Wall clock time and date at job start Tue Mar 31 2020 16:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.73724 * 2 1 4 4 C 1.53381 * 109.60155 * 120.41031 * 2 1 3 5 5 C 1.53053 * 107.92384 * 187.97296 * 4 2 1 6 6 C 1.50803 * 109.65134 * 312.64839 * 5 4 2 7 7 C 1.38617 * 118.12089 * 195.41338 * 6 5 4 8 8 C 1.38048 * 120.48724 * 180.63509 * 7 6 5 9 9 C 1.38319 * 119.88399 * 359.97438 * 8 7 6 10 10 C 1.37803 * 119.95893 * 359.85460 * 9 8 7 11 11 C 1.38364 * 122.01124 * 15.76952 * 6 5 4 12 12 N 1.39411 * 122.95941 * 359.14124 * 11 6 5 13 13 C 1.46897 * 110.99723 * 254.66220 * 12 11 6 14 14 C 1.50706 * 109.47060 * 293.83229 * 13 12 11 15 15 C 1.38299 * 119.92996 * 277.11691 * 14 13 12 16 16 C 1.38098 * 120.06770 * 180.28056 * 15 14 13 17 17 C 1.38873 * 119.93037 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.06868 * 180.02562 * 17 16 15 19 19 C 1.34831 * 117.00138 * 186.25727 * 18 17 16 20 20 H 1.08004 * 119.99930 * 5.79698 * 19 18 17 21 21 C 1.38649 * 120.00119 * 185.78858 * 19 18 17 22 22 N 1.31561 * 119.99945 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00094 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47253 * 90.00114 * 23 21 19 25 25 H 1.48500 * 109.46920 * 209.99912 * 23 21 19 26 26 H 1.48493 * 109.47024 * 329.99836 * 23 21 19 27 27 C 1.38881 * 119.86335 * 359.97438 * 17 16 15 28 28 C 1.38091 * 119.93131 * 0.02562 * 27 17 16 29 29 H 1.08995 * 109.47044 * 187.31489 * 1 2 3 30 30 H 1.08996 * 109.46725 * 307.30976 * 1 2 3 31 31 H 1.08995 * 109.46909 * 67.31096 * 1 2 3 32 32 H 1.08995 * 109.77090 * 68.37073 * 4 2 1 33 33 H 1.08998 * 109.81355 * 307.60004 * 4 2 1 34 34 H 1.09004 * 109.43635 * 192.59197 * 5 4 2 35 35 H 1.08992 * 109.44196 * 72.70859 * 5 4 2 36 36 H 1.08001 * 119.75584 * 0.60172 * 7 6 5 37 37 H 1.07999 * 120.05584 * 180.02562 * 8 7 6 38 38 H 1.08006 * 120.01683 * 179.87488 * 9 8 7 39 39 H 1.07992 * 119.79301 * 180.02562 * 10 9 8 40 40 H 1.09005 * 109.47048 * 173.83534 * 13 12 11 41 41 H 1.08998 * 109.47567 * 53.83293 * 13 12 11 42 42 H 1.07998 * 119.96821 * 0.27727 * 15 14 13 43 43 H 1.08007 * 120.03514 * 179.97438 * 16 15 14 44 44 H 0.97000 * 120.00152 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03112 * 179.97438 * 27 17 16 46 46 H 1.08003 * 119.97236 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8981 1.0259 0.0000 4 6 2.0446 -0.7314 1.2461 5 6 3.5612 -0.5369 1.3138 6 6 4.1694 -0.8183 -0.0372 7 6 5.5396 -1.0150 -0.1087 8 6 6.1493 -1.2629 -1.3222 9 6 5.3896 -1.3164 -2.4768 10 6 4.0264 -1.1253 -2.4132 11 6 3.4040 -0.8761 -1.1884 12 7 2.0213 -0.6982 -1.1896 13 6 1.3259 -1.9791 -1.3730 14 6 1.6170 -2.5160 -2.7508 15 6 0.8855 -2.0668 -3.8351 16 6 1.1459 -2.5611 -5.0980 17 6 2.1439 -3.5098 -5.2786 18 8 2.4027 -3.9972 -6.5189 19 6 3.2919 -5.0069 -6.6066 20 1 3.6916 -5.4540 -5.7084 21 6 3.6930 -5.4715 -7.8498 22 7 4.5602 -6.4571 -7.9354 23 14 3.0020 -4.6979 -9.4034 24 1 3.8697 -3.5678 -9.8218 25 1 2.9576 -5.7146 -10.4849 26 1 1.6296 -4.1966 -9.1385 27 6 2.8775 -3.9580 -4.1878 28 6 2.6123 -3.4599 -2.9275 29 1 -0.3633 -1.0193 0.1308 30 1 -0.3632 0.6229 0.8174 31 1 -0.3633 0.3964 -0.9481 32 1 1.8121 -1.7937 1.1724 33 1 1.5791 -0.3132 2.1386 34 1 3.9821 -1.2210 2.0508 35 1 3.7827 0.4899 1.6047 36 1 6.1348 -0.9736 0.7916 37 1 7.2173 -1.4156 -1.3698 38 1 5.8646 -1.5082 -3.4277 39 1 3.4358 -1.1680 -3.3163 40 1 0.2521 -1.8289 -1.2610 41 1 1.6732 -2.6915 -0.6247 42 1 0.1097 -1.3288 -3.6941 43 1 0.5740 -2.2103 -5.9444 44 1 4.8406 -6.7823 -8.8051 45 1 3.6540 -4.6960 -4.3251 46 1 3.1827 -3.8076 -2.0788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729267272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:58 Heat of formation + Delta-G solvation = 33.030912 kcal Electronic energy + Delta-G solvation = -27416.381777 eV Core-core repulsion = 23850.435774 eV Total energy + Delta-G solvation = -3565.946003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.89007 -39.07287 -37.38217 -36.70762 -33.85720 -32.38684 -31.77239 -30.41460 -30.26246 -29.34222 -27.62699 -25.97319 -24.64865 -23.47507 -22.09577 -21.95350 -21.84752 -20.70152 -18.92754 -17.89284 -17.31998 -16.72723 -16.24325 -15.54773 -15.04865 -14.76084 -14.69157 -14.35097 -14.11700 -13.99642 -13.82110 -13.73779 -13.38548 -13.13985 -12.81374 -12.67516 -12.64721 -12.35733 -12.19850 -12.16697 -12.10861 -11.49078 -11.38572 -11.23011 -11.09191 -10.93457 -10.81322 -10.68522 -10.49873 -10.43439 -10.14545 -9.40741 -9.13841 -8.86795 -8.55969 -8.17491 -7.73890 -7.29419 -6.42203 -4.08578 1.51490 1.60037 2.16502 2.18945 3.21619 3.25642 3.40189 3.79583 3.98465 4.23347 4.51266 4.58038 4.67456 4.69172 4.88545 5.00441 5.08807 5.13229 5.17151 5.22498 5.28584 5.36133 5.38168 5.48009 5.55747 5.59927 5.65044 5.69451 5.74748 5.77493 5.82255 5.86131 5.99053 6.00545 6.11472 6.15398 6.28662 6.35123 6.56357 6.57019 6.61867 6.78892 6.80366 6.98752 7.03617 7.19172 7.27619 7.32201 7.60840 7.61749 7.79706 8.03453 8.93274 9.56013 10.65483 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.003554 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.327005 B = 7875.956436 C = 8903.988699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.083 3.917 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.075 4.075 6 C -0.128 4.128 7 C -0.115 4.115 8 C -0.134 4.134 9 C -0.111 4.111 10 C -0.096 4.096 11 C 0.114 3.886 12 N -0.490 5.490 13 C 0.110 3.890 14 C -0.175 4.175 15 C -0.054 4.054 16 C -0.196 4.196 17 C 0.163 3.837 18 O -0.217 6.217 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.064 3.936 22 N -0.879 5.879 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.221 4.221 28 C -0.054 4.054 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.279 0.721 45 H 0.131 0.869 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 12.421 17.669 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 H 0.103 0.897 4 C -0.192 4.192 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.134 4.134 8 C -0.153 4.153 9 C -0.130 4.130 10 C -0.116 4.116 11 C 0.018 3.982 12 N -0.207 5.207 13 C -0.014 4.014 14 C -0.177 4.177 15 C -0.073 4.073 16 C -0.216 4.216 17 C 0.110 3.890 18 O -0.122 6.122 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.517 5.517 23 Si 0.730 3.270 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.240 4.240 28 C -0.073 4.073 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.152 0.848 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.089 0.911 45 H 0.149 0.851 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.111 12.610 16.903 21.485 hybrid contribution 0.338 -0.378 -0.043 0.509 sum -3.773 12.231 16.860 21.168 Atomic orbital electron populations 1.21968 0.93994 1.02185 1.02596 1.21732 0.95440 0.98056 0.87221 0.89694 1.22265 0.95931 1.01602 0.99443 1.20469 0.94927 1.01704 0.94089 1.19862 0.94336 1.04663 0.94200 1.20835 0.93621 1.01275 0.97645 1.21010 0.99597 1.01935 0.92765 1.21073 0.93906 0.99487 0.98489 1.21379 0.94281 0.98542 0.97388 1.18390 0.88327 0.99168 0.92338 1.58887 1.02511 1.21664 1.37593 1.21025 0.98522 0.87540 0.94304 1.19110 1.01724 1.02680 0.94161 1.20423 0.98138 0.97544 0.91215 1.20197 1.01374 1.02493 0.97490 1.19154 0.92822 0.91865 0.85134 1.83592 1.56860 1.47434 1.24328 1.20754 1.20714 1.08665 0.96240 0.87704 1.24466 0.95298 0.95773 0.98437 1.69649 1.30191 1.25591 1.26291 0.86190 0.80756 0.78930 0.81101 1.19898 1.20798 1.18332 1.21204 1.04433 1.06100 0.92300 1.20635 0.95355 0.95162 0.96158 0.92112 0.92028 0.91334 0.91397 0.90915 0.90956 0.90958 0.86824 0.86541 0.85989 0.84827 0.89478 0.94293 0.86902 0.86615 0.91064 0.85118 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.28 37.16 0.31 -0.94 16 2 C 0.08 0.85 2.83 -67.77 -0.19 0.65 16 3 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 4 C -0.15 -1.40 5.32 -26.51 -0.14 -1.54 16 5 C -0.07 -0.73 5.81 -27.81 -0.16 -0.89 16 6 C -0.13 -1.62 5.74 -104.39 -0.60 -2.22 16 7 C -0.12 -1.41 9.63 -39.51 -0.38 -1.80 16 8 C -0.13 -1.75 10.05 -39.62 -0.40 -2.15 16 9 C -0.11 -1.64 10.03 -39.71 -0.40 -2.04 16 10 C -0.10 -1.52 6.98 -39.22 -0.27 -1.79 16 11 C 0.11 1.62 5.02 -83.85 -0.42 1.20 16 12 N -0.49 -6.33 4.43 -165.08 -0.73 -7.06 16 13 C 0.11 1.45 4.28 -4.98 -0.02 1.43 16 14 C -0.18 -2.82 3.43 -104.57 -0.36 -3.18 16 15 C -0.05 -0.90 9.60 -39.61 -0.38 -1.28 16 16 C -0.20 -3.80 9.99 -39.40 -0.39 -4.19 16 17 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 18 O -0.22 -5.67 8.59 0.04 0.00 -5.67 16 19 C -0.39 -10.86 9.89 30.88 0.31 -10.55 16 20 H 0.11 3.01 5.55 -52.48 -0.29 2.72 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 22 N -0.88 -25.33 13.96 55.48 0.77 -24.55 16 23 Si 0.90 21.62 28.62 -169.99 -4.86 16.75 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 27 C -0.22 -4.68 9.13 -39.40 -0.36 -5.04 16 28 C -0.05 -0.97 7.04 -39.61 -0.28 -1.25 16 29 H 0.06 0.50 6.50 -51.93 -0.34 0.16 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.68 6.69 -51.93 -0.35 0.33 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 39 H 0.13 2.36 6.13 -52.49 -0.32 2.04 16 40 H 0.09 1.01 5.54 -51.93 -0.29 0.72 16 41 H 0.04 0.52 6.89 -51.93 -0.36 0.16 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 44 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.13 2.97 5.73 -52.49 -0.30 2.67 16 46 H 0.10 1.75 8.05 -52.48 -0.42 1.33 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -29.02 360.61 -10.34 -39.36 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.45 Total: 6.25 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -4.50 Total: -30.51 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.04 Total: -31.61 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: 0.00 Total: -5.67 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.86 Total: 16.75 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.02 -10.34 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729267272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.387 kcal (2) G-P(sol) polarization free energy of solvation -29.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds