Wall clock time and date at job start Tue Mar 31 2020 16:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47261 * 2 1 4 4 O 1.42902 * 109.47251 * 120.00044 * 2 1 3 5 5 C 1.35902 * 116.99811 * 155.05875 * 4 2 1 6 6 C 1.38730 * 120.05805 * 5.46666 * 5 4 2 7 7 C 1.38143 * 119.94478 * 180.02562 * 6 5 4 8 8 C 1.38260 * 120.05555 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.94628 * 180.02562 * 8 7 6 10 10 H 1.08998 * 109.47018 * 19.99951 * 9 8 7 11 11 C 1.53004 * 109.47058 * 260.00214 * 9 8 7 12 12 N 1.46894 * 109.47297 * 139.99984 * 9 8 7 13 13 C 1.46899 * 111.00000 * 205.00215 * 12 9 8 14 14 C 1.53005 * 109.47182 * 180.02562 * 13 12 9 15 15 C 1.52998 * 109.47228 * 180.02562 * 14 13 12 16 16 S 1.80997 * 109.47293 * 179.97438 * 15 14 13 17 17 C 1.76193 * 100.00288 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99950 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99792 * 179.97438 * 19 17 16 21 21 Si 1.86792 * 120.00053 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47416 * 90.00238 * 21 19 17 23 23 H 1.48507 * 109.47138 * 209.99960 * 21 19 17 24 24 H 1.48497 * 109.47280 * 329.99854 * 21 19 17 25 25 C 1.38270 * 120.11292 * 0.29680 * 8 7 6 26 26 C 1.38146 * 120.05102 * 359.44922 * 25 8 7 27 27 H 1.08999 * 109.46799 * 299.99781 * 1 2 3 28 28 H 1.08996 * 109.46854 * 59.99485 * 1 2 3 29 29 H 1.08997 * 109.47179 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47270 * 240.00058 * 2 1 3 31 31 H 1.08995 * 109.47481 * 60.00176 * 3 2 1 32 32 H 1.09000 * 109.47502 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47607 * 300.00054 * 3 2 1 34 34 H 1.08003 * 120.02842 * 0.02562 * 6 5 4 35 35 H 1.08003 * 119.97436 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.46992 * 299.99753 * 11 9 8 37 37 H 1.09002 * 109.46979 * 59.99720 * 11 9 8 38 38 H 1.08997 * 109.47056 * 179.97438 * 11 9 8 39 39 H 1.00899 * 111.00018 * 81.04508 * 12 9 8 40 40 H 1.09001 * 109.47184 * 299.99495 * 13 12 9 41 41 H 1.08997 * 109.47094 * 59.99769 * 13 12 9 42 42 H 1.09010 * 109.46480 * 299.99482 * 14 13 12 43 43 H 1.08997 * 109.47406 * 59.99179 * 14 13 12 44 44 H 1.09010 * 109.46588 * 299.98952 * 15 14 13 45 45 H 1.08997 * 109.47450 * 59.99046 * 15 14 13 46 46 H 0.97001 * 119.99976 * 179.97438 * 20 19 17 47 47 H 1.07997 * 119.97424 * 179.70807 * 25 8 7 48 48 H 1.08007 * 120.02334 * 180.25621 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2472 -1.2237 1.0982 6 6 4.0360 -1.0211 -0.0249 7 6 5.2967 -1.5818 -0.0924 8 6 5.7729 -2.3438 0.9584 9 6 7.1488 -2.9538 0.8825 10 1 7.7408 -2.4233 0.1367 11 6 7.0324 -4.4273 0.4873 12 7 7.8041 -2.8486 2.1930 13 6 9.2664 -2.8614 2.0529 14 6 9.9121 -2.7510 3.4356 15 6 11.4351 -2.7637 3.2897 16 16 12.1990 -2.6324 4.9253 17 6 13.9012 -2.6707 4.4720 18 1 14.1814 -2.7553 3.4324 19 6 14.8821 -2.5921 5.4510 20 7 16.1537 -2.6212 5.1123 21 14 14.3974 -2.4450 7.2489 22 1 14.2674 -3.8014 7.8392 23 1 15.4409 -1.6841 7.9822 24 1 13.0989 -1.7324 7.3549 25 6 4.9865 -2.5518 2.0766 26 6 3.7271 -1.9890 2.1511 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 3.6647 -0.4256 -0.8459 35 1 5.9114 -1.4241 -0.9664 36 1 6.4404 -4.9578 1.2331 37 1 6.5461 -4.5053 -0.4852 38 1 8.0276 -4.8683 0.4319 39 1 7.4937 -3.5822 2.8124 40 1 9.5780 -3.7928 1.5802 41 1 9.5797 -2.0186 1.4368 42 1 9.6006 -1.8197 3.9088 43 1 9.5987 -3.5940 4.0514 44 1 11.7470 -3.6949 2.8164 45 1 11.7482 -1.9205 2.6740 46 1 16.8392 -2.5659 5.7964 47 1 5.3588 -3.1513 2.8941 48 1 3.1149 -2.1483 3.0265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179534648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:49 Heat of formation + Delta-G solvation = -56.496059 kcal Electronic energy + Delta-G solvation = -23688.271254 eV Core-core repulsion = 20253.887022 eV Total energy + Delta-G solvation = -3434.384232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27352 -39.48602 -37.61157 -34.91822 -34.67992 -33.94037 -31.84852 -31.17301 -29.29560 -28.14098 -27.97362 -26.16992 -24.70083 -23.64090 -22.57441 -22.20690 -21.00933 -19.60240 -19.23834 -17.24491 -17.10339 -17.01225 -16.54764 -16.40279 -16.16491 -15.67567 -15.62220 -15.12457 -14.93891 -14.78795 -14.49965 -14.18558 -14.15649 -13.85240 -13.78645 -13.49017 -13.36005 -13.29497 -13.14546 -13.05910 -12.96592 -12.74422 -12.51094 -12.46442 -12.17486 -11.96915 -11.87772 -11.79964 -11.60039 -11.48473 -11.43900 -11.16073 -10.55498 -9.87733 -9.36253 -8.98410 -8.94912 -8.51918 -6.22966 0.46450 0.51326 1.13358 1.32100 1.48488 1.75659 2.25186 2.29402 2.69179 2.81639 2.86176 3.24169 3.81568 3.86945 3.93131 3.97767 4.02047 4.03599 4.14951 4.21485 4.29084 4.29971 4.38545 4.49440 4.51903 4.53094 4.68807 4.69082 4.74990 4.80123 4.81705 4.84734 4.86991 4.93631 4.98581 5.13520 5.19677 5.21404 5.23054 5.25827 5.31104 5.42727 5.47071 5.69471 5.70449 5.90926 6.09797 6.13165 6.48322 6.54975 6.92296 8.61154 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025512 B = 0.001746 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.242400 B =16036.103500 C =16455.650143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 C -0.178 4.178 4 O -0.330 6.330 5 C 0.113 3.887 6 C -0.212 4.212 7 C -0.082 4.082 8 C -0.110 4.110 9 C 0.130 3.870 10 H 0.085 0.915 11 C -0.173 4.173 12 N -0.686 5.686 13 C 0.075 3.925 14 C -0.086 4.086 15 C -0.069 4.069 16 S -0.221 6.221 17 C -0.524 4.524 18 H 0.050 0.950 19 C 0.038 3.962 20 N -0.922 5.922 21 Si 0.926 3.074 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.230 1.230 25 C -0.064 4.064 26 C -0.169 4.169 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.347 0.653 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.277 0.723 47 H 0.135 0.865 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.251 2.354 -13.520 35.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.236 4.236 4 O -0.245 6.245 5 C 0.068 3.932 6 C -0.230 4.230 7 C -0.101 4.101 8 C -0.111 4.111 9 C 0.020 3.980 10 H 0.103 0.897 11 C -0.232 4.232 12 N -0.318 5.318 13 C -0.055 4.055 14 C -0.125 4.125 15 C -0.218 4.218 16 S 0.007 5.993 17 C -0.671 4.671 18 H 0.068 0.932 19 C -0.167 4.167 20 N -0.560 5.560 21 Si 0.747 3.253 22 H -0.185 1.185 23 H -0.187 1.187 24 H -0.153 1.153 25 C -0.083 4.083 26 C -0.188 4.188 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.166 0.834 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.152 0.848 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -33.701 3.142 -12.265 36.001 hybrid contribution 1.542 -0.901 -0.946 2.021 sum -32.160 2.241 -13.211 34.840 Atomic orbital electron populations 1.21881 0.91303 1.03234 1.03924 1.22685 0.96327 0.92825 0.86873 1.22378 1.01670 0.95676 1.03852 1.86102 1.29422 1.68590 1.40347 1.19164 0.85026 0.93934 0.95065 1.21388 0.96260 1.06279 0.99092 1.21023 0.95132 0.95371 0.98551 1.19783 0.95932 1.00324 0.95056 1.20352 0.91425 0.95205 0.91017 0.89682 1.22436 1.02168 0.95758 1.02800 1.60513 1.05273 1.53919 1.12057 1.21821 0.87122 1.00711 0.95881 1.21184 0.90151 1.03259 0.97930 1.23078 0.98709 1.03405 0.96637 1.83859 1.03865 1.96995 1.14629 1.22358 0.90619 1.57920 0.96223 0.93200 1.25783 0.93985 0.92791 1.04117 1.70042 1.00566 1.49167 1.36257 0.85704 0.80717 0.80220 0.78643 1.18543 1.18747 1.15311 1.20853 0.92054 0.97817 0.97551 1.20607 0.97636 1.01474 0.99068 0.91880 0.88376 0.91965 0.90197 0.92080 0.92700 0.88939 0.83955 0.84379 0.91935 0.91273 0.92344 0.83411 0.94309 0.91093 0.91195 0.91045 0.91589 0.91730 0.91417 0.84762 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.56 71.98 0.69 -0.57 16 2 C 0.07 0.83 2.85 30.59 0.09 0.92 16 3 C -0.18 -1.91 9.17 71.98 0.66 -1.25 16 4 O -0.33 -6.27 9.80 -92.44 -0.91 -7.17 16 5 C 0.11 2.24 6.60 22.50 0.15 2.39 16 6 C -0.21 -3.60 8.24 22.36 0.18 -3.42 16 7 C -0.08 -1.40 9.66 22.25 0.21 -1.18 16 8 C -0.11 -2.02 4.96 -19.85 -0.10 -2.12 16 9 C 0.13 2.23 2.79 44.17 0.12 2.36 16 10 H 0.09 1.47 7.66 -2.39 -0.02 1.45 16 11 C -0.17 -2.54 9.14 71.98 0.66 -1.88 16 12 N -0.69 -13.68 5.71 -495.45 -2.83 -16.51 16 13 C 0.08 1.72 5.48 86.30 0.47 2.19 16 14 C -0.09 -2.48 5.48 30.60 0.17 -2.31 16 15 C -0.07 -2.63 5.67 71.98 0.41 -2.22 16 16 S -0.22 -10.76 19.41 -56.49 -1.10 -11.85 16 17 C -0.52 -31.24 10.04 67.95 0.68 -30.56 16 18 H 0.05 3.23 8.03 -2.91 -0.02 3.21 16 19 C 0.04 2.25 5.50 84.86 0.47 2.71 16 20 N -0.92 -57.20 13.97 21.65 0.30 -56.90 16 21 Si 0.93 44.55 27.74 68.60 1.90 46.46 16 22 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.23 -10.69 6.74 99.48 0.67 -10.02 16 25 C -0.06 -1.22 9.32 22.26 0.21 -1.01 16 26 C -0.17 -3.38 9.99 22.37 0.22 -3.16 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.83 6.31 -2.39 -0.02 0.82 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.70 6.91 -2.39 -0.02 0.68 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.14 1.83 5.43 -2.91 -0.02 1.82 16 35 H 0.14 1.80 8.03 -2.91 -0.02 1.77 16 36 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 0.89 7.45 -2.39 -0.02 0.87 16 39 H 0.35 6.22 7.82 -89.69 -0.70 5.52 16 40 H 0.04 0.84 7.44 -2.39 -0.02 0.82 16 41 H 0.07 1.67 8.05 -2.39 -0.02 1.65 16 42 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.06 2.50 8.14 -2.40 -0.02 2.48 16 46 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 47 H 0.13 2.24 7.25 -2.91 -0.02 2.22 16 48 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -68.88 398.32 2.86 -66.02 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.19 Total: 19.06 kcal Atomic # 6 Polarization: -44.41 SS G_CDS: 5.29 Total: -39.12 kcal Atomic # 7 Polarization: -70.88 SS G_CDS: -2.53 Total: -73.40 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.91 Total: -7.17 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.46 kcal Atomic # 16 Polarization: -10.76 SS G_CDS: -1.10 Total: -11.85 kcal Total: -68.88 2.86 -66.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179534648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.527 kcal (2) G-P(sol) polarization free energy of solvation -68.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds