Wall clock time and date at job start Tue Mar 31 2020 16:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47261 * 2 1 4 4 O 1.42902 * 109.47251 * 120.00044 * 2 1 3 5 5 C 1.35902 * 116.99811 * 155.05875 * 4 2 1 6 6 C 1.38730 * 120.05805 * 5.46666 * 5 4 2 7 7 C 1.38143 * 119.94478 * 180.02562 * 6 5 4 8 8 C 1.38260 * 120.05555 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.94628 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47018 * 19.99951 * 9 8 7 11 11 C 1.53004 * 109.47058 * 260.00214 * 9 8 7 12 12 N 1.46894 * 109.47297 * 139.99984 * 9 8 7 13 13 C 1.46899 * 111.00000 * 205.00215 * 12 9 8 14 14 C 1.53005 * 109.47182 * 180.02562 * 13 12 9 15 15 C 1.52998 * 109.47228 * 180.02562 * 14 13 12 16 16 S 1.80997 * 109.47293 * 179.97438 * 15 14 13 17 17 C 1.76193 * 100.00288 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99950 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99792 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00053 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47416 * 90.00238 * 21 19 17 23 23 H 1.48507 * 109.47138 * 209.99960 * 21 19 17 24 24 H 1.48497 * 109.47280 * 329.99854 * 21 19 17 25 25 C 1.38270 * 120.11292 * 0.29680 * 8 7 6 26 26 C 1.38146 * 120.05102 * 359.44922 * 25 8 7 27 27 H 1.08999 * 109.46799 * 299.99781 * 1 2 3 28 28 H 1.08996 * 109.46854 * 59.99485 * 1 2 3 29 29 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47270 * 240.00058 * 2 1 3 31 31 H 1.08995 * 109.47481 * 60.00176 * 3 2 1 32 32 H 1.09000 * 109.47502 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47607 * 300.00054 * 3 2 1 34 34 H 1.08003 * 120.02842 * 0.02562 * 6 5 4 35 35 H 1.08003 * 119.97436 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.46992 * 299.99753 * 11 9 8 37 37 H 1.09002 * 109.46979 * 59.99720 * 11 9 8 38 38 H 1.08997 * 109.47056 * 179.97438 * 11 9 8 39 39 H 1.00899 * 111.00018 * 81.04508 * 12 9 8 40 40 H 1.09001 * 109.47184 * 299.99495 * 13 12 9 41 41 H 1.08997 * 109.47094 * 59.99769 * 13 12 9 42 42 H 1.09010 * 109.46480 * 299.99482 * 14 13 12 43 43 H 1.08997 * 109.47406 * 59.99179 * 14 13 12 44 44 H 1.09010 * 109.46588 * 299.98952 * 15 14 13 45 45 H 1.08997 * 109.47450 * 59.99046 * 15 14 13 46 46 H 0.97001 * 119.99976 * 179.97438 * 20 19 17 47 47 H 1.07997 * 119.97424 * 179.70807 * 25 8 7 48 48 H 1.08007 * 120.02334 * 180.25621 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2472 -1.2237 1.0982 6 6 4.0360 -1.0211 -0.0249 7 6 5.2967 -1.5818 -0.0924 8 6 5.7729 -2.3438 0.9584 9 6 7.1488 -2.9538 0.8825 10 1 7.7408 -2.4233 0.1367 11 6 7.0324 -4.4273 0.4873 12 7 7.8041 -2.8486 2.1930 13 6 9.2664 -2.8614 2.0529 14 6 9.9121 -2.7510 3.4356 15 6 11.4351 -2.7637 3.2897 16 16 12.1990 -2.6324 4.9253 17 6 13.9012 -2.6707 4.4720 18 1 14.1814 -2.7553 3.4324 19 6 14.8821 -2.5921 5.4510 20 7 16.1537 -2.6212 5.1123 21 14 14.3974 -2.4450 7.2489 22 1 14.2674 -3.8014 7.8392 23 1 15.4409 -1.6841 7.9822 24 1 13.0989 -1.7324 7.3549 25 6 4.9865 -2.5518 2.0766 26 6 3.7271 -1.9890 2.1511 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 3.6647 -0.4256 -0.8459 35 1 5.9114 -1.4241 -0.9664 36 1 6.4404 -4.9578 1.2331 37 1 6.5461 -4.5053 -0.4852 38 1 8.0276 -4.8683 0.4319 39 1 7.4937 -3.5822 2.8124 40 1 9.5780 -3.7928 1.5802 41 1 9.5797 -2.0186 1.4368 42 1 9.6006 -1.8197 3.9088 43 1 9.5987 -3.5940 4.0514 44 1 11.7470 -3.6949 2.8164 45 1 11.7482 -1.9205 2.6740 46 1 16.8392 -2.5659 5.7964 47 1 5.3588 -3.1513 2.8941 48 1 3.1149 -2.1483 3.0265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179534648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:50 Heat of formation + Delta-G solvation = -38.752716 kcal Electronic energy + Delta-G solvation = -23687.501845 eV Core-core repulsion = 20253.887022 eV Total energy + Delta-G solvation = -3433.614823 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60380 -38.76760 -36.75930 -33.98856 -33.22466 -32.42255 -31.15467 -30.20519 -28.57659 -27.70499 -25.78321 -24.97527 -24.01622 -22.83234 -21.83107 -21.13529 -20.30569 -18.60264 -17.44090 -16.35887 -16.31801 -15.80330 -15.52763 -15.07591 -14.98563 -14.88865 -14.44646 -14.13745 -13.99154 -13.77062 -13.50302 -13.41133 -13.00848 -12.91934 -12.77676 -12.72330 -12.60702 -12.45335 -12.17533 -11.96114 -11.76376 -11.51506 -11.41074 -11.17551 -11.04989 -11.01835 -10.99646 -10.82692 -10.50203 -10.11082 -9.75669 -9.16125 -8.99074 -8.54237 -8.51290 -8.22587 -6.92225 -6.27047 -3.99027 1.17852 1.24446 2.87732 3.02454 3.31310 3.47370 3.52884 3.60606 4.12435 4.29808 4.33346 4.42916 4.55993 4.61590 4.66703 4.69649 4.83187 4.93550 4.99475 5.06078 5.09475 5.11749 5.20805 5.23251 5.25897 5.26811 5.32892 5.43712 5.46205 5.56342 5.59372 5.62331 5.66003 5.70818 5.80724 5.86112 5.87494 6.01069 6.12168 6.17290 6.24257 6.44676 6.51381 6.59581 6.66215 6.99882 7.20655 7.29921 7.96715 8.45471 9.18998 10.82446 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.001746 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.242400 B =16036.103500 C =16455.650143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 C -0.181 4.181 4 O -0.313 6.313 5 C 0.125 3.875 6 C -0.210 4.210 7 C -0.077 4.077 8 C -0.101 4.101 9 C 0.126 3.874 10 H 0.085 0.915 11 C -0.178 4.178 12 N -0.682 5.682 13 C 0.064 3.936 14 C -0.099 4.099 15 C -0.082 4.082 16 S -0.215 6.215 17 C -0.502 4.502 18 H 0.087 0.913 19 C 0.091 3.909 20 N -0.882 5.882 21 Si 0.862 3.138 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.237 1.237 25 C -0.058 4.058 26 C -0.153 4.153 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.340 0.660 40 H 0.031 0.969 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.270 0.730 47 H 0.128 0.872 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.286 2.201 -13.315 34.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.239 4.239 4 O -0.227 6.227 5 C 0.080 3.920 6 C -0.229 4.229 7 C -0.095 4.095 8 C -0.101 4.101 9 C 0.016 3.984 10 H 0.103 0.897 11 C -0.237 4.237 12 N -0.312 5.312 13 C -0.067 4.067 14 C -0.138 4.138 15 C -0.231 4.231 16 S 0.012 5.988 17 C -0.650 4.650 18 H 0.105 0.895 19 C -0.117 4.117 20 N -0.519 5.519 21 Si 0.687 3.313 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.161 1.161 25 C -0.076 4.076 26 C -0.172 4.172 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.146 0.854 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -31.724 2.990 -12.047 34.066 hybrid contribution 0.999 -0.866 -0.867 1.581 sum -30.725 2.124 -12.913 33.396 Atomic orbital electron populations 1.21855 0.92529 1.03139 1.03068 1.22413 0.95330 0.92679 0.87494 1.22393 1.02386 0.95957 1.03142 1.86115 1.29567 1.68333 1.38712 1.18976 0.84580 0.93777 0.94696 1.21185 0.96382 1.06388 0.98926 1.20769 0.94873 0.95800 0.98100 1.19680 0.95794 0.99898 0.94768 1.20373 0.91787 0.94425 0.91858 0.89729 1.22498 1.02166 0.96725 1.02327 1.60579 1.06329 1.53337 1.10967 1.22034 0.86251 1.00326 0.98044 1.21301 0.93313 1.03259 0.95897 1.23005 0.96343 1.03544 1.00168 1.84160 1.07129 1.96915 1.10549 1.22135 0.87329 1.57898 0.97643 0.89466 1.24798 0.94103 0.93384 0.99385 1.69942 0.99305 1.48282 1.34396 0.86665 0.80491 0.79683 0.84476 1.19409 1.20118 1.16126 1.20730 0.92052 0.97646 0.97179 1.20433 0.97227 1.00923 0.98610 0.91429 0.90556 0.91676 0.90967 0.91367 0.91660 0.91069 0.85591 0.86049 0.92205 0.91993 0.92159 0.84102 0.95097 0.90938 0.90618 0.91749 0.91646 0.91378 0.92006 0.85420 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.56 37.16 0.36 -0.39 16 2 C 0.08 0.52 2.85 -26.73 -0.08 0.44 16 3 C -0.18 -1.09 9.17 37.15 0.34 -0.75 16 4 O -0.31 -3.05 9.80 -19.43 -0.19 -3.24 16 5 C 0.12 1.27 6.60 -39.22 -0.26 1.01 16 6 C -0.21 -1.92 8.24 -39.43 -0.33 -2.25 16 7 C -0.08 -0.71 9.66 -39.61 -0.38 -1.10 16 8 C -0.10 -1.00 4.96 -104.60 -0.52 -1.52 16 9 C 0.13 1.20 2.79 -68.86 -0.19 1.01 16 10 H 0.08 0.82 7.66 -51.93 -0.40 0.42 16 11 C -0.18 -1.49 9.14 37.16 0.34 -1.15 16 12 N -0.68 -7.46 5.71 -107.95 -0.62 -8.08 16 13 C 0.06 0.79 5.48 -3.82 -0.02 0.77 16 14 C -0.10 -1.51 5.48 -26.73 -0.15 -1.66 16 15 C -0.08 -1.58 5.67 37.16 0.21 -1.37 16 16 S -0.22 -5.30 19.41 -107.50 -2.09 -7.39 16 17 C -0.50 -14.72 10.04 30.94 0.31 -14.41 16 18 H 0.09 2.72 8.03 -52.49 -0.42 2.29 16 19 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 20 N -0.88 -26.94 13.97 55.49 0.78 -26.17 16 21 Si 0.86 21.74 27.74 -169.99 -4.71 17.03 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 25 C -0.06 -0.57 9.32 -39.60 -0.37 -0.94 16 26 C -0.15 -1.56 9.99 -39.43 -0.39 -1.95 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.43 6.31 -51.93 -0.33 0.11 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 6.91 -51.93 -0.36 0.09 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.13 0.92 5.43 -52.48 -0.28 0.63 16 35 H 0.12 0.92 8.03 -52.48 -0.42 0.50 16 36 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 39 H 0.34 3.41 7.82 -39.29 -0.31 3.10 16 40 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 41 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 42 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 45 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 46 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.13 1.13 7.25 -52.49 -0.38 0.75 16 48 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -31.93 398.32 -10.37 -42.31 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.32 Total: 1.19 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.22 Total: -21.65 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.16 Total: -34.25 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -0.19 Total: -3.24 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -2.09 Total: -7.39 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.93 -10.37 -42.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179534648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.554 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds