Wall clock time and date at job start Tue Mar 31 2020 14:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47421 * 2 1 4 4 H 1.09002 * 109.46667 * 304.87394 * 3 2 1 5 5 C 1.52999 * 109.47236 * 64.87285 * 3 2 1 6 6 C 1.50701 * 109.46933 * 186.19384 * 5 3 2 7 7 O 1.21278 * 120.00039 * 356.97574 * 6 5 3 8 8 N 1.34778 * 119.99915 * 176.97452 * 6 5 3 9 9 C 1.37139 * 119.99580 * 5.90634 * 8 6 5 10 10 H 1.07999 * 120.00147 * 48.36313 * 9 8 6 11 11 C 1.38898 * 119.99714 * 228.35419 * 9 8 6 12 12 N 1.31424 * 120.00070 * 8.90302 * 11 9 8 13 13 Si 1.86797 * 119.99714 * 188.89928 * 11 9 8 14 14 H 1.48501 * 109.47357 * 90.00683 * 13 11 9 15 15 H 1.48506 * 109.47172 * 210.00310 * 13 11 9 16 16 H 1.48497 * 109.47384 * 330.00262 * 13 11 9 17 17 C 1.39790 * 120.00081 * 185.91224 * 8 6 5 18 18 C 1.38963 * 120.07526 * 7.46218 * 17 8 6 19 19 C 1.38082 * 119.91800 * 179.79577 * 18 17 8 20 20 C 1.38304 * 120.07925 * 0.45910 * 19 18 17 21 21 C 1.38308 * 120.15566 * 359.79744 * 20 19 18 22 22 C 1.38077 * 120.07977 * 359.96977 * 21 20 19 23 23 C 1.50701 * 109.46823 * 184.87910 * 3 2 1 24 24 C 1.38235 * 119.99962 * 299.71995 * 23 3 2 25 25 C 1.38229 * 119.99910 * 179.81666 * 24 23 3 26 26 C 1.38235 * 120.00067 * 0.39282 * 25 24 23 27 27 C 1.38237 * 120.00092 * 359.86450 * 26 25 24 28 28 C 1.38231 * 119.99885 * 120.00067 * 23 3 2 29 29 H 1.09011 * 109.46799 * 63.36277 * 1 2 3 30 30 H 1.08996 * 109.47471 * 183.35712 * 1 2 3 31 31 H 1.09001 * 109.47290 * 303.36535 * 1 2 3 32 32 H 1.09001 * 109.47484 * 239.99163 * 2 1 3 33 33 H 1.09008 * 109.46415 * 119.99541 * 2 1 3 34 34 H 1.08997 * 109.47248 * 306.19670 * 5 3 2 35 35 H 1.09001 * 109.46564 * 66.20085 * 5 3 2 36 36 H 0.96993 * 119.99848 * 184.98314 * 12 11 9 37 37 H 1.07999 * 120.04090 * 0.02562 * 18 17 8 38 38 H 1.08004 * 119.96044 * 180.25191 * 19 18 17 39 39 H 1.07998 * 119.92407 * 179.76329 * 20 19 18 40 40 H 1.08003 * 119.96349 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.04309 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.99805 * 0.02562 * 24 23 3 43 43 H 1.08002 * 120.00212 * 180.23549 * 25 24 23 44 44 H 1.07998 * 120.00095 * 179.83495 * 26 25 24 45 45 H 1.07998 * 120.00464 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.99972 * 359.97210 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6072 1.9809 -0.8431 5 6 1.6326 2.1276 1.3060 6 6 2.0005 3.5876 1.2433 7 8 2.5850 4.0247 0.2747 8 7 1.6799 4.4077 2.2637 9 6 1.1287 3.8936 3.4093 10 1 1.5775 3.0348 3.8863 11 6 -0.0067 4.4775 3.9564 12 7 -0.6540 5.4066 3.2895 13 14 -0.6135 3.9419 5.6399 14 1 0.0206 4.7842 6.6857 15 1 -2.0889 4.0970 5.7067 16 1 -0.2548 2.5187 5.8657 17 6 1.9092 5.7823 2.1542 18 6 2.3209 6.3254 0.9431 19 6 2.5424 7.6842 0.8374 20 6 2.3641 8.5032 1.9375 21 6 1.9595 7.9654 3.1458 22 6 1.7315 6.6082 3.2575 23 6 3.5422 1.4441 -0.1208 24 6 4.3138 0.8220 0.8428 25 6 5.6915 0.8202 0.7300 26 6 6.2980 1.4474 -0.3423 27 6 5.5266 2.0740 -1.3031 28 6 4.1487 2.0725 -1.1923 29 1 -0.3633 0.4608 -0.9187 30 1 -0.3634 -1.0258 0.0602 31 1 -0.3634 0.5652 0.8583 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5563 2.0298 1.4471 35 1 2.1528 1.6573 2.1405 36 1 -1.4034 5.8654 3.7004 37 1 2.4640 5.6859 0.0846 38 1 2.8585 8.1075 -0.1046 39 1 2.5417 9.5651 1.8530 40 1 1.8215 8.6078 4.0030 41 1 1.4160 6.1888 4.2015 42 1 3.8400 0.3346 1.6821 43 1 6.2942 0.3309 1.4809 44 1 7.3745 1.4482 -0.4290 45 1 6.0004 2.5644 -2.1406 46 1 3.5460 2.5620 -1.9430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171463607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:04 Heat of formation + Delta-G solvation = 21.183057 kcal Electronic energy + Delta-G solvation = -27765.274454 eV Core-core repulsion = 24198.814690 eV Total energy + Delta-G solvation = -3566.459764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -39.94418 -38.94307 -37.20134 -35.50930 -34.89668 -31.89614 -30.82426 -30.52749 -29.71251 -29.49731 -27.88021 -25.27280 -24.79703 -22.47385 -21.81079 -21.61976 -21.16558 -19.73362 -19.02707 -17.65867 -16.61542 -16.18228 -15.50670 -15.31999 -15.03724 -14.81354 -14.29228 -14.16735 -14.00322 -13.67516 -13.20844 -13.19110 -13.01709 -12.84004 -12.57100 -12.34341 -12.08468 -11.93066 -11.76936 -11.61463 -11.45585 -11.24891 -11.12506 -11.04429 -10.87056 -10.74686 -10.60785 -10.46620 -10.23677 -10.09719 -9.97665 -9.27701 -8.74062 -8.52566 -8.36513 -8.01629 -7.73089 -6.88448 -6.25938 -4.44832 1.75270 1.81316 2.49885 2.63149 3.03009 3.11751 3.13511 3.80836 3.96775 4.17656 4.51625 4.78884 4.96756 5.13687 5.23244 5.26887 5.31545 5.37698 5.43489 5.63419 5.73751 5.81428 5.87820 5.90098 5.92443 5.97758 6.03765 6.13361 6.20231 6.21890 6.29310 6.32377 6.39137 6.43792 6.60237 6.63468 6.75013 6.79600 6.83923 6.87011 6.96883 7.11859 7.19018 7.26186 7.39863 7.55742 7.67588 7.70874 7.83293 8.08398 8.47581 8.87855 9.30452 9.67906 10.49892 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.005253 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.573155 B = 5329.205485 C = 6864.203911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.038 4.038 4 H 0.082 0.918 5 C -0.112 4.112 6 C 0.489 3.511 7 O -0.559 6.559 8 N -0.387 5.387 9 C -0.364 4.364 10 H 0.093 0.907 11 C 0.053 3.947 12 N -0.839 5.839 13 Si 0.913 3.087 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.266 1.266 17 C 0.194 3.806 18 C -0.183 4.183 19 C -0.120 4.120 20 C -0.176 4.176 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.051 4.051 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.085 4.085 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.274 0.726 37 H 0.166 0.834 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -7.508 -3.720 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C -0.057 4.057 4 H 0.100 0.900 5 C -0.152 4.152 6 C 0.282 3.718 7 O -0.443 6.443 8 N -0.094 5.094 9 C -0.491 4.491 10 H 0.110 0.890 11 C -0.157 4.157 12 N -0.471 5.471 13 Si 0.738 3.262 14 H -0.199 1.199 15 H -0.206 1.206 16 H -0.190 1.190 17 C 0.097 3.903 18 C -0.203 4.203 19 C -0.139 4.139 20 C -0.196 4.196 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.051 4.051 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.151 4.151 27 C -0.143 4.143 28 C -0.103 4.103 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.183 0.817 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.919 -7.321 -4.199 9.768 hybrid contribution -0.573 0.187 1.205 1.347 sum 4.347 -7.133 -2.994 8.874 Atomic orbital electron populations 1.21866 0.95724 1.01279 1.02505 1.21552 0.95858 0.95740 1.01845 1.20071 0.91203 0.95578 0.98831 0.89969 1.21532 1.03490 0.92947 0.97182 1.20809 0.80289 0.88989 0.81751 1.90272 1.43776 1.76383 1.33824 1.41090 1.51176 1.03202 1.13960 1.19339 1.08795 1.17602 1.03369 0.88963 1.25527 0.94593 0.96243 0.99299 1.70010 1.18789 1.22459 1.35830 0.86146 0.78273 0.79682 0.82088 1.19879 1.20587 1.18991 1.18108 0.94251 0.84728 0.93222 1.22409 1.03224 0.95568 0.99093 1.20808 1.01886 0.93855 0.97377 1.20717 1.06448 0.98195 0.94206 1.20703 1.01645 0.94902 0.96885 1.20789 1.00526 0.92390 0.98743 1.19731 0.95166 0.95967 0.94194 1.20950 0.93675 1.00441 0.98784 1.20990 0.94749 1.00554 0.98129 1.20993 0.99175 0.99555 0.95403 1.21059 0.94146 0.99925 0.99174 1.20961 0.94243 0.97228 0.97917 0.92810 0.93082 0.91758 0.92103 0.91909 0.88419 0.89841 0.91572 0.81705 0.87950 0.88364 0.88009 0.85961 0.86588 0.86834 0.86969 0.86801 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.75 37.16 0.36 -1.53 16 2 C -0.11 -1.42 5.15 -26.73 -0.14 -1.56 16 3 C -0.04 -0.59 1.69 -91.77 -0.16 -0.75 16 4 H 0.08 1.37 7.69 -51.93 -0.40 0.97 16 5 C -0.11 -2.04 3.77 -27.88 -0.11 -2.15 16 6 C 0.49 11.08 7.32 -10.98 -0.08 11.00 16 7 O -0.56 -13.06 10.67 5.56 0.06 -13.00 16 8 N -0.39 -9.56 2.70 -58.97 -0.16 -9.72 16 9 C -0.36 -8.78 7.70 -14.93 -0.11 -8.90 16 10 H 0.09 2.12 7.53 -52.49 -0.40 1.72 16 11 C 0.05 1.27 3.58 -17.48 -0.06 1.21 16 12 N -0.84 -21.61 11.20 55.49 0.62 -20.99 16 13 Si 0.91 18.49 29.56 -169.99 -5.03 13.46 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 16 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 17 C 0.19 4.91 5.73 -83.69 -0.48 4.43 16 18 C -0.18 -4.42 8.98 -39.37 -0.35 -4.78 16 19 C -0.12 -2.58 10.04 -39.61 -0.40 -2.98 16 20 C -0.18 -3.62 10.04 -39.53 -0.40 -4.02 16 21 C -0.12 -2.64 10.04 -39.61 -0.40 -3.04 16 22 C -0.10 -2.51 7.59 -39.37 -0.30 -2.81 16 23 C -0.05 -0.81 3.75 -104.63 -0.39 -1.21 16 24 C -0.12 -1.82 8.69 -39.59 -0.34 -2.17 16 25 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 26 C -0.13 -1.86 10.05 -39.58 -0.40 -2.25 16 27 C -0.12 -1.84 10.05 -39.58 -0.40 -2.23 16 28 C -0.09 -1.38 8.63 -39.58 -0.34 -1.72 16 29 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.84 6.29 -51.93 -0.33 0.52 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.75 7.58 -51.92 -0.39 0.36 16 34 H 0.10 1.79 6.18 -51.93 -0.32 1.47 16 35 H 0.08 1.46 6.89 -51.93 -0.36 1.10 16 36 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 37 H 0.17 4.08 4.72 -55.22 -0.26 3.82 16 38 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 41 H 0.12 3.05 5.69 -52.49 -0.30 2.75 16 42 H 0.12 1.59 7.13 -52.48 -0.37 1.22 16 43 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 44 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.12 1.87 7.95 -52.49 -0.42 1.46 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -27.81 366.78 -10.35 -38.16 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -6.49 Total: 14.18 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -4.89 Total: -27.62 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.46 Total: -30.71 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.06 Total: -13.00 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.81 -10.35 -38.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171463607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.347 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds