Wall clock time and date at job start Tue Mar 31 2020 14:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47421 * 2 1 4 4 H 1.09002 * 109.46667 * 304.87394 * 3 2 1 5 5 C 1.52999 * 109.47236 * 64.87285 * 3 2 1 6 6 C 1.50701 * 109.46933 * 186.19384 * 5 3 2 7 7 O 1.21278 * 120.00039 * 356.97574 * 6 5 3 8 8 N 1.34778 * 119.99915 * 176.97452 * 6 5 3 9 9 C 1.37139 * 119.99580 * 5.90634 * 8 6 5 10 10 H 1.07999 * 120.00147 * 48.36313 * 9 8 6 11 11 C 1.38898 * 119.99714 * 228.35419 * 9 8 6 12 12 N 1.31424 * 120.00070 * 8.90302 * 11 9 8 13 13 Si 1.86797 * 119.99714 * 188.89928 * 11 9 8 14 14 H 1.48501 * 109.47357 * 90.00683 * 13 11 9 15 15 H 1.48506 * 109.47172 * 210.00310 * 13 11 9 16 16 H 1.48497 * 109.47384 * 330.00262 * 13 11 9 17 17 C 1.39790 * 120.00081 * 185.91224 * 8 6 5 18 18 C 1.38963 * 120.07526 * 7.46218 * 17 8 6 19 19 C 1.38082 * 119.91800 * 179.79577 * 18 17 8 20 20 C 1.38304 * 120.07925 * 0.45910 * 19 18 17 21 21 C 1.38308 * 120.15566 * 359.79744 * 20 19 18 22 22 C 1.38077 * 120.07977 * 359.96977 * 21 20 19 23 23 C 1.50701 * 109.46823 * 184.87910 * 3 2 1 24 24 C 1.38235 * 119.99962 * 299.71995 * 23 3 2 25 25 C 1.38229 * 119.99910 * 179.81666 * 24 23 3 26 26 C 1.38235 * 120.00067 * 0.39282 * 25 24 23 27 27 C 1.38237 * 120.00092 * 359.86450 * 26 25 24 28 28 C 1.38231 * 119.99885 * 120.00067 * 23 3 2 29 29 H 1.09011 * 109.46799 * 63.36277 * 1 2 3 30 30 H 1.08996 * 109.47471 * 183.35712 * 1 2 3 31 31 H 1.09001 * 109.47290 * 303.36535 * 1 2 3 32 32 H 1.09001 * 109.47484 * 239.99163 * 2 1 3 33 33 H 1.09008 * 109.46415 * 119.99541 * 2 1 3 34 34 H 1.08997 * 109.47248 * 306.19670 * 5 3 2 35 35 H 1.09001 * 109.46564 * 66.20085 * 5 3 2 36 36 H 0.96993 * 119.99848 * 184.98314 * 12 11 9 37 37 H 1.07999 * 120.04090 * 0.02562 * 18 17 8 38 38 H 1.08004 * 119.96044 * 180.25191 * 19 18 17 39 39 H 1.07998 * 119.92407 * 179.76329 * 20 19 18 40 40 H 1.08003 * 119.96349 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.04309 * 179.97438 * 22 21 20 42 42 H 1.08004 * 119.99805 * 0.02562 * 24 23 3 43 43 H 1.08002 * 120.00212 * 180.23549 * 25 24 23 44 44 H 1.07998 * 120.00095 * 179.83495 * 26 25 24 45 45 H 1.07998 * 120.00464 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.99972 * 359.97210 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6072 1.9809 -0.8431 5 6 1.6326 2.1276 1.3060 6 6 2.0005 3.5876 1.2433 7 8 2.5850 4.0247 0.2747 8 7 1.6799 4.4077 2.2637 9 6 1.1287 3.8936 3.4093 10 1 1.5775 3.0348 3.8863 11 6 -0.0067 4.4775 3.9564 12 7 -0.6540 5.4066 3.2895 13 14 -0.6135 3.9419 5.6399 14 1 0.0206 4.7842 6.6857 15 1 -2.0889 4.0970 5.7067 16 1 -0.2548 2.5187 5.8657 17 6 1.9092 5.7823 2.1542 18 6 2.3209 6.3254 0.9431 19 6 2.5424 7.6842 0.8374 20 6 2.3641 8.5032 1.9375 21 6 1.9595 7.9654 3.1458 22 6 1.7315 6.6082 3.2575 23 6 3.5422 1.4441 -0.1208 24 6 4.3138 0.8220 0.8428 25 6 5.6915 0.8202 0.7300 26 6 6.2980 1.4474 -0.3423 27 6 5.5266 2.0740 -1.3031 28 6 4.1487 2.0725 -1.1923 29 1 -0.3633 0.4608 -0.9187 30 1 -0.3634 -1.0258 0.0602 31 1 -0.3634 0.5652 0.8583 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5563 2.0298 1.4471 35 1 2.1528 1.6573 2.1405 36 1 -1.4034 5.8654 3.7004 37 1 2.4640 5.6859 0.0846 38 1 2.8585 8.1075 -0.1046 39 1 2.5417 9.5651 1.8530 40 1 1.8215 8.6078 4.0030 41 1 1.4160 6.1888 4.2015 42 1 3.8400 0.3346 1.6821 43 1 6.2942 0.3309 1.4809 44 1 7.3745 1.4482 -0.4290 45 1 6.0004 2.5644 -2.1406 46 1 3.5460 2.5620 -1.9430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171463607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:02 Heat of formation + Delta-G solvation = 10.849971 kcal Electronic energy + Delta-G solvation = -27765.722530 eV Core-core repulsion = 24198.814690 eV Total energy + Delta-G solvation = -3566.907840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.57905 -40.26870 -38.83498 -36.87771 -36.56438 -33.73385 -31.94401 -31.67242 -31.37082 -31.14572 -29.38542 -27.04038 -26.12822 -23.62083 -23.43421 -22.89652 -22.77209 -21.29835 -20.50870 -19.36868 -17.89925 -17.76044 -17.27404 -16.93829 -16.39163 -16.30715 -15.76273 -15.68036 -15.22062 -15.01757 -14.79413 -14.63292 -14.43225 -14.13455 -14.08806 -13.85989 -13.55952 -13.37834 -13.22977 -13.02720 -12.92805 -12.79621 -12.68074 -12.44940 -12.36200 -12.09423 -11.99378 -11.74839 -11.66588 -11.46823 -11.25834 -11.06432 -10.54111 -9.94823 -9.66578 -9.50078 -9.37574 -8.70829 -8.07445 -6.32880 0.60330 0.65284 0.75685 0.85036 1.42026 1.45449 1.55653 2.07890 2.26933 2.86065 2.99051 3.01570 3.43453 3.79511 3.93053 4.05727 4.23248 4.24406 4.32057 4.33373 4.36292 4.42907 4.54966 4.56292 4.60865 4.65262 4.75101 4.84132 4.87214 4.96864 5.02695 5.04488 5.11808 5.17372 5.20673 5.26997 5.29423 5.36983 5.41806 5.45498 5.52683 5.70025 5.72268 5.81846 5.90181 5.92183 5.93213 6.08425 6.26647 6.27444 6.66265 7.04758 7.51220 7.88339 8.68330 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.005253 C = 0.004078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.573155 B = 5329.205485 C = 6864.203911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.030 4.030 4 H 0.062 0.938 5 C -0.100 4.100 6 C 0.475 3.525 7 O -0.572 6.572 8 N -0.403 5.403 9 C -0.373 4.373 10 H 0.100 0.900 11 C 0.019 3.981 12 N -0.875 5.875 13 Si 0.976 3.024 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.251 1.251 17 C 0.165 3.835 18 C -0.209 4.209 19 C -0.121 4.121 20 C -0.170 4.170 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.066 4.066 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.137 4.137 27 C -0.134 4.134 28 C -0.109 4.109 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.272 0.728 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 -7.939 -2.882 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.049 4.049 4 H 0.081 0.919 5 C -0.139 4.139 6 C 0.268 3.732 7 O -0.456 6.456 8 N -0.112 5.112 9 C -0.500 4.500 10 H 0.117 0.883 11 C -0.188 4.188 12 N -0.508 5.508 13 Si 0.799 3.201 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.175 1.175 17 C 0.068 3.932 18 C -0.229 4.229 19 C -0.139 4.139 20 C -0.189 4.189 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.066 4.066 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.128 4.128 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.169 0.831 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.126 0.874 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.876 -7.768 -3.371 10.307 hybrid contribution -0.789 0.402 0.877 1.247 sum 5.086 -7.365 -2.494 9.292 Atomic orbital electron populations 1.21855 0.95314 1.02367 1.01700 1.21503 0.96104 0.93613 1.02913 1.19992 0.91434 0.96987 0.96470 0.91945 1.21497 1.03143 0.90315 0.98980 1.21579 0.79779 0.90528 0.81270 1.90253 1.44164 1.77044 1.34147 1.41382 1.51664 1.03449 1.14657 1.19631 1.08973 1.17862 1.03566 0.88293 1.26255 0.94299 0.95864 1.02342 1.70136 1.19369 1.23883 1.37431 0.85180 0.77252 0.79924 0.77770 1.19756 1.20900 1.17491 1.18478 0.95233 0.85459 0.94035 1.22454 1.04942 0.96996 0.98547 1.21173 1.00745 0.92884 0.99127 1.21129 1.04631 1.00058 0.93095 1.21084 1.00471 0.94173 0.98515 1.20814 1.01976 0.93710 0.97991 1.19823 0.95264 0.96697 0.94778 1.21173 0.94406 1.00623 0.98887 1.21366 0.94626 1.00125 0.98673 1.21365 1.00636 0.98654 0.94812 1.21342 0.93686 1.00007 1.00129 1.21062 0.95191 0.98165 0.98338 0.93148 0.90911 0.93141 0.90993 0.90762 0.88870 0.89006 0.91834 0.83063 0.85095 0.84347 0.85218 0.87427 0.85433 0.84251 0.84204 0.85077 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.75 71.98 0.70 -2.95 16 2 C -0.10 -2.55 5.15 30.59 0.16 -2.39 16 3 C -0.03 -0.95 1.69 -11.54 -0.02 -0.97 16 4 H 0.06 2.21 7.69 -2.39 -0.02 2.19 16 5 C -0.10 -3.73 3.77 29.85 0.11 -3.62 16 6 C 0.48 22.35 7.32 87.66 0.64 23.00 16 7 O -0.57 -27.97 10.67 -3.02 -0.03 -28.01 16 8 N -0.40 -20.60 2.70 -458.89 -1.24 -21.84 16 9 C -0.37 -18.38 7.70 84.02 0.65 -17.74 16 10 H 0.10 4.58 7.53 -2.91 -0.02 4.56 16 11 C 0.02 0.90 3.58 84.91 0.30 1.21 16 12 N -0.88 -46.15 11.20 21.65 0.24 -45.91 16 13 Si 0.98 37.91 29.56 68.60 2.03 39.94 16 14 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 15 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 16 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 17 C 0.17 8.60 5.73 38.22 0.22 8.82 16 18 C -0.21 -10.35 8.98 22.41 0.20 -10.15 16 19 C -0.12 -5.06 10.04 22.25 0.22 -4.84 16 20 C -0.17 -6.60 10.04 22.30 0.22 -6.37 16 21 C -0.12 -5.20 10.04 22.25 0.22 -4.97 16 22 C -0.12 -6.09 7.59 22.40 0.17 -5.92 16 23 C -0.07 -2.13 3.75 -19.87 -0.07 -2.20 16 24 C -0.13 -3.91 8.69 22.27 0.19 -3.71 16 25 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 26 C -0.14 -3.57 10.05 22.27 0.22 -3.35 16 27 C -0.13 -3.87 10.05 22.27 0.22 -3.64 16 28 C -0.11 -3.62 8.63 22.27 0.19 -3.43 16 29 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.32 6.29 -2.39 -0.02 1.31 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.07 1.66 7.58 -2.38 -0.02 1.64 16 34 H 0.09 3.54 6.18 -2.39 -0.01 3.52 16 35 H 0.09 3.23 6.89 -2.39 -0.02 3.21 16 36 H 0.27 13.67 8.32 -92.71 -0.77 12.90 16 37 H 0.15 7.84 4.72 -46.20 -0.22 7.62 16 38 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 39 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.11 5.50 5.69 -2.91 -0.02 5.48 16 42 H 0.13 3.33 7.13 -2.91 -0.02 3.31 16 43 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 45 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 46 H 0.11 3.64 7.95 -2.91 -0.02 3.61 16 Total: -1.00 -61.61 366.78 6.55 -55.05 By element: Atomic # 1 Polarization: 46.46 SS G_CDS: 0.77 Total: 47.22 kcal Atomic # 6 Polarization: -51.25 SS G_CDS: 4.79 Total: -46.46 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -1.00 Total: -67.75 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.03 Total: -28.01 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -61.61 6.55 -55.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171463607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.904 kcal (2) G-P(sol) polarization free energy of solvation -61.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds