Wall clock time and date at job start Tue Mar 31 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81402 * 109.46769 * 2 1 4 4 C 1.81409 * 102.99752 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46905 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47292 * 179.97438 * 5 4 3 7 7 H 1.09007 * 109.47008 * 305.00383 * 6 5 4 8 8 C 1.53000 * 109.47355 * 185.00129 * 6 5 4 9 9 N 1.46896 * 109.47290 * 64.99559 * 6 5 4 10 10 C 1.46893 * 111.00512 * 210.35879 * 9 6 5 11 11 H 1.08996 * 109.47593 * 29.60740 * 10 9 6 12 12 C 1.53009 * 109.46859 * 269.61085 * 10 9 6 13 13 C 1.50697 * 109.47783 * 149.61160 * 10 9 6 14 14 C 1.38308 * 119.92948 * 39.72516 * 13 10 9 15 15 C 1.38094 * 120.06880 * 179.73079 * 14 13 10 16 16 C 1.38877 * 119.93043 * 0.54354 * 15 14 13 17 17 O 1.35754 * 120.07037 * 179.75206 * 16 15 14 18 18 C 1.34823 * 117.00244 * 185.80431 * 17 16 15 19 19 H 1.08007 * 119.99982 * 5.48546 * 18 17 16 20 20 C 1.38653 * 120.00447 * 185.49027 * 18 17 16 21 21 N 1.31562 * 119.99757 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00380 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47426 * 59.99857 * 22 20 18 24 24 H 1.48500 * 109.47080 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46751 * 299.99358 * 22 20 18 26 26 C 1.38876 * 119.86132 * 359.72849 * 16 15 14 27 27 C 1.38093 * 119.93246 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.46985 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47064 * 300.00056 * 1 2 3 30 30 H 1.08997 * 109.46927 * 60.00411 * 1 2 3 31 31 H 1.08998 * 109.47064 * 239.99944 * 2 1 3 32 32 H 1.08998 * 109.47404 * 120.00188 * 2 1 3 33 33 H 1.08993 * 109.47113 * 60.00097 * 4 3 2 34 34 H 1.08999 * 109.46684 * 300.00111 * 4 3 2 35 35 H 1.09006 * 109.47659 * 59.99726 * 5 4 3 36 36 H 1.08999 * 109.47536 * 299.99584 * 5 4 3 37 37 H 1.08997 * 109.47040 * 54.73226 * 8 6 5 38 38 H 1.09005 * 109.46768 * 174.73085 * 8 6 5 39 39 H 1.08998 * 109.46862 * 294.73010 * 8 6 5 40 40 H 1.00898 * 111.00167 * 86.39957 * 9 6 5 41 41 H 1.09001 * 109.46939 * 185.27079 * 12 10 9 42 42 H 1.08998 * 109.47237 * 305.26801 * 12 10 9 43 43 H 1.08996 * 109.46953 * 65.27010 * 12 10 9 44 44 H 1.07997 * 119.96360 * 359.97438 * 14 13 10 45 45 H 1.08006 * 120.03670 * 180.27220 * 15 14 13 46 46 H 0.97002 * 120.00052 * 180.02562 * 21 20 18 47 47 H 1.08007 * 120.03341 * 179.97438 * 26 16 15 48 48 H 1.08005 * 119.96505 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9372 1.5059 -0.0008 5 6 4.6064 2.8817 -0.0002 6 6 6.1266 2.7094 -0.0002 7 1 6.4213 2.0823 0.8413 8 6 6.7953 4.0797 0.1261 9 7 6.5473 2.0731 -1.2556 10 6 7.7546 1.2606 -1.0553 11 1 7.7720 0.8813 -0.0337 12 6 8.9953 2.1218 -1.3007 13 6 7.7475 0.1035 -2.0207 14 6 7.3120 0.2914 -3.3199 15 6 7.3094 -0.7656 -4.2086 16 6 7.7342 -2.0209 -3.7933 17 8 7.7281 -3.0632 -4.6632 18 6 8.0373 -4.2775 -4.1656 19 1 8.1883 -4.4035 -3.1036 20 6 8.1616 -5.3646 -5.0172 21 7 7.9773 -5.2113 -6.3108 22 14 8.5893 -7.0472 -4.3277 23 1 7.5430 -7.4666 -3.3610 24 1 8.6618 -8.0325 -5.4364 25 1 9.9026 -6.9801 -3.6378 26 6 8.1656 -2.2077 -2.4866 27 6 8.1706 -1.1455 -1.6041 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 4.2399 0.9546 -0.8909 34 1 4.2406 0.9542 0.8890 35 1 4.3036 3.4328 0.8902 36 1 4.3030 3.4337 -0.8898 37 1 6.4121 4.5909 1.0092 38 1 7.8736 3.9506 0.2202 39 1 6.5766 4.6738 -0.7612 40 1 6.6905 2.7612 -1.9795 41 1 9.8875 1.4981 -1.2442 42 1 8.9322 2.5768 -2.2892 43 1 9.0502 2.9039 -0.5435 44 1 6.9772 1.2668 -3.6409 45 1 6.9733 -0.6172 -5.2242 46 1 8.0639 -5.9718 -6.9066 47 1 8.4962 -3.1829 -2.1606 48 1 8.5064 -1.2901 -0.5878 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164591953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:12 Heat of formation + Delta-G solvation = -39.365085 kcal Electronic energy + Delta-G solvation = -24695.754856 eV Core-core repulsion = 21262.113479 eV Total energy + Delta-G solvation = -3433.641377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84030 -39.40443 -37.82330 -34.89677 -34.12375 -33.66636 -31.80956 -31.44982 -29.49423 -29.00937 -27.33692 -25.28998 -24.02449 -23.84116 -23.43888 -21.66558 -21.30015 -19.74306 -18.80262 -17.10255 -16.96418 -16.82130 -16.30287 -16.12448 -15.72309 -15.65158 -15.52416 -15.45310 -15.05206 -14.68818 -14.50837 -14.35718 -14.07164 -13.94246 -13.82213 -13.50407 -13.41336 -13.36118 -12.95920 -12.73137 -12.66965 -12.52237 -12.46956 -12.30861 -12.18423 -12.10145 -12.01753 -11.84413 -11.73093 -11.20332 -11.16448 -10.86462 -10.75948 -9.71753 -9.22575 -8.82225 -8.63606 -8.46159 -6.14044 0.65793 0.77409 0.78719 1.33907 1.44987 1.50361 1.71095 2.18189 2.83897 3.15555 3.35002 3.56182 3.84635 3.99801 4.04080 4.06671 4.12981 4.15214 4.20740 4.25113 4.37300 4.45373 4.49982 4.53420 4.59291 4.64369 4.74392 4.76152 4.85383 4.86650 4.89364 4.91964 4.99845 5.08580 5.14299 5.15969 5.19065 5.22128 5.25535 5.28519 5.35136 5.47201 5.65365 5.76083 5.84732 6.04767 6.26508 6.34381 6.61336 6.98676 7.81943 8.77341 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.003011 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.315930 B = 9296.480718 C =11343.072131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 S -0.314 6.314 4 C -0.060 4.060 5 C -0.081 4.081 6 C 0.094 3.906 7 H 0.079 0.921 8 C -0.177 4.177 9 N -0.684 5.684 10 C 0.148 3.852 11 H 0.085 0.915 12 C -0.172 4.172 13 C -0.138 4.138 14 C -0.044 4.044 15 C -0.208 4.208 16 C 0.109 3.891 17 O -0.236 6.236 18 C -0.412 4.412 19 H 0.099 0.901 20 C -0.024 4.024 21 N -0.923 5.923 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.243 4.243 27 C -0.070 4.070 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.347 0.653 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.140 0.860 45 H 0.106 0.894 46 H 0.272 0.728 47 H 0.114 0.886 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 16.935 17.479 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.232 4.232 3 S -0.088 6.088 4 C -0.208 4.208 5 C -0.120 4.120 6 C -0.018 4.018 7 H 0.097 0.903 8 C -0.236 4.236 9 N -0.315 5.315 10 C 0.038 3.962 11 H 0.103 0.897 12 C -0.231 4.231 13 C -0.139 4.139 14 C -0.062 4.062 15 C -0.228 4.228 16 C 0.059 3.941 17 O -0.144 6.144 18 C -0.489 4.489 19 H 0.116 0.884 20 C -0.221 4.221 21 N -0.561 5.561 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.181 1.181 26 C -0.262 4.262 27 C -0.089 4.089 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.167 0.833 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.158 0.842 45 H 0.124 0.876 46 H 0.081 0.919 47 H 0.132 0.868 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.679 17.199 17.126 25.174 hybrid contribution 1.535 -1.633 -0.378 2.273 sum -5.144 15.566 16.748 23.436 Atomic orbital electron populations 1.21515 0.91244 1.03366 1.02940 1.23316 1.00987 0.94015 1.04892 1.86767 1.08823 1.14990 1.98200 1.23257 0.90271 1.02520 1.04790 1.21291 0.94106 0.93833 1.02759 1.21599 0.93457 0.94781 0.91922 0.90316 1.22552 1.01167 0.96934 1.02961 1.60515 1.34353 1.28133 1.08542 1.20205 0.88595 0.90629 0.96735 0.89677 1.22556 0.98111 1.00066 1.02357 1.19702 1.04461 0.94760 0.94957 1.20652 0.96010 0.97190 0.92325 1.20465 1.09696 0.91557 1.01061 1.19929 0.94765 0.89002 0.90397 1.83945 1.79107 1.15341 1.35962 1.21742 1.49732 0.82860 0.94535 0.88371 1.26580 0.96417 1.03773 0.95339 1.70185 1.48442 1.33285 1.04205 0.84671 0.79600 0.74183 0.77904 1.18226 1.19596 1.18095 1.21197 1.10018 1.00802 0.94165 1.20913 0.97534 0.91611 0.98805 0.89785 0.91465 0.92180 0.90884 0.89634 0.90403 0.90612 0.90424 0.91580 0.91312 0.91675 0.92045 0.83277 0.92756 0.92358 0.90536 0.84194 0.87570 0.91894 0.86783 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.92 71.98 0.71 -1.39 16 2 C -0.08 -1.63 6.66 71.98 0.48 -1.15 16 3 S -0.31 -6.85 21.74 -56.49 -1.23 -8.08 16 4 C -0.06 -1.21 5.83 71.98 0.42 -0.79 16 5 C -0.08 -1.28 4.90 30.59 0.15 -1.13 16 6 C 0.09 1.31 2.62 44.92 0.12 1.43 16 7 H 0.08 1.11 7.27 -2.38 -0.02 1.09 16 8 C -0.18 -1.87 8.98 71.98 0.65 -1.22 16 9 N -0.68 -12.10 4.86 -473.32 -2.30 -14.40 16 10 C 0.15 2.98 2.82 44.17 0.12 3.10 16 11 H 0.09 1.60 7.13 -2.39 -0.02 1.58 16 12 C -0.17 -2.94 8.96 71.99 0.65 -2.30 16 13 C -0.14 -4.09 4.96 -19.83 -0.10 -4.18 16 14 C -0.04 -1.45 9.32 22.25 0.21 -1.25 16 15 C -0.21 -9.08 9.99 22.39 0.22 -8.86 16 16 C 0.11 5.54 6.65 22.58 0.15 5.69 16 17 O -0.24 -14.59 9.76 -22.71 -0.22 -14.81 16 18 C -0.41 -24.52 9.44 67.92 0.64 -23.88 16 19 H 0.10 5.36 5.30 -2.91 -0.02 5.34 16 20 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 21 N -0.92 -57.62 13.67 21.61 0.30 -57.33 16 22 Si 1.02 43.42 29.55 68.60 2.03 45.44 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 26 C -0.24 -10.69 9.13 22.39 0.20 -10.48 16 27 C -0.07 -2.38 9.66 22.25 0.21 -2.17 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.91 7.75 -2.39 -0.02 1.90 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.06 0.65 5.75 -2.38 -0.01 0.64 16 39 H 0.06 0.64 8.02 -2.39 -0.02 0.62 16 40 H 0.35 5.61 7.51 -89.70 -0.67 4.94 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.01 8.02 -2.39 -0.02 0.99 16 43 H 0.08 0.98 5.75 -2.39 -0.01 0.97 16 44 H 0.14 3.79 7.41 -2.91 -0.02 3.77 16 45 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 47 H 0.11 5.15 5.72 -2.91 -0.02 5.14 16 48 H 0.14 3.70 8.03 -2.91 -0.02 3.68 16 Total: -1.00 -70.92 397.68 4.14 -66.78 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.26 Total: 31.88 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 5.31 Total: -49.48 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -2.01 Total: -71.73 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.22 Total: -14.81 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.23 Total: -8.08 kcal Total: -70.92 4.14 -66.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164591953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.410 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds