Wall clock time and date at job start Tue Mar 31 2020 16:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.73724 * 2 1 4 4 C 1.53381 * 109.60155 * 120.41031 * 2 1 3 5 5 C 1.53053 * 107.92384 * 187.97296 * 4 2 1 6 6 C 1.50803 * 109.65134 * 312.64839 * 5 4 2 7 7 C 1.38617 * 118.12089 * 195.41338 * 6 5 4 8 8 C 1.38048 * 120.48724 * 180.63509 * 7 6 5 9 9 C 1.38319 * 119.88399 * 359.97438 * 8 7 6 10 10 C 1.37803 * 119.95893 * 359.85460 * 9 8 7 11 11 C 1.38364 * 122.01124 * 15.76952 * 6 5 4 12 12 N 1.39411 * 122.95941 * 359.14124 * 11 6 5 13 13 C 1.46897 * 110.99723 * 254.66220 * 12 11 6 14 14 C 1.50706 * 109.47060 * 293.83229 * 13 12 11 15 15 C 1.38299 * 119.92996 * 277.11691 * 14 13 12 16 16 C 1.38098 * 120.06770 * 180.28056 * 15 14 13 17 17 C 1.38873 * 119.93037 * 359.97438 * 16 15 14 18 18 O 1.35753 * 120.06868 * 180.02562 * 17 16 15 19 19 C 1.34831 * 117.00138 * 186.25727 * 18 17 16 20 20 H 1.08004 * 119.99930 * 5.79698 * 19 18 17 21 21 C 1.38649 * 120.00119 * 185.78858 * 19 18 17 22 22 N 1.31561 * 119.99945 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00094 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47253 * 90.00114 * 23 21 19 25 25 H 1.48500 * 109.46920 * 209.99912 * 23 21 19 26 26 H 1.48493 * 109.47024 * 329.99836 * 23 21 19 27 27 C 1.38881 * 119.86335 * 359.97438 * 17 16 15 28 28 C 1.38091 * 119.93131 * 0.02562 * 27 17 16 29 29 H 1.08995 * 109.47044 * 187.31489 * 1 2 3 30 30 H 1.08996 * 109.46725 * 307.30976 * 1 2 3 31 31 H 1.08995 * 109.46909 * 67.31096 * 1 2 3 32 32 H 1.08995 * 109.77090 * 68.37073 * 4 2 1 33 33 H 1.08998 * 109.81355 * 307.60004 * 4 2 1 34 34 H 1.09004 * 109.43635 * 192.59197 * 5 4 2 35 35 H 1.08992 * 109.44196 * 72.70859 * 5 4 2 36 36 H 1.08001 * 119.75584 * 0.60172 * 7 6 5 37 37 H 1.07999 * 120.05584 * 180.02562 * 8 7 6 38 38 H 1.08006 * 120.01683 * 179.87488 * 9 8 7 39 39 H 1.07992 * 119.79301 * 180.02562 * 10 9 8 40 40 H 1.09005 * 109.47048 * 173.83534 * 13 12 11 41 41 H 1.08998 * 109.47567 * 53.83293 * 13 12 11 42 42 H 1.07998 * 119.96821 * 0.27727 * 15 14 13 43 43 H 1.08007 * 120.03514 * 179.97438 * 16 15 14 44 44 H 0.97000 * 120.00152 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.03112 * 179.97438 * 27 17 16 46 46 H 1.08003 * 119.97236 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8981 1.0259 0.0000 4 6 2.0446 -0.7314 1.2461 5 6 3.5612 -0.5369 1.3138 6 6 4.1694 -0.8183 -0.0372 7 6 5.5396 -1.0150 -0.1087 8 6 6.1493 -1.2629 -1.3222 9 6 5.3896 -1.3164 -2.4768 10 6 4.0264 -1.1253 -2.4132 11 6 3.4040 -0.8761 -1.1884 12 7 2.0213 -0.6982 -1.1896 13 6 1.3259 -1.9791 -1.3730 14 6 1.6170 -2.5160 -2.7508 15 6 0.8855 -2.0668 -3.8351 16 6 1.1459 -2.5611 -5.0980 17 6 2.1439 -3.5098 -5.2786 18 8 2.4027 -3.9972 -6.5189 19 6 3.2919 -5.0069 -6.6066 20 1 3.6916 -5.4540 -5.7084 21 6 3.6930 -5.4715 -7.8498 22 7 4.5602 -6.4571 -7.9354 23 14 3.0020 -4.6979 -9.4034 24 1 3.8697 -3.5678 -9.8218 25 1 2.9576 -5.7146 -10.4849 26 1 1.6296 -4.1966 -9.1385 27 6 2.8775 -3.9580 -4.1878 28 6 2.6123 -3.4599 -2.9275 29 1 -0.3633 -1.0193 0.1308 30 1 -0.3632 0.6229 0.8174 31 1 -0.3633 0.3964 -0.9481 32 1 1.8121 -1.7937 1.1724 33 1 1.5791 -0.3132 2.1386 34 1 3.9821 -1.2210 2.0508 35 1 3.7827 0.4899 1.6047 36 1 6.1348 -0.9736 0.7916 37 1 7.2173 -1.4156 -1.3698 38 1 5.8646 -1.5082 -3.4277 39 1 3.4358 -1.1680 -3.3163 40 1 0.2521 -1.8289 -1.2610 41 1 1.6732 -2.6915 -0.6247 42 1 0.1097 -1.3288 -3.6941 43 1 0.5740 -2.2103 -5.9444 44 1 4.8406 -6.7823 -8.8051 45 1 3.6540 -4.6960 -4.3251 46 1 3.1827 -3.8076 -2.0788 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729267272.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:56 Heat of formation + Delta-G solvation = 18.584513 kcal Electronic energy + Delta-G solvation = -27417.008220 eV Core-core repulsion = 23850.435774 eV Total energy + Delta-G solvation = -3566.572445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.92880 -40.72480 -38.61949 -38.07656 -34.93731 -34.38090 -32.65460 -31.84521 -31.70955 -30.45767 -28.57423 -27.62768 -26.12713 -24.41752 -23.66311 -22.94766 -22.84555 -22.17980 -19.99768 -19.72833 -19.07745 -17.88135 -17.22624 -16.66833 -16.56438 -16.25561 -15.78829 -15.59992 -15.57890 -15.29212 -15.20175 -14.94558 -14.69016 -14.38205 -14.18532 -14.00247 -13.99169 -13.74701 -13.39316 -13.22792 -13.03033 -12.91897 -12.56016 -12.48979 -12.25662 -12.23510 -12.07458 -11.92111 -11.85594 -11.57801 -11.44241 -11.28349 -10.88860 -10.15548 -9.81934 -9.51598 -8.96747 -8.74851 -8.50819 -6.23116 0.43539 0.45355 0.62985 0.68838 1.30413 1.34604 1.51180 2.27306 2.64667 2.84567 2.96294 3.12007 3.21482 3.79472 3.86385 3.87565 3.99306 4.03532 4.14043 4.19360 4.26495 4.34816 4.42045 4.46545 4.53484 4.55507 4.60101 4.67896 4.72461 4.77871 4.83974 4.94714 4.98678 5.01449 5.07434 5.09914 5.23581 5.24460 5.34793 5.35718 5.40282 5.51467 5.57631 5.61258 5.71228 5.75831 5.80166 5.90332 5.96173 6.17114 6.25714 6.58303 6.83744 7.58496 8.61062 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.003554 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.327005 B = 7875.956436 C = 8903.988699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.081 3.919 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.075 4.075 6 C -0.129 4.129 7 C -0.114 4.114 8 C -0.139 4.139 9 C -0.132 4.132 10 C -0.117 4.117 11 C 0.105 3.895 12 N -0.498 5.498 13 C 0.113 3.887 14 C -0.147 4.147 15 C -0.047 4.047 16 C -0.193 4.193 17 C 0.124 3.876 18 O -0.245 6.245 19 C -0.397 4.397 20 H 0.077 0.923 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.970 3.030 24 H -0.267 1.267 25 H -0.267 1.267 26 H -0.261 1.261 27 C -0.232 4.232 28 C -0.052 4.052 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.042 0.958 42 H 0.153 0.847 43 H 0.128 0.872 44 H 0.284 0.716 45 H 0.101 0.899 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.977 15.036 20.840 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 H 0.102 0.898 4 C -0.187 4.187 5 C -0.111 4.111 6 C -0.132 4.132 7 C -0.132 4.132 8 C -0.157 4.157 9 C -0.151 4.151 10 C -0.137 4.137 11 C 0.008 3.992 12 N -0.215 5.215 13 C -0.010 4.010 14 C -0.148 4.148 15 C -0.065 4.065 16 C -0.212 4.212 17 C 0.075 3.925 18 O -0.152 6.152 19 C -0.473 4.473 20 H 0.095 0.905 21 C -0.188 4.188 22 N -0.565 5.565 23 Si 0.792 3.208 24 H -0.192 1.192 25 H -0.191 1.191 26 H -0.185 1.185 27 C -0.252 4.252 28 C -0.070 4.070 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.060 0.940 42 H 0.170 0.830 43 H 0.146 0.854 44 H 0.094 0.906 45 H 0.119 0.881 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.137 15.251 20.122 25.983 hybrid contribution 0.930 -1.004 -0.653 1.516 sum -5.207 14.247 19.469 24.681 Atomic orbital electron populations 1.21960 0.92325 1.02886 1.03252 1.21875 0.96726 0.97616 0.86420 0.89784 1.22249 0.95471 1.01125 0.99896 1.20567 0.95367 1.02920 0.92294 1.20269 0.94523 1.03173 0.95228 1.21216 0.93968 0.99847 0.98195 1.21241 1.00483 1.01477 0.92517 1.21111 0.94175 1.00831 0.98998 1.21221 0.94475 1.00723 0.97295 1.18476 0.89224 0.99359 0.92121 1.58793 1.01784 1.21131 1.39756 1.21049 1.00218 0.87989 0.91780 1.19557 0.99052 1.00025 0.96154 1.20843 0.98477 0.97315 0.89850 1.20508 1.00120 1.01210 0.99319 1.19643 0.94637 0.93724 0.84478 1.83529 1.57662 1.47952 1.26089 1.20656 1.21218 1.09724 0.95726 0.90540 1.25276 0.95741 0.96332 1.01438 1.69735 1.32115 1.27340 1.27290 0.85221 0.79723 0.78400 0.77409 1.19234 1.19119 1.18545 1.21109 1.04156 1.06157 0.93751 1.20696 0.95965 0.95510 0.94862 0.91702 0.89934 0.91843 0.92112 0.88299 0.89579 0.89451 0.83929 0.84792 0.87292 0.87644 0.86755 0.94011 0.82980 0.85364 0.90593 0.88077 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.28 71.98 0.60 -1.16 16 2 C 0.08 1.31 2.83 45.14 0.13 1.44 16 3 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 4 C -0.15 -2.03 5.32 30.74 0.16 -1.87 16 5 C -0.07 -1.14 5.81 29.90 0.17 -0.97 16 6 C -0.13 -2.92 5.74 -19.71 -0.11 -3.04 16 7 C -0.11 -2.52 9.63 22.32 0.21 -2.30 16 8 C -0.14 -3.52 10.05 22.24 0.22 -3.30 16 9 C -0.13 -4.08 10.03 22.19 0.22 -3.86 16 10 C -0.12 -3.74 6.98 22.50 0.16 -3.58 16 11 C 0.10 2.79 5.02 38.30 0.19 2.98 16 12 N -0.50 -11.41 4.43 -676.19 -3.00 -14.41 16 13 C 0.11 2.63 4.28 85.56 0.37 2.99 16 14 C -0.15 -4.49 3.43 -19.83 -0.07 -4.56 16 15 C -0.05 -1.44 9.60 22.25 0.21 -1.23 16 16 C -0.19 -7.41 9.99 22.39 0.22 -7.19 16 17 C 0.12 5.90 6.65 22.58 0.15 6.05 16 18 O -0.24 -13.52 8.59 -22.78 -0.20 -13.72 16 19 C -0.40 -23.84 9.89 67.92 0.67 -23.17 16 20 H 0.08 4.86 5.55 -2.91 -0.02 4.84 16 21 C 0.01 0.61 5.49 84.83 0.47 1.08 16 22 N -0.92 -56.05 13.96 21.61 0.30 -55.75 16 23 Si 0.97 46.14 28.62 68.60 1.96 48.10 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 27 C -0.23 -10.53 9.13 22.39 0.20 -10.32 16 28 C -0.05 -1.88 7.04 22.25 0.16 -1.73 16 29 H 0.06 0.73 6.50 -2.39 -0.02 0.72 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.95 6.69 -2.39 -0.02 0.93 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.11 3.87 6.13 -2.91 -0.02 3.85 16 40 H 0.11 2.10 5.54 -2.38 -0.01 2.09 16 41 H 0.04 0.98 6.89 -2.39 -0.02 0.96 16 42 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 45 H 0.10 5.13 5.73 -2.91 -0.02 5.12 16 46 H 0.11 3.84 8.05 -2.91 -0.02 3.81 16 Total: -1.00 -68.20 360.61 4.40 -63.81 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.98 Total: 25.70 kcal Atomic # 6 Polarization: -58.07 SS G_CDS: 4.34 Total: -53.73 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -2.70 Total: -70.16 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.20 Total: -13.72 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.96 Total: 48.10 kcal Total: -68.20 4.40 -63.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729267272.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.393 kcal (2) G-P(sol) polarization free energy of solvation -68.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds