Wall clock time and date at job start Tue Mar 31 2020 14:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53005 * 109.47174 * 2 1 4 4 C 1.53003 * 109.47519 * 240.00023 * 2 1 3 5 5 O 1.45198 * 109.47444 * 119.99982 * 2 1 3 6 6 C 1.34779 * 116.99958 * 60.00054 * 5 2 1 7 7 O 1.21542 * 120.00195 * 0.02562 * 6 5 2 8 8 C 1.47171 * 120.00343 * 180.02562 * 6 5 2 9 9 C 1.39877 * 120.18521 * 5.78723 * 8 6 5 10 10 C 1.37607 * 119.94612 * 179.97438 * 9 8 6 11 11 C 1.38930 * 120.33285 * 359.97438 * 10 9 8 12 12 F 1.35093 * 119.80993 * 180.02562 * 11 10 9 13 13 C 1.38245 * 120.37857 * 359.76906 * 11 10 9 14 14 C 1.38830 * 120.04786 * 0.50937 * 13 11 10 15 15 N 1.38834 * 120.16249 * 179.74560 * 14 13 11 16 16 C 1.46498 * 120.00525 * 354.22466 * 15 14 13 17 17 C 1.53002 * 109.47208 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.47012 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47431 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99458 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00290 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00080 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47019 * 59.99982 * 23 21 19 25 25 H 1.48497 * 109.47204 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46850 * 300.00312 * 23 21 19 27 27 H 1.09000 * 109.47414 * 299.99790 * 1 2 3 28 28 H 1.08999 * 109.47568 * 59.99939 * 1 2 3 29 29 H 1.09003 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47329 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46923 * 300.00457 * 3 2 1 32 32 H 1.09000 * 109.46778 * 59.99821 * 3 2 1 33 33 H 1.08994 * 109.46880 * 300.00108 * 4 2 1 34 34 H 1.09006 * 109.46972 * 59.99787 * 4 2 1 35 35 H 1.08998 * 109.47378 * 179.97438 * 4 2 1 36 36 H 1.07997 * 120.02594 * 0.02562 * 9 8 6 37 37 H 1.07991 * 119.82947 * 180.02562 * 10 9 8 38 38 H 1.08006 * 119.97763 * 180.25529 * 13 11 10 39 39 H 0.97008 * 119.99802 * 174.22991 * 15 14 13 40 40 H 1.08998 * 109.46784 * 60.00258 * 16 15 14 41 41 H 1.09002 * 109.47299 * 300.00013 * 16 15 14 42 42 H 1.09002 * 109.47363 * 299.99854 * 17 16 15 43 43 H 1.08998 * 109.47125 * 60.00359 * 17 16 15 44 44 H 1.09002 * 109.47291 * 299.99780 * 18 17 16 45 45 H 1.08998 * 109.47251 * 59.99663 * 18 17 16 46 46 H 0.97000 * 119.99897 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6519 -1.9737 1.3385 7 8 0.9511 -2.5112 0.5035 8 6 2.1050 -2.7306 2.5165 9 6 2.8091 -2.0856 3.5387 10 6 3.2300 -2.7980 4.6382 11 6 2.9589 -4.1568 4.7397 12 9 3.3767 -4.8458 5.8240 13 6 2.2595 -4.8068 3.7399 14 6 1.8324 -4.1046 2.6210 15 7 1.1345 -4.7561 1.6130 16 6 0.9566 -6.2093 1.6664 17 6 0.1589 -6.6706 0.4450 18 6 -0.0274 -8.1882 0.5010 19 6 -0.8125 -8.6428 -0.7023 20 1 -1.1449 -7.9214 -1.4341 21 6 -1.1054 -9.9796 -0.8695 22 7 -0.7002 -10.8581 0.0214 23 14 -2.0792 -10.5430 -2.3608 24 1 -1.3437 -10.1794 -3.5985 25 1 -2.2600 -12.0159 -2.3064 26 1 -3.4087 -9.8813 -2.3626 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6765 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2492 34 1 1.6766 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2494 36 1 3.0214 -1.0293 3.4654 37 1 3.7730 -2.2981 5.4264 38 1 2.0488 -5.8625 3.8274 39 1 0.7646 -4.2491 0.8733 40 1 0.4170 -6.4761 2.5751 41 1 1.9324 -6.6950 1.6673 42 1 -0.8169 -6.1850 0.4436 43 1 0.6989 -6.4039 -0.4635 44 1 0.9483 -8.6743 0.5026 45 1 -0.5674 -8.4546 1.4096 46 1 -0.9066 -11.7985 -0.0960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:54 Heat of formation + Delta-G solvation = -122.185230 kcal Electronic energy + Delta-G solvation = -27192.989770 eV Core-core repulsion = 23189.543865 eV Total energy + Delta-G solvation = -4003.445904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.05071 -41.09805 -39.28343 -36.99315 -36.15478 -34.27202 -33.60774 -31.67742 -31.00082 -29.21941 -27.67089 -27.60605 -26.44729 -24.42471 -23.68618 -22.00659 -21.66666 -20.42140 -19.76883 -17.93268 -17.82970 -16.93584 -16.54722 -16.16279 -16.01008 -15.68644 -15.44493 -15.07410 -14.88980 -14.62763 -14.51304 -14.39679 -13.97319 -13.85395 -13.05794 -13.03129 -12.89951 -12.74270 -12.41936 -12.33369 -12.14606 -12.13854 -11.87212 -11.83110 -11.60399 -11.43814 -11.34759 -10.92629 -10.74775 -10.61340 -10.59660 -10.22977 -10.01910 -9.75082 -9.50223 -9.17133 -9.02054 -8.39024 -7.57464 -6.04137 -4.06935 0.57417 1.38186 2.38942 2.50859 3.31554 3.35877 3.38036 3.47539 3.60785 4.13938 4.43299 4.44184 4.50932 4.52236 4.63052 4.67003 4.93035 5.13532 5.21631 5.27476 5.29273 5.31870 5.43877 5.47152 5.55314 5.58942 5.61132 5.63623 5.73210 5.77130 5.87486 6.00603 6.02564 6.04700 6.08564 6.11434 6.33272 6.52070 6.53278 6.70351 6.95155 7.26834 7.59331 7.66389 7.71543 7.94202 8.00999 8.36231 8.99192 9.57449 11.07191 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.003157 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.483664 B = 8868.027480 C =11468.705371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.118 3.882 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.347 6.347 6 C 0.527 3.473 7 O -0.516 6.516 8 C -0.244 4.244 9 C 0.018 3.982 10 C -0.242 4.242 11 C 0.188 3.812 12 F -0.134 7.134 13 C -0.254 4.254 14 C 0.315 3.685 15 N -0.707 5.707 16 C 0.105 3.895 17 C -0.119 4.119 18 C 0.026 3.974 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.420 0.580 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 24.361 5.923 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.082 3.918 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.264 6.264 6 C 0.376 3.624 7 O -0.407 6.407 8 C -0.251 4.251 9 C 0.000 4.000 10 C -0.264 4.264 11 C 0.167 3.833 12 F -0.112 7.112 13 C -0.278 4.278 14 C 0.198 3.802 15 N -0.339 5.339 16 C -0.018 4.018 17 C -0.157 4.157 18 C -0.012 4.012 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.269 0.731 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.893 23.811 5.634 25.710 hybrid contribution -0.633 -0.424 -0.921 1.195 sum 7.260 23.386 4.713 24.937 Atomic orbital electron populations 1.22503 0.93925 1.05055 1.02626 1.22176 0.94477 0.92111 0.82996 1.21848 1.02198 0.92633 1.03024 1.22508 1.01672 1.03444 0.96516 1.86578 1.69857 1.24767 1.45185 1.20753 0.76610 0.80122 0.84876 1.90449 1.37251 1.69051 1.43923 1.18465 1.16155 0.92369 0.98109 1.20943 0.89564 0.99613 0.89917 1.20719 1.10829 0.92590 1.02214 1.17661 0.93056 0.89787 0.82807 1.91515 1.87576 1.79695 1.52455 1.20574 1.09931 1.02152 0.95123 1.17466 0.86364 0.88946 0.87377 1.46156 1.54437 1.08849 1.24467 1.21881 1.00699 0.78219 1.00994 1.21849 0.98330 1.00895 0.94672 1.19023 0.97270 0.87404 0.97491 1.21169 1.34783 0.92599 1.07584 0.92668 1.25015 0.96009 0.96857 0.96496 1.69948 1.46291 1.02126 1.35040 0.86634 0.80579 0.77484 0.83181 1.20209 1.21240 1.20210 0.92049 0.91079 0.89520 0.91472 0.90355 0.91501 0.89501 0.91074 0.92019 0.84038 0.84601 0.83637 0.73122 0.91772 0.91764 0.92578 0.92592 0.96310 0.96295 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.37 37.15 0.31 -1.45 16 2 C 0.12 1.13 1.13 -90.62 -0.10 1.02 16 3 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 4 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 5 O -0.35 -3.89 9.15 -40.71 -0.37 -4.26 16 6 C 0.53 6.90 7.17 34.36 0.25 7.15 16 7 O -0.52 -7.58 9.18 -19.30 -0.18 -7.76 16 8 C -0.24 -3.12 5.89 -104.82 -0.62 -3.74 16 9 C 0.02 0.19 9.60 -39.20 -0.38 -0.19 16 10 C -0.24 -2.47 10.00 -39.56 -0.40 -2.87 16 11 C 0.19 2.27 7.30 -39.32 -0.29 1.98 16 12 F -0.13 -1.66 17.26 2.25 0.04 -1.62 16 13 C -0.25 -3.39 9.27 -39.36 -0.37 -3.75 16 14 C 0.31 4.46 6.65 -83.63 -0.56 3.90 16 15 N -0.71 -11.03 5.58 -58.45 -0.33 -11.36 16 16 C 0.11 1.77 4.94 -4.04 -0.02 1.75 16 17 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 18 C 0.03 0.65 4.97 -27.88 -0.14 0.51 16 19 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 20 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 23 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.14 1.13 7.62 -52.49 -0.40 0.73 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.15 1.92 6.71 -52.48 -0.35 1.57 16 39 H 0.42 6.82 4.98 -40.95 -0.20 6.62 16 40 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 41 H 0.06 1.06 8.13 -51.93 -0.42 0.64 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -30.08 378.28 -8.64 -38.72 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.00 Total: 3.79 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.21 Total: -13.84 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.41 Total: -37.35 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.55 Total: -12.02 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.08 -8.64 -38.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.462 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds