88 -0.12 -2.21 16 9 C 0.48 10.81 7.61 -10.99 -0.08 10.73 16 10 O -0.60 -13.99 14.76 5.55 0.08 -13.91 16 11 N -0.46 -10.76 2.15 -116.10 -0.25 -11.01 16 12 C -0.34 -8.51 8.97 -14.93 -0.13 -8.64 16 13 H 0.10 2.75 7.43 -52.49 -0.39 2.36 16 14 C 0.07 1.76 5.33 -17.47 -0.09 1.67 16 15 N -0.86 -22.81 13.96 55.50 0.77 -22.03 16 16 Si 0.87 19.78 24.94 -169.99 -4.24 15.54 16 17 H -0.27 -5.98 6.70 56.52 0.38 -5.60 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 20 C 0.14 3.01 4.28 -5.19 -0.02 2.99 16 21 C -0.08 -1.71 5.46 -104.63 -0.57 -2.28 16 22 C -0.10 -1.89 9.57 -39.58 -0.38 -2.27 16 23 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 24 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 25 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 26 C -0.09 -1.81 9.70 -39.59 -0.38 -2.19 16 27 C -0.12 -1.65 9.36 -39.58 -0.37 -2.02 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.08 1.31 7.85 -51.93 -0.41 0.90 16 35 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 36 H 0.09 1.73 8.03 -51.93 -0.42 1.32 16 37 H 0.08 1.59 7.81 -51.93 -0.41 1.19 16 38 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.07 1.59 3.17 -51.92 -0.16 1.43 16 40 H 0.08 1.65 7.44 -51.93 -0.39 1.27 16 41 H 0.13 2.44 7.41 -52.48 -0.39 2.05 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.12 2.56 8.06 -52.49 -0.42 2.13 16 46 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -28.21 381.05 -10.12 -38.32 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.78 Total: 10.34 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -5.44 Total: -22.99 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.52 Total: -33.04 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.08 Total: -13.91 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.24 Total: 15.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.21 -10.12 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180164493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.134 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds