Wall clock time and date at job start Tue Mar 31 2020 14:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81402 * 109.46769 * 2 1 4 4 C 1.81409 * 102.99752 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46905 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47292 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47008 * 305.00383 * 6 5 4 8 8 C 1.53000 * 109.47355 * 185.00129 * 6 5 4 9 9 N 1.46896 * 109.47290 * 64.99559 * 6 5 4 10 10 C 1.46893 * 111.00512 * 210.35879 * 9 6 5 11 11 H 1.08996 * 109.47593 * 29.60740 * 10 9 6 12 12 C 1.53009 * 109.46859 * 269.61085 * 10 9 6 13 13 C 1.50697 * 109.47783 * 149.61160 * 10 9 6 14 14 C 1.38308 * 119.92948 * 39.72516 * 13 10 9 15 15 C 1.38094 * 120.06880 * 179.73079 * 14 13 10 16 16 C 1.38877 * 119.93043 * 0.54354 * 15 14 13 17 17 O 1.35754 * 120.07037 * 179.75206 * 16 15 14 18 18 C 1.34823 * 117.00244 * 185.80431 * 17 16 15 19 19 H 1.08007 * 119.99982 * 5.48546 * 18 17 16 20 20 C 1.38653 * 120.00447 * 185.49027 * 18 17 16 21 21 N 1.31562 * 119.99757 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00380 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47426 * 59.99857 * 22 20 18 24 24 H 1.48500 * 109.47080 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46751 * 299.99358 * 22 20 18 26 26 C 1.38876 * 119.86132 * 359.72849 * 16 15 14 27 27 C 1.38093 * 119.93246 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47064 * 300.00056 * 1 2 3 30 30 H 1.08997 * 109.46927 * 60.00411 * 1 2 3 31 31 H 1.08998 * 109.47064 * 239.99944 * 2 1 3 32 32 H 1.08998 * 109.47404 * 120.00188 * 2 1 3 33 33 H 1.08993 * 109.47113 * 60.00097 * 4 3 2 34 34 H 1.08999 * 109.46684 * 300.00111 * 4 3 2 35 35 H 1.09006 * 109.47659 * 59.99726 * 5 4 3 36 36 H 1.08999 * 109.47536 * 299.99584 * 5 4 3 37 37 H 1.08997 * 109.47040 * 54.73226 * 8 6 5 38 38 H 1.09005 * 109.46768 * 174.73085 * 8 6 5 39 39 H 1.08998 * 109.46862 * 294.73010 * 8 6 5 40 40 H 1.00898 * 111.00167 * 86.39957 * 9 6 5 41 41 H 1.09001 * 109.46939 * 185.27079 * 12 10 9 42 42 H 1.08998 * 109.47237 * 305.26801 * 12 10 9 43 43 H 1.08996 * 109.46953 * 65.27010 * 12 10 9 44 44 H 1.07997 * 119.96360 * 359.97438 * 14 13 10 45 45 H 1.08006 * 120.03670 * 180.27220 * 15 14 13 46 46 H 0.97002 * 120.00052 * 180.02562 * 21 20 18 47 47 H 1.08007 * 120.03341 * 179.97438 * 26 16 15 48 48 H 1.08005 * 119.96505 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9372 1.5059 -0.0008 5 6 4.6064 2.8817 -0.0002 6 6 6.1266 2.7094 -0.0002 7 1 6.4213 2.0823 0.8413 8 6 6.7953 4.0797 0.1261 9 7 6.5473 2.0731 -1.2556 10 6 7.7546 1.2606 -1.0553 11 1 7.7720 0.8813 -0.0337 12 6 8.9953 2.1218 -1.3007 13 6 7.7475 0.1035 -2.0207 14 6 7.3120 0.2914 -3.3199 15 6 7.3094 -0.7656 -4.2086 16 6 7.7342 -2.0209 -3.7933 17 8 7.7281 -3.0632 -4.6632 18 6 8.0373 -4.2775 -4.1656 19 1 8.1883 -4.4035 -3.1036 20 6 8.1616 -5.3646 -5.0172 21 7 7.9773 -5.2113 -6.3108 22 14 8.5893 -7.0472 -4.3277 23 1 7.5430 -7.4666 -3.3610 24 1 8.6618 -8.0325 -5.4364 25 1 9.9026 -6.9801 -3.6378 26 6 8.1656 -2.2077 -2.4866 27 6 8.1706 -1.1455 -1.6041 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.2399 0.9546 -0.8909 34 1 4.2406 0.9542 0.8890 35 1 4.3036 3.4328 0.8902 36 1 4.3030 3.4337 -0.8898 37 1 6.4121 4.5909 1.0092 38 1 7.8736 3.9506 0.2202 39 1 6.5766 4.6738 -0.7612 40 1 6.6905 2.7612 -1.9795 41 1 9.8875 1.4981 -1.2442 42 1 8.9322 2.5768 -2.2892 43 1 9.0502 2.9039 -0.5435 44 1 6.9772 1.2668 -3.6409 45 1 6.9733 -0.6172 -5.2242 46 1 8.0639 -5.9718 -6.9066 47 1 8.4962 -3.1829 -2.1606 48 1 8.5064 -1.2901 -0.5878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164591953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:13 Heat of formation + Delta-G solvation = -23.386501 kcal Electronic energy + Delta-G solvation = -24695.061972 eV Core-core repulsion = 21262.113479 eV Total energy + Delta-G solvation = -3432.948494 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.27843 -38.16621 -36.37915 -33.75594 -32.91441 -32.20291 -30.57407 -30.13225 -28.42490 -27.88052 -25.36991 -24.53508 -23.06163 -22.64137 -21.94846 -20.72838 -19.99902 -17.90762 -16.97677 -16.23329 -15.89176 -15.77990 -15.02353 -14.85336 -14.56330 -14.53000 -14.19070 -13.90310 -13.71452 -13.54578 -13.40544 -13.25536 -12.96041 -12.68901 -12.65651 -12.54498 -12.35393 -12.01627 -11.84166 -11.69014 -11.62241 -11.38924 -11.33061 -11.13087 -11.00262 -10.98735 -10.69359 -10.57184 -10.37068 -10.22590 -9.98152 -9.33029 -8.79685 -8.37833 -8.11147 -7.72127 -7.11058 -6.42757 -4.01552 1.62604 2.27467 2.37812 2.56983 3.13649 3.14397 3.17348 3.98242 4.12498 4.57036 4.61143 4.77753 4.81807 4.89089 4.98288 5.04700 5.13455 5.15068 5.22868 5.25418 5.31868 5.34362 5.42199 5.49645 5.56401 5.58487 5.62351 5.68479 5.71489 5.80966 5.82989 5.87889 5.92476 5.97814 6.01563 6.08111 6.20488 6.27560 6.47431 6.76052 6.90224 7.06169 7.10966 7.33424 7.41859 7.47187 7.49846 7.88209 8.02376 9.02981 9.74744 10.75468 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.003011 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.315930 B = 9296.480718 C =11343.072131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 S -0.288 6.288 4 C -0.069 4.069 5 C -0.087 4.087 6 C 0.088 3.912 7 H 0.076 0.924 8 C -0.183 4.183 9 N -0.674 5.674 10 C 0.142 3.858 11 H 0.072 0.928 12 C -0.177 4.177 13 C -0.166 4.166 14 C -0.051 4.051 15 C -0.195 4.195 16 C 0.153 3.847 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.939 3.061 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.234 4.234 27 C -0.070 4.070 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.341 0.659 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.109 0.891 45 H 0.114 0.886 46 H 0.270 0.730 47 H 0.124 0.876 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 15.029 14.236 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.234 4.234 3 S -0.062 6.062 4 C -0.217 4.217 5 C -0.126 4.126 6 C -0.024 4.024 7 H 0.094 0.906 8 C -0.242 4.242 9 N -0.305 5.305 10 C 0.033 3.967 11 H 0.091 0.909 12 C -0.236 4.236 13 C -0.168 4.168 14 C -0.069 4.069 15 C -0.215 4.215 16 C 0.099 3.901 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.253 4.253 27 C -0.089 4.089 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.160 0.840 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.080 0.920 47 H 0.142 0.858 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.972 15.230 13.842 21.730 hybrid contribution 1.707 -1.389 0.460 2.248 sum -5.266 13.841 14.302 20.587 Atomic orbital electron populations 1.21511 0.92472 1.02448 1.02948 1.23258 0.99908 0.95173 1.05107 1.86693 1.07808 1.13463 1.98207 1.23307 0.90875 1.01712 1.05840 1.21310 0.93872 0.94907 1.02550 1.21632 0.93948 0.93866 0.92960 0.90588 1.22628 1.01166 0.98078 1.02334 1.60649 1.35178 1.27395 1.07234 1.20256 0.87082 0.91697 0.97677 0.90947 1.22615 0.99672 0.99908 1.01385 1.19093 1.09040 0.93826 0.94824 1.20309 0.97126 0.97098 0.92398 1.20215 1.09481 0.91383 1.00396 1.19402 0.92501 0.88760 0.89398 1.83991 1.76109 1.14298 1.33973 1.21246 1.49537 0.82191 0.93764 0.89283 1.25269 0.96780 0.99373 0.95093 1.70031 1.45617 1.31830 1.02443 0.85809 0.79234 0.80179 0.78368 1.19543 1.20287 1.19551 1.21097 1.09837 0.99858 0.94498 1.20532 0.98301 0.92152 0.97878 0.91190 0.91946 0.91713 0.89822 0.90331 0.88172 0.90967 0.91462 0.90989 0.92250 0.92105 0.92299 0.83961 0.91974 0.92397 0.93022 0.87319 0.86807 0.92023 0.85802 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.92 37.16 0.37 -0.78 16 2 C -0.09 -0.87 6.66 37.16 0.25 -0.62 16 3 S -0.29 -3.30 21.74 -107.50 -2.34 -5.63 16 4 C -0.07 -0.75 5.83 37.15 0.22 -0.54 16 5 C -0.09 -0.81 4.90 -26.73 -0.13 -0.94 16 6 C 0.09 0.78 2.62 -67.71 -0.18 0.60 16 7 H 0.08 0.70 7.27 -51.92 -0.38 0.33 16 8 C -0.18 -1.36 8.98 37.16 0.33 -1.03 16 9 N -0.67 -7.19 4.86 -100.96 -0.49 -7.68 16 10 C 0.14 1.72 2.82 -68.87 -0.19 1.52 16 11 H 0.07 0.86 7.13 -51.93 -0.37 0.49 16 12 C -0.18 -1.90 8.96 37.16 0.33 -1.56 16 13 C -0.17 -2.69 4.96 -104.58 -0.52 -3.21 16 14 C -0.05 -0.88 9.32 -39.61 -0.37 -1.25 16 15 C -0.20 -4.14 9.99 -39.40 -0.39 -4.53 16 16 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 17 O -0.18 -5.19 9.76 0.06 0.00 -5.19 16 18 C -0.39 -11.01 9.44 30.89 0.29 -10.72 16 19 H 0.09 2.32 5.30 -52.48 -0.28 2.04 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 22 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 C -0.23 -5.06 9.13 -39.40 -0.36 -5.42 16 27 C -0.07 -1.25 9.66 -39.61 -0.38 -1.64 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.30 7.75 -51.93 -0.40 0.90 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.45 5.75 -51.93 -0.30 0.16 16 39 H 0.06 0.43 8.02 -51.93 -0.42 0.01 16 40 H 0.34 3.43 7.51 -39.29 -0.29 3.13 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.62 8.02 -51.93 -0.42 0.21 16 43 H 0.05 0.46 5.75 -51.93 -0.30 0.16 16 44 H 0.11 1.62 7.41 -52.49 -0.39 1.24 16 45 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.12 2.71 5.72 -52.48 -0.30 2.41 16 48 H 0.10 1.57 8.03 -52.48 -0.42 1.15 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -30.04 397.68 -10.24 -40.28 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.05 Total: 7.09 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -1.09 Total: -25.69 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.27 Total: -32.45 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.34 Total: -5.63 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.04 -10.24 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164591953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.897 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds