Wall clock time and date at job start Tue Mar 31 2020 14:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47208 * 2 1 4 4 H 1.09001 * 109.46883 * 305.63570 * 3 2 1 5 5 C 1.53000 * 109.46921 * 185.63459 * 3 2 1 6 6 C 1.50697 * 109.47086 * 64.99900 * 5 3 2 7 7 O 1.21296 * 120.00012 * 359.97438 * 6 5 3 8 8 N 1.34772 * 119.99988 * 179.97438 * 6 5 3 9 9 C 1.40088 * 120.00267 * 175.23439 * 8 6 5 10 10 C 1.38711 * 120.07240 * 34.09864 * 9 8 6 11 11 C 1.38190 * 120.01799 * 179.69710 * 10 9 8 12 12 C 1.38560 * 120.17433 * 0.60230 * 11 10 9 13 13 F 1.35098 * 119.91973 * 179.69896 * 12 11 10 14 14 C 1.38335 * 120.15513 * 359.67504 * 12 11 10 15 15 C 1.38748 * 119.97801 * 0.02562 * 14 12 11 16 16 O 1.35767 * 120.08708 * 179.97438 * 15 14 12 17 17 C 1.34807 * 116.99967 * 6.07344 * 16 15 14 18 18 H 1.07999 * 120.00499 * 5.37702 * 17 16 15 19 19 C 1.38644 * 119.99674 * 185.37800 * 17 16 15 20 20 N 1.31565 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47266 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47216 * 120.00409 * 21 19 17 24 24 H 1.48505 * 109.47568 * 240.00222 * 21 19 17 25 25 C 1.53004 * 109.47071 * 65.63337 * 3 2 1 26 26 C 1.52996 * 109.46937 * 184.83151 * 25 3 2 27 27 C 1.53000 * 109.47080 * 64.83427 * 25 3 2 28 28 H 1.08999 * 109.47849 * 184.73289 * 1 2 3 29 29 H 1.09001 * 109.47446 * 304.73714 * 1 2 3 30 30 H 1.09003 * 109.47091 * 64.72720 * 1 2 3 31 31 H 1.08994 * 109.47142 * 239.99932 * 2 1 3 32 32 H 1.09000 * 109.46664 * 119.99382 * 2 1 3 33 33 H 1.09006 * 109.46917 * 185.00087 * 5 3 2 34 34 H 1.09001 * 109.46980 * 304.99537 * 5 3 2 35 35 H 0.97000 * 120.00070 * 355.23643 * 8 6 5 36 36 H 1.07992 * 119.98988 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.91736 * 180.29406 * 11 10 9 38 38 H 1.07995 * 120.01366 * 180.02562 * 14 12 11 39 39 H 0.97002 * 120.00087 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.47044 * 304.83819 * 25 3 2 41 41 H 1.09003 * 109.47068 * 174.81821 * 26 25 3 42 42 H 1.08992 * 109.47357 * 294.82233 * 26 25 3 43 43 H 1.09004 * 109.46976 * 54.82362 * 26 25 3 44 44 H 1.08999 * 109.47139 * 179.97438 * 27 25 3 45 45 H 1.08997 * 109.47209 * 300.00144 * 27 25 3 46 46 H 1.09000 * 109.47175 * 59.99566 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5634 1.4448 -0.1416 6 6 3.9435 0.8875 -1.4892 7 8 3.0807 0.5238 -2.2603 8 7 5.2420 0.7932 -1.8376 9 6 5.6002 0.1841 -3.0472 10 6 4.7785 0.3078 -4.1578 11 6 5.1361 -0.2883 -5.3522 12 6 6.3088 -1.0210 -5.4412 13 9 6.6504 -1.6066 -6.6098 14 6 7.1308 -1.1537 -4.3365 15 6 6.7811 -0.5528 -3.1359 16 8 7.5859 -0.6821 -2.0502 17 6 8.7699 -1.2992 -2.2361 18 1 9.0787 -1.5870 -3.2301 19 6 9.5912 -1.5645 -1.1510 20 7 9.2148 -1.2145 0.0600 21 14 11.2315 -2.4203 -1.4085 22 1 11.4186 -2.7075 -2.8534 23 1 12.3290 -1.5402 -0.9330 24 1 11.2513 -3.6932 -0.6437 25 6 1.6489 2.1218 1.3140 26 6 2.0523 3.5968 1.2654 27 6 2.3675 1.4346 2.4769 28 1 -0.3635 -1.0241 0.0848 29 1 -0.3634 0.5856 0.8445 30 1 -0.3633 0.4387 -0.9293 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.9351 2.4656 -0.0526 34 1 4.0022 0.8287 0.6433 35 1 5.9285 1.1471 -1.2508 36 1 3.8613 0.8737 -4.0904 37 1 4.4975 -0.1870 -6.2172 38 1 8.0445 -1.7250 -4.4086 39 1 9.7892 -1.4004 0.8192 40 1 0.5710 2.0442 1.4563 41 1 1.6923 4.1016 2.1619 42 1 3.1383 3.6750 1.2157 43 1 1.6135 4.0646 0.3841 44 1 2.0892 1.9187 3.4130 45 1 2.0802 0.3837 2.5115 46 1 3.4454 1.5119 2.3346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120783719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:56 Heat of formation + Delta-G solvation = -108.324459 kcal Electronic energy + Delta-G solvation = -27744.334007 eV Core-core repulsion = 23741.489151 eV Total energy + Delta-G solvation = -4002.844856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -48.26514 -40.29188 -38.98264 -37.61099 -36.24078 -34.05954 -32.43646 -32.31501 -30.49304 -29.36878 -28.08928 -27.28521 -25.54588 -24.79444 -22.46409 -22.23327 -21.62819 -20.13993 -18.64376 -18.36101 -17.81693 -17.05813 -16.62024 -15.49007 -15.27015 -15.16940 -15.00165 -14.91844 -14.80252 -14.29946 -13.90954 -13.67792 -13.65652 -13.46323 -13.37065 -12.98242 -12.89860 -12.83175 -12.34624 -12.19142 -12.09057 -11.72018 -11.69526 -11.46003 -11.33661 -11.27620 -10.99380 -10.97204 -10.72497 -10.52963 -10.41638 -10.27289 -10.18109 -9.81720 -9.65365 -9.16508 -8.98512 -7.90188 -7.13205 -6.62600 -4.20551 1.80102 2.10654 2.98294 3.04217 3.06747 3.11980 3.55684 3.83596 4.32501 4.65119 4.76084 4.79298 4.83201 4.94952 5.09998 5.12974 5.18711 5.23844 5.36815 5.48424 5.54033 5.58199 5.60473 5.66482 5.73026 5.76210 5.80026 5.83166 5.98170 6.00515 6.03294 6.07822 6.18681 6.21362 6.23846 6.34751 6.49823 6.53120 6.64164 6.75484 6.90342 6.93226 7.05770 7.18016 7.63452 7.80769 7.93852 8.58165 8.83505 9.44646 10.54424 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.003802 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.962332 B = 7362.489223 C = 9332.968676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.062 4.062 4 H 0.077 0.923 5 C -0.140 4.140 6 C 0.509 3.491 7 O -0.534 6.534 8 N -0.651 5.651 9 C 0.058 3.942 10 C -0.051 4.051 11 C -0.230 4.230 12 C 0.129 3.871 13 F -0.152 7.152 14 C -0.259 4.259 15 C 0.158 3.842 16 O -0.168 6.168 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.044 3.956 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.094 4.094 26 C -0.151 4.151 27 C -0.154 4.154 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.414 0.586 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.271 0.729 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 6.550 2.561 13.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.081 4.081 4 H 0.095 0.905 5 C -0.180 4.180 6 C 0.298 3.702 7 O -0.412 6.412 8 N -0.295 5.295 9 C -0.036 4.036 10 C -0.071 4.071 11 C -0.250 4.250 12 C 0.109 3.891 13 F -0.130 7.130 14 C -0.280 4.280 15 C 0.102 3.898 16 O -0.070 6.070 17 C -0.469 4.469 18 H 0.112 0.888 19 C -0.162 4.162 20 N -0.492 5.492 21 Si 0.766 3.234 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.113 4.113 26 C -0.208 4.208 27 C -0.211 4.211 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.250 0.750 36 H 0.160 0.840 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.535 6.330 2.521 13.397 hybrid contribution 1.403 -0.529 -0.047 1.500 sum -10.132 5.801 2.474 11.934 Atomic orbital electron populations 1.21767 0.96363 1.01047 1.01334 1.21757 0.95611 0.96267 1.03083 1.20939 0.92890 0.97052 0.97255 0.90455 1.21853 0.98335 1.02870 0.94913 1.20778 0.82004 0.78417 0.89031 1.90609 1.48816 1.48977 1.52817 1.43223 1.08234 1.57621 1.20441 1.16909 0.96292 1.03470 0.86939 1.20672 0.98854 0.98187 0.89388 1.20497 0.98316 1.06960 0.99260 1.17472 0.94898 0.95725 0.80972 1.91410 1.92446 1.82552 1.46631 1.20864 1.04224 1.10473 0.92420 1.18840 0.90516 0.92540 0.87940 1.83939 1.27338 1.67459 1.28309 1.21400 0.91447 1.38486 0.95545 0.88813 1.25282 0.99741 0.96942 0.94196 1.70018 1.37417 1.43269 0.98527 0.85627 0.79874 0.78829 0.79063 1.18943 1.20002 1.20015 1.21204 1.00395 0.94802 0.94850 1.21914 1.01690 0.95784 1.01409 1.21979 1.00983 1.00709 0.97459 0.93269 0.93070 0.92900 0.89825 0.92399 0.88811 0.88335 0.75034 0.83988 0.85988 0.84001 0.91861 0.90818 0.92966 0.92396 0.92728 0.93087 0.92289 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.79 37.16 0.36 -1.22 16 2 C -0.13 -1.61 5.06 -26.73 -0.14 -1.75 16 3 C -0.06 -0.71 1.27 -90.62 -0.12 -0.82 16 4 H 0.08 0.95 7.96 -51.93 -0.41 0.54 16 5 C -0.14 -1.71 4.38 -27.88 -0.12 -1.83 16 6 C 0.51 8.25 7.35 -10.99 -0.08 8.17 16 7 O -0.53 -9.76 11.37 5.54 0.06 -9.70 16 8 N -0.65 -11.64 5.19 -9.72 -0.05 -11.69 16 9 C 0.06 1.19 6.34 -83.45 -0.53 0.66 16 10 C -0.05 -0.97 8.70 -39.42 -0.34 -1.31 16 11 C -0.23 -4.28 10.02 -39.48 -0.40 -4.67 16 12 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 13 F -0.15 -2.92 17.26 2.25 0.04 -2.88 16 14 C -0.26 -5.66 9.10 -39.36 -0.36 -6.02 16 15 C 0.16 3.61 6.66 -38.93 -0.26 3.36 16 16 O -0.17 -4.34 9.31 0.06 0.00 -4.34 16 17 C -0.39 -10.29 9.44 30.88 0.29 -9.99 16 18 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.86 -23.24 13.67 55.48 0.76 -22.48 16 21 Si 0.94 19.56 29.55 -169.99 -5.02 14.54 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 25 C -0.09 -0.88 2.57 -90.62 -0.23 -1.11 16 26 C -0.15 -1.28 8.82 37.16 0.33 -0.95 16 27 C -0.15 -1.43 8.47 37.16 0.31 -1.11 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.48 6.29 -51.93 -0.33 0.15 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.29 5.87 -51.93 -0.30 0.99 16 32 H 0.06 0.69 6.31 -51.93 -0.33 0.36 16 33 H 0.09 0.97 6.45 -51.93 -0.33 0.64 16 34 H 0.10 1.19 6.65 -51.93 -0.35 0.84 16 35 H 0.41 7.05 8.56 -40.82 -0.35 6.70 16 36 H 0.14 2.60 6.14 -52.49 -0.32 2.27 16 37 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 38 H 0.14 3.11 5.72 -52.49 -0.30 2.81 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.07 0.66 6.29 -51.93 -0.33 0.34 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.49 6.71 -51.93 -0.35 0.14 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.56 6.44 -51.93 -0.33 0.23 16 46 H 0.06 0.58 6.46 -51.93 -0.34 0.24 16 LS Contribution 366.68 15.07 5.53 5.53 Total: -1.00 -28.49 366.68 -6.66 -35.15 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.32 Total: 11.15 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.66 Total: -15.28 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.71 Total: -34.17 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.06 Total: -14.04 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.49 -6.66 -35.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120783719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.173 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds