Wall clock time and date at job start Tue Mar 31 2020 16:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47356 * 2 1 4 4 C 1.50705 * 109.47062 * 119.99970 * 2 1 3 5 5 C 1.38236 * 119.99642 * 63.33949 * 4 2 1 6 6 C 1.38241 * 119.99998 * 179.81013 * 5 4 2 7 7 C 1.38240 * 119.99455 * 0.39750 * 6 5 4 8 8 C 1.38230 * 120.00174 * 359.85635 * 7 6 5 9 9 C 1.38227 * 120.00273 * 243.61336 * 4 2 1 10 10 N 1.46500 * 109.47003 * 239.99761 * 2 1 3 11 11 C 1.46501 * 120.00317 * 305.28221 * 10 2 1 12 12 C 1.34778 * 119.99793 * 125.28768 * 10 2 1 13 13 O 1.21281 * 120.00104 * 359.97438 * 12 10 2 14 14 C 1.50705 * 120.00079 * 180.02562 * 12 10 2 15 15 C 1.50692 * 109.47046 * 179.97438 * 14 12 10 16 16 C 1.37648 * 120.12794 * 265.29664 * 15 14 12 17 17 C 1.38611 * 120.24966 * 180.32167 * 16 15 14 18 18 C 1.38649 * 120.50106 * 359.67719 * 17 16 15 19 19 C 1.37600 * 120.24912 * 359.97438 * 18 17 16 20 20 C 1.40697 * 120.13381 * 84.99910 * 15 14 12 21 21 C 1.41396 * 120.24246 * 359.97438 * 20 15 14 22 22 H 1.08001 * 119.99850 * 26.96325 * 21 20 15 23 23 C 1.39944 * 120.00309 * 206.96970 * 21 20 15 24 24 N 1.30821 * 119.99980 * 197.60773 * 23 21 20 25 25 Si 1.86807 * 119.99683 * 17.60157 * 23 21 20 26 26 H 1.48498 * 109.46993 * 270.00165 * 25 23 21 27 27 H 1.48492 * 109.47190 * 30.00126 * 25 23 21 28 28 H 1.48504 * 109.46767 * 150.00545 * 25 23 21 29 29 H 1.08999 * 109.47356 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46861 * 299.99852 * 1 2 3 31 31 H 1.08997 * 109.46848 * 60.00162 * 1 2 3 32 32 H 1.07996 * 120.00614 * 359.97438 * 5 4 2 33 33 H 1.07995 * 120.00535 * 180.23188 * 6 5 4 34 34 H 1.08005 * 119.99794 * 179.82995 * 7 6 5 35 35 H 1.08001 * 120.00396 * 179.97438 * 8 7 6 36 36 H 1.08001 * 119.99602 * 359.97438 * 9 4 2 37 37 H 1.08995 * 109.47354 * 275.36198 * 11 10 2 38 38 H 1.09002 * 109.47004 * 35.36132 * 11 10 2 39 39 H 1.08996 * 109.46947 * 155.36064 * 11 10 2 40 40 H 1.08996 * 109.47379 * 59.98852 * 14 12 10 41 41 H 1.09008 * 109.46680 * 299.99740 * 14 12 10 42 42 H 1.08004 * 119.87103 * 0.02562 * 16 15 14 43 43 H 1.08000 * 119.74696 * 179.69693 * 17 16 15 44 44 H 1.08003 * 119.87858 * 180.02562 * 18 17 16 45 45 H 1.08003 * 120.12718 * 180.02562 * 19 18 17 46 46 H 0.96998 * 119.99966 * 354.90751 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.7562 -2.0523 1.4149 6 6 2.2203 -2.7050 2.5417 7 6 2.9535 -2.0137 3.4880 8 6 3.2251 -0.6706 3.3061 9 6 2.7643 -0.0189 2.1775 10 7 2.0183 -0.6907 -1.1962 11 6 1.5716 -2.0551 -1.4879 12 6 2.8787 -0.0709 -2.0281 13 8 3.2482 1.0588 -1.7868 14 6 3.3806 -0.7811 -3.2589 15 6 4.3214 0.1235 -4.0122 16 6 3.8523 0.9008 -5.0468 17 6 4.7167 1.7288 -5.7457 18 6 6.0601 1.7892 -5.4082 19 6 6.5497 1.0264 -4.3729 20 6 5.6815 0.1815 -3.6569 21 6 6.1735 -0.6074 -2.5915 22 1 5.6820 -1.5340 -2.3340 23 6 7.2971 -0.1874 -1.8707 24 7 7.9587 -1.0424 -1.1340 25 14 7.8523 1.5940 -1.9607 26 1 8.8167 1.7560 -3.0781 27 1 6.6747 2.4683 -2.1925 28 1 8.5069 1.9735 -0.6829 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1802 -2.5915 0.6775 33 1 2.0079 -3.7542 2.6840 34 1 3.3138 -2.5229 4.3697 35 1 3.7976 -0.1304 4.0456 36 1 2.9766 1.0304 2.0353 37 1 2.1944 -2.7654 -0.9443 38 1 0.5329 -2.1713 -1.1784 39 1 1.6551 -2.2436 -2.5582 40 1 2.5368 -1.0407 -3.8981 41 1 3.9066 -1.6895 -2.9650 42 1 2.8075 0.8619 -5.3180 43 1 4.3409 2.3316 -6.5592 44 1 6.7247 2.4382 -5.9593 45 1 7.5965 1.0753 -4.1114 46 1 7.6290 -1.9485 -1.0282 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776750607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:50 Heat of formation + Delta-G solvation = -8.115225 kcal Electronic energy + Delta-G solvation = -27534.168872 eV Core-core repulsion = 23966.438639 eV Total energy + Delta-G solvation = -3567.730233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40725 -40.15796 -39.26071 -37.00089 -35.61850 -34.09093 -32.86666 -32.01533 -31.86634 -30.26719 -28.54603 -27.95236 -26.43616 -24.59544 -23.48532 -23.27401 -22.41000 -21.23021 -20.13913 -19.87674 -18.13010 -17.87878 -17.36806 -16.93275 -16.80822 -16.14653 -16.06504 -15.72328 -15.64286 -15.39949 -14.73493 -14.60847 -14.46774 -14.27315 -14.24126 -13.89464 -13.72894 -13.48136 -13.25249 -13.15294 -13.05031 -13.02115 -12.79570 -12.61709 -12.39799 -12.17118 -11.96182 -11.92813 -11.78462 -11.60003 -11.13710 -10.85700 -10.74633 -9.86282 -9.72039 -9.62938 -9.57864 -9.33637 -9.17767 -6.49259 0.35078 0.45694 0.81596 0.90040 1.27629 1.48770 1.69590 1.77592 2.11930 2.13920 2.68556 2.88264 3.47818 3.62416 3.86712 3.99015 4.08233 4.14050 4.18598 4.22982 4.24058 4.31794 4.34485 4.45458 4.51505 4.55472 4.61701 4.64271 4.67596 4.75477 4.83993 4.92294 4.94803 4.97473 5.04490 5.10644 5.20879 5.24710 5.48864 5.51530 5.54799 5.57527 5.59658 5.72054 5.82613 5.89038 6.02834 6.07553 6.18224 6.42375 6.49050 6.73491 6.87636 7.34067 8.03930 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.004854 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.631271 B = 5767.355869 C = 7094.908892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.171 3.829 3 H 0.070 0.930 4 C -0.105 4.105 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.128 4.128 8 C -0.132 4.132 9 C -0.134 4.134 10 N -0.611 5.611 11 C 0.063 3.937 12 C 0.517 3.483 13 O -0.574 6.574 14 C -0.065 4.065 15 C -0.178 4.178 16 C -0.078 4.078 17 C -0.232 4.232 18 C -0.087 4.087 19 C -0.270 4.270 20 C 0.086 3.914 21 C -0.529 4.529 22 H 0.056 0.944 23 C 0.013 3.987 24 N -0.850 5.850 25 Si 1.099 2.901 26 H -0.255 1.255 27 H -0.279 1.279 28 H -0.288 1.288 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.097 0.903 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.288 -4.319 4.306 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.068 3.932 3 H 0.088 0.912 4 C -0.106 4.106 5 C -0.135 4.135 6 C -0.143 4.143 7 C -0.146 4.146 8 C -0.150 4.150 9 C -0.153 4.153 10 N -0.345 5.345 11 C -0.079 4.079 12 C 0.307 3.693 13 O -0.452 6.452 14 C -0.105 4.105 15 C -0.180 4.180 16 C -0.096 4.096 17 C -0.251 4.251 18 C -0.105 4.105 19 C -0.289 4.289 20 C 0.083 3.917 21 C -0.559 4.559 22 H 0.074 0.926 23 C -0.200 4.200 24 N -0.475 5.475 25 Si 0.924 3.076 26 H -0.181 1.181 27 H -0.205 1.205 28 H -0.215 1.215 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.115 0.885 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.903 -2.798 4.982 15.961 hybrid contribution -0.477 -1.152 -0.112 1.252 sum -15.380 -3.950 4.871 16.609 Atomic orbital electron populations 1.22041 0.91122 1.03922 1.02973 1.19916 0.96023 0.95647 0.81621 0.91183 1.20240 0.99062 0.95644 0.95634 1.21444 1.00341 0.93331 0.98348 1.21527 0.97798 1.01072 0.93907 1.21504 0.98552 0.94151 1.00375 1.21378 0.99974 0.95916 0.97708 1.21245 0.98457 1.00203 0.95367 1.47994 1.46035 1.16957 1.23511 1.22223 1.01544 0.80998 1.03087 1.21151 0.77108 0.86094 0.84994 1.90634 1.57817 1.21346 1.75438 1.20313 0.98677 0.97868 0.93623 1.19512 0.92958 1.04415 1.01070 1.20881 0.98953 0.95063 0.94686 1.20872 0.93622 1.05735 1.04899 1.20993 0.96295 0.97317 0.95897 1.21287 0.98617 1.06843 1.02118 1.17777 0.91923 0.90454 0.91523 1.20464 1.13154 1.07109 1.15171 0.92624 1.27866 0.92141 1.08070 0.91900 1.70604 1.35049 1.06513 1.35360 0.83255 0.77066 0.71071 0.76247 1.18116 1.20457 1.21512 0.89810 0.90511 0.91839 0.83469 0.83243 0.83840 0.84986 0.87396 0.92609 0.87823 0.89321 0.86310 0.89745 0.85682 0.85304 0.85784 0.88510 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.88 71.98 0.64 -2.20 16 2 C 0.17 5.00 2.95 44.25 0.13 5.13 16 3 H 0.07 2.55 6.66 -2.39 -0.02 2.53 16 4 C -0.10 -3.01 4.97 -19.87 -0.10 -3.11 16 5 C -0.12 -2.72 7.99 22.27 0.18 -2.54 16 6 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 7 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 8 C -0.13 -3.55 10.05 22.27 0.22 -3.32 16 9 C -0.13 -4.15 9.67 22.27 0.22 -3.94 16 10 N -0.61 -18.86 2.75 -826.78 -2.28 -21.13 16 11 C 0.06 1.30 8.27 127.77 1.06 2.35 16 12 C 0.52 21.14 7.67 87.66 0.67 21.81 16 13 O -0.57 -29.45 15.37 -3.03 -0.05 -29.50 16 14 C -0.07 -2.52 3.83 29.10 0.11 -2.41 16 15 C -0.18 -8.28 4.43 -19.41 -0.09 -8.37 16 16 C -0.08 -3.21 9.66 22.22 0.21 -3.00 16 17 C -0.23 -9.39 10.05 22.46 0.23 -9.17 16 18 C -0.09 -3.81 10.02 22.22 0.22 -3.59 16 19 C -0.27 -13.73 7.26 22.73 0.16 -13.56 16 20 C 0.09 4.58 5.18 -21.29 -0.11 4.47 16 21 C -0.53 -30.29 8.84 23.46 0.21 -30.09 16 22 H 0.06 3.26 6.55 -2.91 -0.02 3.24 16 23 C 0.01 0.77 5.43 85.26 0.46 1.23 16 24 N -0.85 -49.68 13.65 21.83 0.30 -49.38 16 25 Si 1.10 55.63 24.85 68.60 1.70 57.34 16 26 H -0.26 -11.74 6.42 99.48 0.64 -11.10 16 27 H -0.28 -14.89 6.98 99.48 0.69 -14.20 16 28 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 29 H 0.08 1.25 6.02 -2.39 -0.01 1.23 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 32 H 0.15 2.59 5.04 -2.91 -0.01 2.57 16 33 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.11 3.48 7.95 -2.91 -0.02 3.46 16 37 H 0.06 1.18 6.86 -2.39 -0.02 1.17 16 38 H 0.10 1.39 5.68 -2.39 -0.01 1.37 16 39 H 0.09 1.61 6.25 -2.39 -0.01 1.59 16 40 H 0.12 3.45 7.33 -2.39 -0.02 3.43 16 41 H 0.08 3.38 6.46 -2.38 -0.02 3.36 16 42 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 43 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 45 H 0.10 4.95 4.18 -2.91 -0.01 4.94 16 46 H 0.28 15.83 8.73 -92.71 -0.81 15.02 16 Total: -1.00 -74.91 364.73 5.43 -69.47 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.87 Total: 28.66 kcal Atomic # 6 Polarization: -60.34 SS G_CDS: 4.88 Total: -55.46 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -1.98 Total: -70.51 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.05 Total: -29.50 kcal Atomic # 14 Polarization: 55.63 SS G_CDS: 1.70 Total: 57.34 kcal Total: -74.91 5.43 -69.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776750607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.360 kcal (2) G-P(sol) polarization free energy of solvation -74.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds