Wall clock time and date at job start Tue Mar 31 2020 16:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47356 * 2 1 4 4 C 1.50705 * 109.47062 * 119.99970 * 2 1 3 5 5 C 1.38236 * 119.99642 * 63.33949 * 4 2 1 6 6 C 1.38241 * 119.99998 * 179.81013 * 5 4 2 7 7 C 1.38240 * 119.99455 * 0.39750 * 6 5 4 8 8 C 1.38230 * 120.00174 * 359.85635 * 7 6 5 9 9 C 1.38227 * 120.00273 * 243.61336 * 4 2 1 10 10 N 1.46500 * 109.47003 * 239.99761 * 2 1 3 11 11 C 1.46501 * 120.00317 * 305.28221 * 10 2 1 12 12 C 1.34778 * 119.99793 * 125.28768 * 10 2 1 13 13 O 1.21281 * 120.00104 * 359.97438 * 12 10 2 14 14 C 1.50705 * 120.00079 * 180.02562 * 12 10 2 15 15 C 1.50692 * 109.47046 * 179.97438 * 14 12 10 16 16 C 1.37648 * 120.12794 * 265.29664 * 15 14 12 17 17 C 1.38611 * 120.24966 * 180.32167 * 16 15 14 18 18 C 1.38649 * 120.50106 * 359.67719 * 17 16 15 19 19 C 1.37600 * 120.24912 * 359.97438 * 18 17 16 20 20 C 1.40697 * 120.13381 * 84.99910 * 15 14 12 21 21 C 1.41396 * 120.24246 * 359.97438 * 20 15 14 22 22 H 1.08001 * 119.99850 * 26.96325 * 21 20 15 23 23 C 1.39944 * 120.00309 * 206.96970 * 21 20 15 24 24 N 1.30821 * 119.99980 * 197.60773 * 23 21 20 25 25 Si 1.86807 * 119.99683 * 17.60157 * 23 21 20 26 26 H 1.48498 * 109.46993 * 270.00165 * 25 23 21 27 27 H 1.48492 * 109.47190 * 30.00126 * 25 23 21 28 28 H 1.48504 * 109.46767 * 150.00545 * 25 23 21 29 29 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46861 * 299.99852 * 1 2 3 31 31 H 1.08997 * 109.46848 * 60.00162 * 1 2 3 32 32 H 1.07996 * 120.00614 * 359.97438 * 5 4 2 33 33 H 1.07995 * 120.00535 * 180.23188 * 6 5 4 34 34 H 1.08005 * 119.99794 * 179.82995 * 7 6 5 35 35 H 1.08001 * 120.00396 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.99602 * 359.97438 * 9 4 2 37 37 H 1.08995 * 109.47354 * 275.36198 * 11 10 2 38 38 H 1.09002 * 109.47004 * 35.36132 * 11 10 2 39 39 H 1.08996 * 109.46947 * 155.36064 * 11 10 2 40 40 H 1.08996 * 109.47379 * 59.98852 * 14 12 10 41 41 H 1.09008 * 109.46680 * 299.99740 * 14 12 10 42 42 H 1.08004 * 119.87103 * 0.02562 * 16 15 14 43 43 H 1.08000 * 119.74696 * 179.69693 * 17 16 15 44 44 H 1.08003 * 119.87858 * 180.02562 * 18 17 16 45 45 H 1.08003 * 120.12718 * 180.02562 * 19 18 17 46 46 H 0.96998 * 119.99966 * 354.90751 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7562 -2.0523 1.4149 6 6 2.2203 -2.7050 2.5417 7 6 2.9535 -2.0137 3.4880 8 6 3.2251 -0.6706 3.3061 9 6 2.7643 -0.0189 2.1775 10 7 2.0183 -0.6907 -1.1962 11 6 1.5716 -2.0551 -1.4879 12 6 2.8787 -0.0709 -2.0281 13 8 3.2482 1.0588 -1.7868 14 6 3.3806 -0.7811 -3.2589 15 6 4.3214 0.1235 -4.0122 16 6 3.8523 0.9008 -5.0468 17 6 4.7167 1.7288 -5.7457 18 6 6.0601 1.7892 -5.4082 19 6 6.5497 1.0264 -4.3729 20 6 5.6815 0.1815 -3.6569 21 6 6.1735 -0.6074 -2.5915 22 1 5.6820 -1.5340 -2.3340 23 6 7.2971 -0.1874 -1.8707 24 7 7.9587 -1.0424 -1.1340 25 14 7.8523 1.5940 -1.9607 26 1 8.8167 1.7560 -3.0781 27 1 6.6747 2.4683 -2.1925 28 1 8.5069 1.9735 -0.6829 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1802 -2.5915 0.6775 33 1 2.0079 -3.7542 2.6840 34 1 3.3138 -2.5229 4.3697 35 1 3.7976 -0.1304 4.0456 36 1 2.9766 1.0304 2.0353 37 1 2.1944 -2.7654 -0.9443 38 1 0.5329 -2.1713 -1.1784 39 1 1.6551 -2.2436 -2.5582 40 1 2.5368 -1.0407 -3.8981 41 1 3.9066 -1.6895 -2.9650 42 1 2.8075 0.8619 -5.3180 43 1 4.3409 2.3316 -6.5592 44 1 6.7247 2.4382 -5.9593 45 1 7.5965 1.0753 -4.1114 46 1 7.6290 -1.9485 -1.0282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776750607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:51 Heat of formation + Delta-G solvation = 9.303382 kcal Electronic energy + Delta-G solvation = -27533.413544 eV Core-core repulsion = 23966.438639 eV Total energy + Delta-G solvation = -3566.974906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.11717 -38.81189 -37.60150 -35.66641 -33.62586 -32.70594 -31.39660 -30.85667 -30.10938 -29.26271 -26.95967 -26.82801 -24.54462 -23.46572 -22.46825 -21.51197 -20.98911 -19.68586 -18.58386 -18.02082 -16.89309 -16.63928 -16.00027 -15.39331 -15.29541 -14.92504 -14.53103 -14.30561 -14.07696 -13.70517 -13.65453 -13.36212 -13.11091 -12.97285 -12.50480 -12.42235 -12.33862 -12.18360 -12.06834 -12.01849 -11.77495 -11.43492 -11.21261 -11.20429 -10.92065 -10.77527 -10.73942 -10.24938 -10.10257 -9.64883 -9.21005 -9.16185 -8.90930 -8.84647 -8.67134 -8.35388 -7.61801 -7.53057 -7.14794 -4.44571 1.37859 1.46918 2.63795 2.80706 3.27724 3.30380 3.38287 3.48220 3.69513 3.91659 4.12529 4.63617 4.68080 4.88148 5.02232 5.07664 5.15332 5.17950 5.26276 5.34991 5.46510 5.53958 5.58382 5.62565 5.66737 5.77362 5.82374 5.90525 5.97891 6.00726 6.07808 6.12038 6.16210 6.24951 6.26457 6.50454 6.55899 6.58789 6.64984 6.78734 6.87966 7.05585 7.12176 7.40581 7.55979 7.71086 7.75184 7.82385 7.90825 8.06757 8.46008 8.65602 8.83141 8.86255 10.10962 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.004854 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.631271 B = 5767.355869 C = 7094.908892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.174 3.826 3 H 0.107 0.893 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.124 4.124 7 C -0.123 4.123 8 C -0.119 4.119 9 C -0.103 4.103 10 N -0.620 5.620 11 C 0.074 3.926 12 C 0.523 3.477 13 O -0.516 6.516 14 C -0.067 4.067 15 C -0.174 4.174 16 C -0.067 4.067 17 C -0.248 4.248 18 C -0.075 4.075 19 C -0.248 4.248 20 C 0.116 3.884 21 C -0.508 4.508 22 H 0.074 0.926 23 C 0.047 3.953 24 N -0.820 5.820 25 Si 1.072 2.928 26 H -0.279 1.279 27 H -0.258 1.258 28 H -0.294 1.294 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 -3.471 5.587 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.125 0.875 4 C -0.090 4.090 5 C -0.132 4.132 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.122 4.122 10 N -0.356 5.356 11 C -0.069 4.069 12 C 0.312 3.688 13 O -0.389 6.389 14 C -0.107 4.107 15 C -0.175 4.175 16 C -0.085 4.085 17 C -0.267 4.267 18 C -0.093 4.093 19 C -0.267 4.267 20 C 0.112 3.888 21 C -0.537 4.537 22 H 0.092 0.908 23 C -0.172 4.172 24 N -0.443 5.443 25 Si 0.899 3.101 26 H -0.207 1.207 27 H -0.182 1.182 28 H -0.222 1.222 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.122 0.878 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.298 -1.903 6.263 13.931 hybrid contribution -1.077 -1.449 -0.380 1.845 sum -13.374 -3.353 5.882 14.990 Atomic orbital electron populations 1.22115 0.94427 1.02240 1.02458 1.19845 0.93622 0.97541 0.81896 0.87544 1.20175 0.98359 0.94579 0.95844 1.21164 1.00355 0.94204 0.97499 1.21097 0.98875 0.99612 0.94619 1.21125 0.98997 0.94644 0.99330 1.21136 0.99761 0.94919 0.97848 1.21118 0.96883 1.00312 0.93865 1.47976 1.47701 1.15690 1.24253 1.21880 0.99530 0.83605 1.01919 1.21062 0.76813 0.86655 0.84291 1.90660 1.55399 1.18848 1.73969 1.20289 0.98019 0.99147 0.93244 1.19012 0.93276 1.04370 1.00886 1.20404 0.96932 0.95767 0.95395 1.20299 0.94166 1.07089 1.05165 1.20586 0.94937 0.97327 0.96436 1.21103 0.98681 1.05980 1.00952 1.17490 0.90194 0.89717 0.91349 1.20535 1.12413 1.06951 1.13766 0.90850 1.27167 0.91651 1.06391 0.91998 1.70560 1.34099 1.06558 1.33108 0.83633 0.77573 0.73645 0.75220 1.20679 1.18234 1.22170 0.92224 0.91474 0.91865 0.85871 0.86327 0.86362 0.86111 0.85926 0.92668 0.91504 0.90655 0.90563 0.89039 0.89290 0.89069 0.88939 0.87847 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.88 37.16 0.33 -1.35 16 2 C 0.17 2.54 2.95 -69.08 -0.20 2.33 16 3 H 0.11 1.80 6.66 -51.93 -0.35 1.45 16 4 C -0.09 -1.27 4.97 -104.62 -0.52 -1.79 16 5 C -0.11 -1.44 7.99 -39.58 -0.32 -1.75 16 6 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 7 C -0.12 -1.50 10.05 -39.58 -0.40 -1.89 16 8 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 9 C -0.10 -1.51 9.67 -39.59 -0.38 -1.90 16 10 N -0.62 -9.81 2.75 -175.26 -0.48 -10.29 16 11 C 0.07 0.87 8.27 59.85 0.50 1.36 16 12 C 0.52 10.62 7.67 -10.98 -0.08 10.54 16 13 O -0.52 -12.72 15.37 5.56 0.09 -12.64 16 14 C -0.07 -1.33 3.83 -29.04 -0.11 -1.44 16 15 C -0.17 -4.10 4.43 -103.91 -0.46 -4.56 16 16 C -0.07 -1.47 9.66 -39.66 -0.38 -1.86 16 17 C -0.25 -5.45 10.05 -39.29 -0.39 -5.84 16 18 C -0.07 -1.71 10.02 -39.66 -0.40 -2.11 16 19 C -0.25 -6.32 7.26 -38.87 -0.28 -6.60 16 20 C 0.12 3.04 5.18 -106.83 -0.55 2.48 16 21 C -0.51 -13.91 8.84 -37.74 -0.33 -14.24 16 22 H 0.07 2.03 6.55 -52.49 -0.34 1.68 16 23 C 0.05 1.29 5.43 -17.34 -0.09 1.20 16 24 N -0.82 -22.87 13.65 55.55 0.76 -22.11 16 25 Si 1.07 26.56 24.85 -169.99 -4.22 22.34 16 26 H -0.28 -6.49 6.42 56.52 0.36 -6.12 16 27 H -0.26 -6.65 6.98 56.52 0.39 -6.25 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H 0.06 0.56 6.02 -51.93 -0.31 0.25 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.12 1.30 5.04 -52.49 -0.26 1.04 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.75 7.95 -52.49 -0.42 1.33 16 37 H 0.05 0.66 6.86 -51.93 -0.36 0.30 16 38 H 0.07 0.60 5.68 -51.93 -0.30 0.30 16 39 H 0.07 0.81 6.25 -51.93 -0.32 0.49 16 40 H 0.08 1.23 7.33 -51.93 -0.38 0.85 16 41 H 0.09 1.82 6.46 -51.92 -0.34 1.49 16 42 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 43 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 45 H 0.10 2.62 4.18 -52.48 -0.22 2.40 16 46 H 0.28 7.65 8.73 -40.82 -0.36 7.29 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -32.31 364.73 -9.43 -41.74 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.18 Total: 6.74 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: -4.89 Total: -31.28 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 0.28 Total: -32.40 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -4.22 Total: 22.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.31 -9.43 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776750607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.043 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds