Wall clock time and date at job start Tue Mar 31 2020 14:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 C 1.50704 * 109.47342 * 180.02562 * 3 2 1 5 5 C 1.33807 * 124.52454 * 89.72296 * 4 3 2 6 6 C 1.37470 * 115.10407 * 179.85421 * 5 4 3 7 7 C 1.36643 * 113.29386 * 0.43010 * 6 5 4 8 8 C 1.46581 * 125.45762 * 179.80761 * 7 6 5 9 9 O 1.21700 * 120.00268 * 352.54242 * 8 7 6 10 10 N 1.34780 * 120.00255 * 172.54719 * 8 7 6 11 11 C 1.46500 * 119.99811 * 1.90639 * 10 8 7 12 12 C 1.50702 * 109.46679 * 82.13572 * 11 10 8 13 13 H 1.08005 * 119.99827 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00153 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00100 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00385 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47357 * 89.98984 * 16 14 12 18 18 H 1.48492 * 109.47139 * 209.99643 * 16 14 12 19 19 H 1.48502 * 109.46631 * 329.99629 * 16 14 12 20 20 C 1.46499 * 120.00298 * 181.92159 * 10 8 7 21 21 C 1.52999 * 109.47279 * 177.34716 * 20 10 8 22 22 C 1.53005 * 109.46461 * 297.34141 * 20 10 8 23 23 C 1.52997 * 109.47691 * 57.34019 * 20 10 8 24 24 C 1.53001 * 109.46793 * 61.51257 * 23 20 10 25 25 S 1.70619 * 124.52094 * 270.03220 * 4 3 2 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47310 * 299.99505 * 1 2 3 28 28 H 1.09003 * 109.47784 * 59.99466 * 1 2 3 29 29 H 1.08998 * 109.47031 * 240.00968 * 2 1 3 30 30 H 1.08993 * 109.47685 * 120.00391 * 2 1 3 31 31 H 1.09007 * 109.47208 * 60.00398 * 3 2 1 32 32 H 1.08994 * 109.47634 * 300.00343 * 3 2 1 33 33 H 1.08011 * 122.44620 * 0.02562 * 5 4 3 34 34 H 1.08000 * 123.35577 * 180.19402 * 6 5 4 35 35 H 1.08997 * 109.47290 * 202.13285 * 11 10 8 36 36 H 1.08997 * 109.47436 * 322.13571 * 11 10 8 37 37 H 0.96995 * 120.00499 * 180.02562 * 15 14 12 38 38 H 1.08997 * 109.47084 * 59.99538 * 21 20 10 39 39 H 1.08997 * 109.47079 * 179.97438 * 21 20 10 40 40 H 1.08997 * 109.47171 * 299.99567 * 21 20 10 41 41 H 1.09000 * 109.47231 * 65.19657 * 22 20 10 42 42 H 1.09003 * 109.47074 * 185.19583 * 22 20 10 43 43 H 1.08996 * 109.47241 * 305.19470 * 22 20 10 44 44 H 1.08994 * 109.47209 * 181.51535 * 23 20 10 45 45 H 1.09002 * 109.47314 * 301.51566 * 23 20 10 46 46 H 1.09002 * 109.46985 * 60.00633 * 24 23 20 47 47 H 1.09006 * 109.46731 * 180.02562 * 24 23 20 48 48 H 1.08994 * 109.47470 * 300.00118 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3049 1.4375 -1.1034 6 6 5.6611 1.4418 -0.8789 7 6 5.9893 1.4412 0.4475 8 6 7.3526 1.4411 0.9861 9 8 8.3026 1.3048 0.2378 10 7 7.5541 1.5919 2.3102 11 6 6.4093 1.7140 3.2161 12 6 5.8749 0.3421 3.5379 13 1 6.3412 -0.5331 3.1100 14 6 4.7901 0.2043 4.3776 15 7 4.2220 1.2700 4.8983 16 14 4.1281 -1.4962 4.7771 17 1 4.8147 -2.0239 5.9835 18 1 2.6684 -1.4109 5.0357 19 1 4.3752 -2.4056 3.6294 20 6 8.9179 1.6340 2.8435 21 6 8.8679 1.8772 4.3532 22 6 9.6159 0.3013 2.5645 23 6 9.6944 2.7672 2.1698 24 6 9.0176 4.1039 2.4801 25 16 4.5145 1.4416 1.4047 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 3.8819 1.4332 -2.0972 34 1 6.3943 1.4415 -1.6720 35 1 6.7248 2.2060 4.1361 36 1 5.6285 2.3050 2.7374 37 1 3.4591 1.1731 5.4893 38 1 8.3148 1.0699 4.8332 39 1 9.8826 1.9081 4.7501 40 1 8.3706 2.8266 4.5520 41 1 9.7340 0.1713 1.4888 42 1 10.5964 0.2980 3.0408 43 1 9.0146 -0.5146 2.9653 44 1 10.7168 2.7814 2.5470 45 1 9.7071 2.6080 1.0915 46 1 9.0049 4.2631 3.5583 47 1 9.5705 4.9112 1.9997 48 1 7.9951 4.0896 2.1029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269758927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:57 Heat of formation + Delta-G solvation = -31.919355 kcal Electronic energy + Delta-G solvation = -26968.629598 eV Core-core repulsion = 23535.311091 eV Total energy + Delta-G solvation = -3433.318506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30249 -38.93423 -37.64078 -35.85351 -35.48375 -33.84975 -31.46734 -30.77982 -29.54016 -28.00363 -27.61177 -24.89930 -24.70074 -24.01677 -22.72585 -22.26155 -20.02384 -19.19759 -18.68783 -18.23183 -17.19610 -16.63713 -16.40478 -16.13538 -15.88776 -15.62780 -15.46098 -14.81349 -14.51196 -14.38445 -14.29807 -14.15904 -14.07964 -13.65125 -13.45095 -13.34495 -13.08832 -12.93866 -12.82807 -12.78661 -12.63454 -12.57109 -12.35461 -12.22595 -12.18113 -12.03641 -12.02505 -11.74388 -11.63268 -11.57366 -11.44279 -10.70416 -10.56454 -10.39652 -9.56242 -9.22421 -9.06180 -8.19079 -6.24368 -0.13754 1.01701 1.36966 1.43710 1.49942 1.53871 1.64844 2.26697 2.42688 2.48672 3.12416 3.74005 3.90697 4.03493 4.09478 4.11392 4.20673 4.22314 4.41737 4.46689 4.62756 4.63374 4.67299 4.69920 4.79485 4.80372 4.82094 4.87298 4.93524 4.96672 4.98280 5.05016 5.08412 5.17221 5.21331 5.23932 5.26622 5.33484 5.35033 5.41955 5.45891 5.48946 5.57086 5.69926 5.75123 5.96474 6.02207 6.56303 6.82502 7.32469 7.43245 8.84170 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.006037 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.718942 B = 4637.031645 C = 6191.133758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.042 4.042 4 C -0.280 4.280 5 C -0.169 4.169 6 C -0.078 4.078 7 C -0.322 4.322 8 C 0.584 3.416 9 O -0.583 6.583 10 N -0.583 5.583 11 C 0.230 3.770 12 C -0.532 4.532 13 H 0.045 0.955 14 C 0.054 3.946 15 N -0.894 5.894 16 Si 0.923 3.077 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.277 1.277 20 C 0.170 3.830 21 C -0.143 4.143 22 C -0.150 4.150 23 C -0.130 4.130 24 C -0.142 4.142 25 S 0.353 5.647 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.057 0.943 36 H 0.033 0.967 37 H 0.271 0.729 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 2.394 -4.378 5.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.081 4.081 4 C -0.400 4.400 5 C -0.199 4.199 6 C -0.113 4.113 7 C -0.443 4.443 8 C 0.374 3.626 9 O -0.467 6.467 10 N -0.313 5.313 11 C 0.108 3.892 12 C -0.573 4.573 13 H 0.064 0.936 14 C -0.150 4.150 15 N -0.532 5.532 16 Si 0.749 3.251 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.202 1.202 20 C 0.086 3.914 21 C -0.200 4.200 22 C -0.208 4.208 23 C -0.168 4.168 24 C -0.200 4.200 25 S 0.629 5.371 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.166 0.834 34 H 0.158 0.842 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.070 2.420 -3.054 4.041 hybrid contribution -0.142 -1.117 -1.280 1.705 sum -1.213 1.303 -4.334 4.685 Atomic orbital electron populations 1.21747 0.93793 1.02325 1.02490 1.21541 0.97158 0.95497 1.01633 1.20159 0.86643 0.97964 1.03335 1.25976 1.03399 1.07150 1.03476 1.19811 0.91726 1.08604 0.99746 1.20625 0.96777 0.99562 0.94356 1.24841 0.98408 1.21794 0.99282 1.17189 0.87040 0.76127 0.82284 1.90600 1.42991 1.53970 1.59180 1.48162 1.08057 1.69387 1.05691 1.19561 0.82686 0.96876 0.90121 1.21389 1.14500 0.92554 1.28844 0.93621 1.25203 0.96101 0.98853 0.94866 1.69937 1.22696 1.29311 1.31212 0.86070 0.78351 0.81950 0.78707 1.19998 1.19945 1.20224 1.20529 0.80809 0.95570 0.94512 1.22075 1.03003 1.02199 0.92736 1.22097 1.00595 0.96199 1.01946 1.21904 0.99497 0.93931 1.01484 1.21715 0.99484 0.96786 1.01982 1.86004 0.90880 1.60774 0.99403 0.92037 0.92691 0.91185 0.91620 0.93940 0.91434 0.88823 0.83396 0.84248 0.92553 0.95051 0.91928 0.92768 0.89302 0.91927 0.93058 0.89694 0.94184 0.89227 0.92092 0.91501 0.91700 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.91 71.98 0.71 -2.29 16 2 C -0.12 -3.17 5.92 30.59 0.18 -2.99 16 3 C -0.04 -1.18 5.65 29.85 0.17 -1.01 16 4 C -0.28 -9.76 5.53 24.68 0.14 -9.62 16 5 C -0.17 -5.70 9.99 21.08 0.21 -5.49 16 6 C -0.08 -3.00 10.02 21.71 0.22 -2.78 16 7 C -0.32 -13.96 6.23 24.07 0.15 -13.81 16 8 C 0.58 26.44 6.98 86.42 0.60 27.04 16 9 O -0.58 -27.53 13.10 -4.35 -0.06 -27.59 16 10 N -0.58 -24.74 1.73 -783.83 -1.36 -26.10 16 11 C 0.23 10.46 4.11 85.63 0.35 10.81 16 12 C -0.53 -25.89 6.85 25.60 0.18 -25.71 16 13 H 0.05 2.39 7.81 -2.91 -0.02 2.37 16 14 C 0.05 2.59 5.02 84.65 0.42 3.02 16 15 N -0.89 -44.07 13.29 21.45 0.28 -43.79 16 16 Si 0.92 39.64 29.54 68.60 2.03 41.66 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 C 0.17 6.09 0.73 3.60 0.00 6.10 16 21 C -0.14 -4.62 6.74 71.98 0.49 -4.13 16 22 C -0.15 -5.32 8.36 71.98 0.60 -4.72 16 23 C -0.13 -4.19 4.77 30.59 0.15 -4.04 16 24 C -0.14 -4.31 9.38 71.98 0.68 -3.64 16 25 S 0.35 14.74 15.80 -56.49 -0.89 13.84 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 33 H 0.15 4.04 8.06 -2.90 -0.02 4.02 16 34 H 0.14 5.08 8.06 -2.91 -0.02 5.06 16 35 H 0.06 2.61 5.38 -2.39 -0.01 2.59 16 36 H 0.03 1.54 4.49 -21.25 -0.10 1.44 16 37 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 38 H 0.05 2.00 7.53 -2.39 -0.02 1.98 16 39 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.03 5.35 -2.39 -0.01 2.02 16 41 H 0.05 2.01 6.44 -2.39 -0.02 1.99 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.06 2.29 5.99 -2.39 -0.01 2.28 16 46 H 0.07 1.84 6.40 -2.39 -0.02 1.82 16 47 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 48 H 0.03 0.95 7.65 -2.39 -0.02 0.93 16 Total: -1.00 -55.40 380.14 6.09 -49.31 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.85 Total: 25.93 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 5.24 Total: -33.27 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.07 Total: -69.89 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.06 Total: -27.59 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 14.74 SS G_CDS: -0.89 Total: 13.84 kcal Total: -55.40 6.09 -49.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269758927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.389 kcal (2) G-P(sol) polarization free energy of solvation -55.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds