Wall clock time and date at job start Tue Mar 31 2020 13:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 119.99841 * 2 1 4 4 C 1.38241 * 119.99689 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.99944 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99920 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47051 * 340.00602 * 6 5 4 8 8 C 1.53007 * 109.46736 * 100.00508 * 6 5 4 9 9 N 1.46499 * 109.47364 * 220.00214 * 6 5 4 10 10 C 1.34780 * 119.99976 * 155.00359 * 9 6 5 11 11 O 1.21281 * 119.99796 * 359.97438 * 10 9 6 12 12 C 1.50698 * 119.99956 * 180.02562 * 10 9 6 13 13 H 1.09001 * 109.46895 * 299.99474 * 12 10 9 14 14 C 1.50696 * 109.47184 * 59.99269 * 12 10 9 15 15 H 1.08003 * 120.00118 * 33.09395 * 14 12 10 16 16 C 1.37878 * 119.99985 * 213.08521 * 14 12 10 17 17 N 1.31517 * 119.99762 * 188.38652 * 16 14 12 18 18 Si 1.86800 * 119.99950 * 8.38410 * 16 14 12 19 19 H 1.48507 * 109.46954 * 275.31066 * 18 16 14 20 20 H 1.48495 * 109.47196 * 35.31305 * 18 16 14 21 21 H 1.48502 * 109.46972 * 155.31730 * 18 16 14 22 22 C 1.50700 * 109.47157 * 179.97438 * 12 10 9 23 23 C 1.38234 * 120.00061 * 293.82203 * 22 12 10 24 24 C 1.38233 * 120.00007 * 179.81137 * 23 22 12 25 25 C 1.38236 * 119.99962 * 0.39187 * 24 23 22 26 26 C 1.38242 * 120.00087 * 359.86017 * 25 24 23 27 27 C 1.38231 * 119.99802 * 114.09098 * 22 12 10 28 28 C 1.38234 * 120.00280 * 0.25757 * 5 4 3 29 29 C 1.38232 * 120.00032 * 179.97438 * 2 1 3 30 30 H 1.09008 * 109.46827 * 89.99879 * 1 2 3 31 31 H 1.08996 * 109.47500 * 209.99802 * 1 2 3 32 32 H 1.09003 * 109.47065 * 329.99902 * 1 2 3 33 33 H 1.07996 * 120.00118 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.99983 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.47006 * 299.99527 * 8 6 5 36 36 H 1.08994 * 109.47718 * 60.00154 * 8 6 5 37 37 H 1.09010 * 109.46620 * 180.02562 * 8 6 5 38 38 H 0.96998 * 119.99868 * 334.99993 * 9 6 5 39 39 H 0.97006 * 119.99599 * 180.02562 * 17 16 14 40 40 H 1.08003 * 119.99709 * 359.97438 * 23 22 12 41 41 H 1.07997 * 119.99917 * 180.22692 * 24 23 22 42 42 H 1.07997 * 120.00032 * 179.83755 * 25 24 23 43 43 H 1.07993 * 120.00045 * 179.97438 * 26 25 24 44 44 H 1.08003 * 120.00622 * 359.97438 * 27 22 12 45 45 H 1.07999 * 120.00370 * 179.72425 * 28 5 4 46 46 H 1.08003 * 120.00045 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2716 0.0000 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 1 6.1417 0.9655 -0.3538 8 6 6.2897 -0.2501 1.4187 9 7 6.2663 -1.0585 -0.8895 10 6 7.4880 -0.9582 -1.4500 11 8 8.1833 0.0084 -1.2198 12 6 7.9894 -2.0467 -2.3636 13 1 8.0263 -2.9900 -1.8187 14 6 7.0586 -2.1828 -3.5409 15 1 6.5533 -1.3126 -3.9333 16 6 6.8520 -3.4182 -4.1173 17 7 6.1743 -3.5148 -5.2402 18 14 7.5348 -4.9545 -3.3032 19 1 8.9476 -5.1482 -3.7178 20 1 7.4683 -4.8039 -1.8274 21 1 6.7315 -6.1328 -3.7173 22 6 9.3703 -1.6947 -2.8536 23 6 9.5524 -0.6033 -3.6822 24 6 10.8197 -0.2781 -4.1285 25 6 11.9037 -1.0492 -3.7529 26 6 11.7210 -2.1438 -2.9285 27 6 10.4542 -2.4666 -2.4791 28 6 3.5805 -1.1972 -0.0054 29 6 2.1982 -1.1971 0.0005 30 1 -0.3633 0.0000 -1.0278 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6581 2.1324 -0.0004 34 1 4.1205 2.1324 -0.0010 35 1 5.9269 0.5375 2.0792 36 1 5.9267 -1.2156 1.7708 37 1 7.3798 -0.2496 1.4179 38 1 5.7101 -1.8314 -1.0738 39 1 6.0287 -4.3840 -5.6455 40 1 8.7049 -0.0030 -3.9786 41 1 10.9624 0.5768 -4.7728 42 1 12.8934 -0.7967 -4.1037 43 1 12.5678 -2.7464 -2.6354 44 1 10.3114 -3.3217 -1.8350 45 1 4.1204 -2.1325 -0.0099 46 1 1.6582 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264438621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:27 Heat of formation + Delta-G solvation = -1.670134 kcal Electronic energy + Delta-G solvation = -26767.312835 eV Core-core repulsion = 23199.862082 eV Total energy + Delta-G solvation = -3567.450753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88831 -39.04403 -37.86846 -35.35923 -33.63906 -32.25210 -31.48968 -30.87659 -30.09503 -29.95540 -27.58829 -26.69659 -23.82476 -22.89503 -22.63463 -21.81065 -21.10067 -20.06695 -19.24853 -17.13025 -16.97001 -16.14429 -15.89985 -15.32512 -15.08709 -14.63295 -14.54929 -14.33092 -13.98426 -13.81534 -13.65779 -13.35688 -13.23023 -13.07464 -12.67438 -12.65133 -12.52208 -12.30133 -12.10687 -12.00525 -11.81084 -11.70091 -11.37415 -11.11609 -11.04073 -10.92650 -10.67090 -10.41984 -10.24577 -9.93051 -9.53974 -8.95016 -8.85456 -8.72988 -8.52467 -8.36853 -8.09532 -7.78206 -6.30039 -4.33303 1.36038 1.47083 2.19241 2.25799 3.14785 3.20972 3.25409 3.57482 3.76170 3.99877 4.21981 4.66966 4.71870 4.83574 4.94212 5.01623 5.06436 5.25028 5.46054 5.48465 5.50995 5.57330 5.58200 5.63339 5.70220 5.72559 5.74797 5.82983 5.97644 5.97989 6.08085 6.11147 6.22505 6.31213 6.32972 6.35613 6.47704 6.48400 6.62124 6.67169 6.77793 6.88726 7.05596 7.14785 7.20593 7.29195 7.30897 7.63236 7.83802 8.19881 8.29698 8.71174 9.11786 9.28270 10.81159 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003881 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.426034 B = 7212.124243 C = 8333.194512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.120 4.120 4 C -0.106 4.106 5 C -0.087 4.087 6 C 0.182 3.818 7 H 0.091 0.909 8 C -0.155 4.155 9 N -0.723 5.723 10 C 0.537 3.463 11 O -0.560 6.560 12 C 0.022 3.978 13 H 0.068 0.932 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.087 3.913 17 N -0.880 5.880 18 Si 0.864 3.136 19 H -0.266 1.266 20 H -0.264 1.264 21 H -0.284 1.284 22 C -0.026 4.026 23 C -0.071 4.071 24 C -0.130 4.130 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.104 4.104 29 C -0.116 4.116 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.404 0.596 39 H 0.268 0.732 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.123 0.877 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.068 4.312 10.936 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.088 4.088 6 C 0.077 3.923 7 H 0.109 0.891 8 C -0.214 4.214 9 N -0.376 5.376 10 C 0.326 3.674 11 O -0.439 6.439 12 C 0.001 3.999 13 H 0.086 0.914 14 C -0.549 4.549 15 H 0.100 0.900 16 C -0.118 4.118 17 N -0.515 5.515 18 Si 0.690 3.310 19 H -0.191 1.191 20 H -0.189 1.189 21 H -0.210 1.210 22 C -0.027 4.027 23 C -0.089 4.089 24 C -0.148 4.148 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.154 4.154 28 C -0.122 4.122 29 C -0.134 4.134 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.240 0.760 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.141 0.859 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.655 4.866 10.933 12.841 hybrid contribution 0.031 -1.358 0.036 1.359 sum -4.624 3.508 10.969 12.410 Atomic orbital electron populations 1.20775 0.91435 1.02437 1.02297 1.19898 0.95928 0.93301 1.00137 1.20955 0.94011 0.97409 1.01468 1.20969 0.94110 0.97440 0.99906 1.19987 0.95098 0.93584 1.00104 1.19663 0.88540 0.93543 0.90559 0.89091 1.22159 1.02027 1.01667 0.95533 1.46050 1.18693 1.24100 1.48719 1.21138 0.80131 0.87933 0.78186 1.90587 1.56883 1.33927 1.62488 1.18499 0.91604 0.94244 0.95573 0.91433 1.20520 1.25567 0.96255 1.12557 0.90003 1.24972 0.94045 0.98634 0.94183 1.69885 1.39631 1.25175 1.16838 0.87009 0.80304 0.83292 0.80365 1.19148 1.18874 1.21039 1.20046 0.94500 0.93454 0.94668 1.20837 0.96212 0.96339 0.95518 1.21028 0.93209 0.99744 1.00793 1.20855 0.98051 0.96812 1.00438 1.20871 0.96536 0.97873 0.99445 1.20958 0.92751 1.00284 1.01426 1.20960 0.94174 0.97763 0.99289 1.20996 0.94072 0.97521 1.00856 0.91207 0.91701 0.91791 0.86233 0.85978 0.92091 0.92539 0.91657 0.76009 0.92151 0.86527 0.87160 0.87370 0.87314 0.87503 0.85891 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.09 -1.07 5.88 -104.63 -0.62 -1.69 16 3 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 4 C -0.11 -1.36 9.67 -39.58 -0.38 -1.74 16 5 C -0.09 -1.23 4.96 -104.63 -0.52 -1.75 16 6 C 0.18 2.83 2.78 -69.08 -0.19 2.64 16 7 H 0.09 1.54 7.44 -51.93 -0.39 1.15 16 8 C -0.16 -2.12 9.46 37.16 0.35 -1.77 16 9 N -0.72 -13.19 4.93 -54.93 -0.27 -13.46 16 10 C 0.54 11.57 7.01 -10.98 -0.08 11.50 16 11 O -0.56 -13.08 15.08 5.56 0.08 -13.00 16 12 C 0.02 0.51 1.98 -94.08 -0.19 0.32 16 13 H 0.07 1.50 4.82 -51.93 -0.25 1.25 16 14 C -0.51 -13.14 8.00 -34.44 -0.28 -13.41 16 15 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 16 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 17 N -0.88 -24.93 13.96 55.43 0.77 -24.15 16 18 Si 0.86 19.74 27.31 -169.99 -4.64 15.10 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.26 -5.58 6.41 56.52 0.36 -5.22 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.03 -0.58 4.30 -104.63 -0.45 -1.03 16 23 C -0.07 -1.58 8.31 -39.58 -0.33 -1.91 16 24 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 25 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 26 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 27 C -0.14 -2.80 9.67 -39.58 -0.38 -3.19 16 28 C -0.10 -1.41 9.06 -39.58 -0.36 -1.77 16 29 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 1.38 8.04 -52.49 -0.42 0.96 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 38 H 0.40 7.13 6.74 -40.82 -0.28 6.86 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.12 2.69 7.89 -52.48 -0.41 2.28 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 2.03 7.96 -52.48 -0.42 1.61 16 45 H 0.12 1.59 6.90 -52.49 -0.36 1.23 16 46 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -30.23 383.17 -10.16 -40.39 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -6.77 Total: 13.80 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -5.11 Total: -24.46 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.50 Total: -37.61 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.64 Total: 15.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.23 -10.16 -40.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264438621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.723 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds