Wall clock time and date at job start Tue Mar 31 2020 14:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31261 * 119.80157 * 2 1 4 4 C 1.33068 * 121.72209 * 180.02562 * 3 2 1 5 5 C 1.47830 * 119.45425 * 179.97438 * 4 3 2 6 6 C 1.39742 * 120.15776 * 179.72384 * 5 4 3 7 7 C 1.37555 * 119.80738 * 179.80170 * 6 5 4 8 8 C 1.39429 * 120.41109 * 0.53409 * 7 6 5 9 9 C 1.38657 * 119.92541 * 359.56619 * 8 7 6 10 10 C 1.38124 * 119.96854 * 0.27156 * 9 8 7 11 11 C 1.50796 * 121.38155 * 180.54475 * 9 8 7 12 12 C 1.53058 * 109.68984 * 342.15042 * 11 9 8 13 13 C 1.53405 * 108.30605 * 48.17996 * 12 11 9 14 14 C 1.52999 * 109.68507 * 175.50185 * 13 12 11 15 15 C 1.53006 * 109.68289 * 54.94467 * 13 12 11 16 16 O 1.35785 * 118.34554 * 179.46977 * 8 7 6 17 17 C 1.39974 * 121.08191 * 359.74917 * 4 3 2 18 18 C 1.36546 * 119.46976 * 0.52587 * 17 4 3 19 19 C 1.40959 * 119.79867 * 180.02562 * 2 1 3 20 20 C 1.41025 * 120.54533 * 359.97356 * 19 2 1 21 21 H 1.08002 * 119.99846 * 334.64407 * 20 19 2 22 22 C 1.39994 * 120.00142 * 154.64564 * 20 19 2 23 23 N 1.30815 * 119.99381 * 343.63393 * 22 20 19 24 24 Si 1.86791 * 120.00252 * 163.63673 * 22 20 19 25 25 H 1.48501 * 109.47243 * 59.99966 * 24 22 20 26 26 H 1.48497 * 109.47243 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47331 * 299.99969 * 24 22 20 28 28 H 1.09001 * 109.46527 * 269.97599 * 1 2 3 29 29 H 1.08998 * 109.47083 * 29.97409 * 1 2 3 30 30 H 1.08993 * 109.47222 * 149.97557 * 1 2 3 31 31 H 1.08001 * 120.09543 * 0.08577 * 6 5 4 32 32 H 1.08001 * 119.79460 * 180.26150 * 7 6 5 33 33 H 1.08001 * 119.90313 * 179.80295 * 10 9 8 34 34 H 1.09001 * 109.43714 * 102.21803 * 11 9 8 35 35 H 1.09004 * 109.43366 * 222.08535 * 11 9 8 36 36 H 1.08995 * 109.69294 * 288.48062 * 12 11 9 37 37 H 1.09000 * 109.73272 * 167.89959 * 12 11 9 38 38 H 1.08996 * 109.46860 * 178.92415 * 14 13 12 39 39 H 1.09002 * 109.46625 * 298.91946 * 14 13 12 40 40 H 1.09002 * 109.46950 * 58.91977 * 14 13 12 41 41 H 1.08998 * 109.47135 * 301.08003 * 15 13 12 42 42 H 1.08992 * 109.46787 * 61.07843 * 15 13 12 43 43 H 1.08997 * 109.47283 * 181.08350 * 15 13 12 44 44 H 1.08004 * 120.26185 * 180.28790 * 17 4 3 45 45 H 1.07997 * 120.79575 * 179.76390 * 18 17 4 46 46 H 0.97007 * 119.99312 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1390 0.0000 4 6 3.4893 1.1836 -0.0005 5 6 4.1726 2.4945 -0.0011 6 6 5.5686 2.5585 0.0042 7 6 6.1970 3.7821 -0.0004 8 6 5.4498 4.9593 0.0008 9 6 4.0646 4.8993 -0.0024 10 6 3.4270 3.6740 -0.0010 11 6 3.2244 6.1515 -0.0134 12 6 4.0750 7.3471 0.4220 13 6 5.3895 7.3165 -0.3682 14 6 6.2175 8.5604 -0.0395 15 6 5.0885 7.2783 -1.8679 16 8 6.1133 6.1440 0.0071 17 6 4.2517 0.0097 0.0042 18 6 3.6206 -1.2011 -0.0015 19 6 2.2075 -1.2232 -0.0005 20 6 1.5097 -2.4487 -0.0005 21 1 0.5082 -2.4999 0.4004 22 6 2.1152 -3.5990 -0.5202 23 7 3.1717 -3.4935 -1.2843 24 14 1.4146 -5.2843 -0.1225 25 1 0.0138 -5.3654 -0.6089 26 1 2.2310 -6.3299 -0.7898 27 1 1.4414 -5.4974 1.3469 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 6.1524 1.6498 0.0073 32 1 7.2759 3.8313 -0.0006 33 1 2.3479 3.6285 -0.0002 34 1 2.8442 6.3243 -1.0202 35 1 2.3871 6.0325 0.6743 36 1 4.2862 7.2784 1.4891 37 1 3.5417 8.2742 0.2120 38 1 7.1587 8.5257 -0.5881 39 1 5.6620 9.4530 -0.3273 40 1 6.4215 8.5887 1.0308 41 1 4.4907 6.3960 -2.0961 42 1 4.5362 8.1745 -2.1504 43 1 6.0243 7.2373 -2.4253 44 1 5.3305 0.0614 0.0084 45 1 4.1878 -2.1202 -0.0019 46 1 3.5915 -4.2906 -1.6441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243916674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:31 Heat of formation + Delta-G solvation = -11.790673 kcal Electronic energy + Delta-G solvation = -26465.944420 eV Core-core repulsion = 22898.054808 eV Total energy + Delta-G solvation = -3567.889612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70950 -38.76307 -37.24772 -34.71051 -34.27021 -32.76217 -31.52434 -30.93237 -29.41086 -28.29660 -27.54682 -26.96108 -24.94083 -23.95370 -22.56651 -22.20229 -20.81303 -20.26436 -18.53078 -17.44165 -17.26456 -16.06091 -15.94030 -15.34994 -15.05857 -14.75170 -14.58984 -14.13172 -13.86529 -13.57928 -13.24804 -13.12551 -12.99533 -12.80214 -12.69282 -12.29721 -12.24979 -12.16973 -11.98336 -11.90188 -11.67547 -11.61359 -11.54207 -11.36990 -11.02464 -10.92249 -10.86103 -10.69848 -10.50761 -10.46833 -10.05967 -9.79461 -9.48813 -8.38440 -8.31384 -8.08478 -8.05943 -7.12137 -6.90416 -4.53376 1.60032 1.84581 2.66082 2.91755 2.94178 2.96465 3.14316 3.40813 3.73407 4.16176 4.53057 4.59051 4.66388 4.73894 4.98259 5.09311 5.25430 5.32001 5.36390 5.45388 5.46765 5.56434 5.59238 5.61930 5.72387 5.81640 5.83907 5.92573 5.94652 6.00977 6.05991 6.16900 6.24143 6.31197 6.47582 6.51921 6.61418 6.70098 6.72380 6.82226 6.83662 6.94142 7.05436 7.23297 7.25734 7.33130 7.66466 7.77446 7.86771 7.89453 8.30957 8.51925 8.62518 9.57831 9.89294 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.031169 B = 0.002586 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.098495 B =10823.423008 C =11430.261095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.007 3.993 3 N -0.449 5.449 4 C 0.005 3.995 5 C -0.009 4.009 6 C -0.101 4.101 7 C -0.145 4.145 8 C 0.103 3.897 9 C -0.158 4.158 10 C -0.078 4.078 11 C -0.075 4.075 12 C -0.145 4.145 13 C 0.112 3.888 14 C -0.137 4.137 15 C -0.175 4.175 16 O -0.314 6.314 17 C -0.128 4.128 18 C -0.141 4.141 19 C 0.073 3.927 20 C -0.433 4.433 21 H 0.088 0.912 22 C 0.072 3.928 23 N -0.778 5.778 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.276 1.276 27 H -0.261 1.261 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.126 0.874 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.114 14.540 0.732 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 N -0.157 5.157 4 C -0.129 4.129 5 C -0.010 4.010 6 C -0.120 4.120 7 C -0.163 4.163 8 C 0.059 3.941 9 C -0.158 4.158 10 C -0.097 4.097 11 C -0.112 4.112 12 C -0.182 4.182 13 C 0.074 3.926 14 C -0.194 4.194 15 C -0.233 4.233 16 O -0.229 6.229 17 C -0.148 4.148 18 C -0.166 4.166 19 C 0.068 3.932 20 C -0.461 4.461 21 H 0.106 0.894 22 C -0.149 4.149 23 N -0.402 5.402 24 Si 0.738 3.262 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.185 1.185 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.144 0.856 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.031 15.205 0.619 15.516 hybrid contribution 0.162 -1.721 -0.009 1.728 sum 3.193 13.484 0.609 13.870 Atomic orbital electron populations 1.20251 0.91075 1.01199 1.00333 1.20982 0.95091 0.88008 1.09715 1.66734 1.08649 1.30391 1.09934 1.18692 0.88997 0.90570 1.14671 1.18555 0.91931 0.92107 0.98415 1.20979 0.93883 0.96664 1.00489 1.20338 0.99347 0.89927 1.06707 1.18595 0.90026 0.84872 1.00618 1.19646 0.92309 0.95624 1.08262 1.20993 1.00328 0.89940 0.98456 1.20462 0.97365 0.91285 1.02091 1.22230 0.96101 0.99114 1.00796 1.21756 0.91782 0.84876 0.94147 1.21758 1.00234 0.94702 1.02685 1.22417 1.02641 1.03065 0.95137 1.85949 1.39682 1.13429 1.83838 1.21292 0.98589 0.93478 1.01476 1.21291 0.94701 0.96623 1.03949 1.18409 0.92532 0.93166 0.89094 1.19635 1.01690 0.92002 1.32812 0.89392 1.26084 0.94236 1.02031 0.92533 1.69790 1.17067 1.32555 1.20755 0.86240 0.80019 0.79786 0.80127 1.18616 1.20095 1.18519 0.93360 0.93221 0.91486 0.85576 0.86053 0.85222 0.90715 0.90371 0.90738 0.90371 0.91608 0.90748 0.91685 0.91281 0.91377 0.91798 0.88112 0.85641 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.58 36.00 0.34 -1.11 16 2 C 0.01 0.18 6.86 -81.81 -0.56 -0.38 16 3 N -0.45 -10.97 9.30 -5.40 -0.05 -11.02 16 4 C 0.01 0.12 6.74 -82.76 -0.56 -0.44 16 5 C -0.01 -0.19 5.88 -104.92 -0.62 -0.80 16 6 C -0.10 -1.84 9.41 -39.27 -0.37 -2.20 16 7 C -0.14 -2.40 9.92 -39.39 -0.39 -2.79 16 8 C 0.10 1.70 6.04 -38.98 -0.24 1.46 16 9 C -0.16 -2.58 5.17 -104.46 -0.54 -3.12 16 10 C -0.08 -1.48 9.19 -39.14 -0.36 -1.84 16 11 C -0.08 -0.96 5.20 -27.81 -0.14 -1.10 16 12 C -0.14 -1.55 5.10 -26.49 -0.14 -1.69 16 13 C 0.11 1.27 1.13 -90.41 -0.10 1.17 16 14 C -0.14 -1.17 8.88 37.16 0.33 -0.84 16 15 C -0.18 -1.86 8.16 37.16 0.30 -1.55 16 16 O -0.31 -4.65 9.67 -19.07 -0.18 -4.83 16 17 C -0.13 -3.00 9.38 -39.54 -0.37 -3.37 16 18 C -0.14 -3.55 8.73 -39.02 -0.34 -3.89 16 19 C 0.07 1.86 5.58 -106.63 -0.59 1.27 16 20 C -0.43 -10.60 8.13 -37.87 -0.31 -10.91 16 21 H 0.09 2.03 6.87 -52.49 -0.36 1.66 16 22 C 0.07 1.67 5.18 -17.33 -0.09 1.58 16 23 N -0.78 -18.80 10.95 55.55 0.61 -18.19 16 24 Si 0.91 17.27 29.59 -169.99 -5.03 12.24 16 25 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 26 H -0.28 -5.11 7.11 56.52 0.40 -4.70 16 27 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.34 6.76 -51.93 -0.35 0.99 16 31 H 0.13 2.12 6.16 -52.49 -0.32 1.80 16 32 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.13 2.50 7.51 -52.49 -0.39 2.11 16 34 H 0.07 0.89 6.98 -51.93 -0.36 0.52 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.85 5.84 -51.93 -0.30 0.55 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 2.07 6.15 -52.48 -0.32 1.75 16 45 H 0.13 3.18 6.26 -52.49 -0.33 2.85 16 46 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -27.72 365.37 -10.42 -38.13 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.53 Total: 8.72 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -4.74 Total: -30.57 kcal Atomic # 7 Polarization: -29.77 SS G_CDS: 0.56 Total: -29.21 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.18 Total: -4.83 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.72 -10.42 -38.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243916674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.344 kcal (2) G-P(sol) polarization free energy of solvation -27.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds