Wall clock time and date at job start Tue Mar 31 2020 14:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47208 * 2 1 4 4 H 1.09001 * 109.46883 * 305.63570 * 3 2 1 5 5 C 1.53000 * 109.46921 * 185.63459 * 3 2 1 6 6 C 1.50697 * 109.47086 * 64.99900 * 5 3 2 7 7 O 1.21296 * 120.00012 * 359.97438 * 6 5 3 8 8 N 1.34772 * 119.99988 * 179.97438 * 6 5 3 9 9 C 1.40088 * 120.00267 * 175.23439 * 8 6 5 10 10 C 1.38711 * 120.07240 * 34.09864 * 9 8 6 11 11 C 1.38190 * 120.01799 * 179.69710 * 10 9 8 12 12 C 1.38560 * 120.17433 * 0.60230 * 11 10 9 13 13 F 1.35098 * 119.91973 * 179.69896 * 12 11 10 14 14 C 1.38335 * 120.15513 * 359.67504 * 12 11 10 15 15 C 1.38748 * 119.97801 * 0.02562 * 14 12 11 16 16 O 1.35767 * 120.08708 * 179.97438 * 15 14 12 17 17 C 1.34807 * 116.99967 * 6.07344 * 16 15 14 18 18 H 1.07999 * 120.00499 * 5.37702 * 17 16 15 19 19 C 1.38644 * 119.99674 * 185.37800 * 17 16 15 20 20 N 1.31565 * 120.00086 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47266 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47216 * 120.00409 * 21 19 17 24 24 H 1.48505 * 109.47568 * 240.00222 * 21 19 17 25 25 C 1.53004 * 109.47071 * 65.63337 * 3 2 1 26 26 C 1.52996 * 109.46937 * 184.83151 * 25 3 2 27 27 C 1.53000 * 109.47080 * 64.83427 * 25 3 2 28 28 H 1.08999 * 109.47849 * 184.73289 * 1 2 3 29 29 H 1.09001 * 109.47446 * 304.73714 * 1 2 3 30 30 H 1.09003 * 109.47091 * 64.72720 * 1 2 3 31 31 H 1.08994 * 109.47142 * 239.99932 * 2 1 3 32 32 H 1.09000 * 109.46664 * 119.99382 * 2 1 3 33 33 H 1.09006 * 109.46917 * 185.00087 * 5 3 2 34 34 H 1.09001 * 109.46980 * 304.99537 * 5 3 2 35 35 H 0.97000 * 120.00070 * 355.23643 * 8 6 5 36 36 H 1.07992 * 119.98988 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.91736 * 180.29406 * 11 10 9 38 38 H 1.07995 * 120.01366 * 180.02562 * 14 12 11 39 39 H 0.97002 * 120.00087 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.47044 * 304.83819 * 25 3 2 41 41 H 1.09003 * 109.47068 * 174.81821 * 26 25 3 42 42 H 1.08992 * 109.47357 * 294.82233 * 26 25 3 43 43 H 1.09004 * 109.46976 * 54.82362 * 26 25 3 44 44 H 1.08999 * 109.47139 * 179.97438 * 27 25 3 45 45 H 1.08997 * 109.47209 * 300.00144 * 27 25 3 46 46 H 1.09000 * 109.47175 * 59.99566 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5634 1.4448 -0.1416 6 6 3.9435 0.8875 -1.4892 7 8 3.0807 0.5238 -2.2603 8 7 5.2420 0.7932 -1.8376 9 6 5.6002 0.1841 -3.0472 10 6 4.7785 0.3078 -4.1578 11 6 5.1361 -0.2883 -5.3522 12 6 6.3088 -1.0210 -5.4412 13 9 6.6504 -1.6066 -6.6098 14 6 7.1308 -1.1537 -4.3365 15 6 6.7811 -0.5528 -3.1359 16 8 7.5859 -0.6821 -2.0502 17 6 8.7699 -1.2992 -2.2361 18 1 9.0787 -1.5870 -3.2301 19 6 9.5912 -1.5645 -1.1510 20 7 9.2148 -1.2145 0.0600 21 14 11.2315 -2.4203 -1.4085 22 1 11.4186 -2.7075 -2.8534 23 1 12.3290 -1.5402 -0.9330 24 1 11.2513 -3.6932 -0.6437 25 6 1.6489 2.1218 1.3140 26 6 2.0523 3.5968 1.2654 27 6 2.3675 1.4346 2.4769 28 1 -0.3635 -1.0241 0.0848 29 1 -0.3634 0.5856 0.8445 30 1 -0.3633 0.4387 -0.9293 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.9351 2.4656 -0.0526 34 1 4.0022 0.8287 0.6433 35 1 5.9285 1.1471 -1.2508 36 1 3.8613 0.8737 -4.0904 37 1 4.4975 -0.1870 -6.2172 38 1 8.0445 -1.7250 -4.4086 39 1 9.7892 -1.4004 0.8192 40 1 0.5710 2.0442 1.4563 41 1 1.6923 4.1016 2.1619 42 1 3.1383 3.6750 1.2157 43 1 1.6135 4.0646 0.3841 44 1 2.0892 1.9187 3.4130 45 1 2.0802 0.3837 2.5115 46 1 3.4454 1.5119 2.3346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120783719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:53 Heat of formation + Delta-G solvation = -122.897433 kcal Electronic energy + Delta-G solvation = -27744.965939 eV Core-core repulsion = 23741.489151 eV Total energy + Delta-G solvation = -4003.476788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 5.42 seconds Orbital eigenvalues (eV) -49.85230 -41.72638 -40.48095 -38.79067 -37.83089 -35.53503 -34.32104 -33.17519 -31.69926 -30.98501 -29.56293 -27.98408 -27.41091 -25.84432 -24.05299 -23.21702 -23.10812 -21.52280 -20.16268 -19.73081 -19.29367 -18.43196 -18.13260 -17.06429 -16.95442 -16.61566 -16.28836 -16.08333 -15.93833 -15.84216 -15.44610 -15.29835 -15.02432 -14.71184 -14.47008 -14.14610 -14.11556 -13.88418 -13.72946 -13.59105 -13.43212 -13.03573 -12.87007 -12.60668 -12.53643 -12.33125 -12.27529 -12.13093 -12.06906 -11.87895 -11.68500 -11.30285 -11.19931 -11.14097 -11.06113 -10.84262 -10.52044 -9.57578 -8.77733 -8.52290 -6.18422 0.17189 0.44577 1.36855 1.42322 1.52746 1.63063 2.11514 2.20480 2.65966 3.02326 3.17136 3.43605 3.66456 3.83767 3.90239 3.94317 4.11526 4.18513 4.34545 4.35864 4.39585 4.47738 4.61440 4.62393 4.64739 4.84406 4.85479 4.89422 4.93421 4.96713 5.01966 5.10573 5.16640 5.21098 5.22362 5.23858 5.30528 5.33578 5.38214 5.41136 5.52864 5.56839 5.59864 5.70671 5.92026 6.03159 6.52639 6.92430 7.19901 7.61091 8.68410 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.003802 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.962332 B = 7362.489223 C = 9332.968676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C -0.057 4.057 4 H 0.069 0.931 5 C -0.133 4.133 6 C 0.508 3.492 7 O -0.553 6.553 8 N -0.656 5.656 9 C 0.060 3.940 10 C -0.052 4.052 11 C -0.206 4.206 12 C 0.122 3.878 13 F -0.145 7.145 14 C -0.266 4.266 15 C 0.131 3.869 16 O -0.201 6.201 17 C -0.416 4.416 18 H 0.098 0.902 19 C -0.007 4.007 20 N -0.904 5.904 21 Si 1.011 2.989 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.270 1.270 25 C -0.087 4.087 26 C -0.151 4.151 27 C -0.155 4.155 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.416 0.584 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.134 0.866 39 H 0.275 0.725 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.040 7.331 2.360 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C -0.076 4.076 4 H 0.088 0.912 5 C -0.172 4.172 6 C 0.299 3.701 7 O -0.432 6.432 8 N -0.300 5.300 9 C -0.035 4.035 10 C -0.072 4.072 11 C -0.225 4.225 12 C 0.102 3.898 13 F -0.124 7.124 14 C -0.287 4.287 15 C 0.077 3.923 16 O -0.106 6.106 17 C -0.492 4.492 18 H 0.115 0.885 19 C -0.207 4.207 20 N -0.540 5.540 21 Si 0.831 3.169 22 H -0.181 1.181 23 H -0.191 1.191 24 H -0.195 1.195 25 C -0.105 4.105 26 C -0.208 4.208 27 C -0.212 4.212 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.252 0.748 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.152 0.848 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.602 7.127 2.295 14.659 hybrid contribution 1.506 -0.720 -0.132 1.675 sum -11.096 6.407 2.163 12.994 Atomic orbital electron populations 1.21733 0.94968 1.01526 1.01867 1.21715 0.96902 0.96688 1.01444 1.20911 0.91870 0.96460 0.98343 0.91233 1.21921 0.99215 1.03882 0.92180 1.21501 0.80955 0.77552 0.90139 1.90592 1.49114 1.49696 1.53822 1.43388 1.09101 1.57641 1.19876 1.17201 0.95489 1.02400 0.88397 1.20889 0.98938 0.98302 0.89086 1.20896 0.97412 1.04214 1.00026 1.17475 0.95242 0.96376 0.80737 1.91426 1.92466 1.82482 1.46013 1.20938 1.04391 1.10360 0.92977 1.19208 0.91491 0.93692 0.87914 1.83915 1.27898 1.69214 1.29572 1.21767 0.92267 1.39077 0.96108 0.88501 1.26359 1.03214 0.97394 0.93734 1.70121 1.39163 1.45298 0.99425 0.84630 0.75274 0.77720 0.79308 1.18111 1.19071 1.19488 1.21150 1.00864 0.95137 0.93349 1.21916 1.01728 0.95061 1.02082 1.21989 1.00664 1.00546 0.98033 0.93107 0.91268 0.93344 0.93219 0.92213 0.86473 0.88018 0.74772 0.82719 0.82549 0.84800 0.91573 0.89972 0.91817 0.92427 0.92615 0.91848 0.92816 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.79 71.98 0.70 -2.20 16 2 C -0.13 -3.15 5.06 30.60 0.15 -3.00 16 3 C -0.06 -1.22 1.27 -10.79 -0.01 -1.23 16 4 H 0.07 1.62 7.96 -2.39 -0.02 1.60 16 5 C -0.13 -3.11 4.38 29.85 0.13 -2.98 16 6 C 0.51 16.31 7.35 87.66 0.64 16.96 16 7 O -0.55 -20.00 11.37 -3.08 -0.03 -20.04 16 8 N -0.66 -23.65 5.19 -303.04 -1.57 -25.22 16 9 C 0.06 2.47 6.34 38.23 0.24 2.72 16 10 C -0.05 -1.91 8.70 22.37 0.19 -1.71 16 11 C -0.21 -7.17 10.02 22.34 0.22 -6.95 16 12 C 0.12 4.74 7.29 22.37 0.16 4.90 16 13 F -0.15 -5.35 17.26 44.97 0.78 -4.58 16 14 C -0.27 -11.78 9.10 22.41 0.20 -11.57 16 15 C 0.13 6.14 6.66 22.69 0.15 6.29 16 16 O -0.20 -10.84 9.31 -22.69 -0.21 -11.05 16 17 C -0.42 -22.57 9.44 67.92 0.64 -21.93 16 18 H 0.10 4.97 5.30 -2.91 -0.02 4.96 16 19 C -0.01 -0.37 5.49 84.83 0.47 0.09 16 20 N -0.90 -50.46 13.67 21.61 0.30 -50.17 16 21 Si 1.01 40.57 29.55 68.60 2.03 42.59 16 22 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 C -0.09 -1.42 2.57 -10.79 -0.03 -1.45 16 26 C -0.15 -2.19 8.82 71.98 0.63 -1.55 16 27 C -0.16 -2.58 8.47 71.98 0.61 -1.97 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.14 6.29 -2.39 -0.02 1.12 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.55 5.87 -2.39 -0.01 1.53 16 32 H 0.06 1.40 6.31 -2.39 -0.02 1.39 16 33 H 0.12 2.22 6.45 -2.38 -0.02 2.21 16 34 H 0.10 2.39 6.65 -2.39 -0.02 2.37 16 35 H 0.42 14.54 8.56 -92.71 -0.79 13.74 16 36 H 0.16 5.37 6.14 -2.91 -0.02 5.35 16 37 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 38 H 0.13 6.05 5.72 -2.91 -0.02 6.03 16 39 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.08 1.25 6.29 -2.39 -0.02 1.23 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.84 6.71 -2.39 -0.02 0.82 16 43 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 0.94 6.44 -2.39 -0.02 0.93 16 46 H 0.05 0.97 6.46 -2.39 -0.02 0.96 16 Total: -1.00 -62.70 366.68 6.63 -56.07 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.23 Total: 37.96 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 5.12 Total: -25.58 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.28 Total: -75.39 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.25 Total: -31.09 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.58 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Total: -62.70 6.63 -56.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120783719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.825 kcal (2) G-P(sol) polarization free energy of solvation -62.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.42 seconds