Wall clock time and date at job start Tue Mar 31 2020 13:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47421 * 2 1 4 4 C 1.34774 * 120.00199 * 277.52761 * 3 2 1 5 5 O 1.21599 * 119.99916 * 10.70432 * 4 3 2 6 6 C 1.47588 * 120.00079 * 190.70248 * 4 3 2 7 7 C 1.40038 * 119.89668 * 322.81776 * 6 4 3 8 8 C 1.36312 * 120.10140 * 179.71767 * 7 6 4 9 9 C 1.40891 * 119.89384 * 0.57030 * 8 7 6 10 10 C 1.41088 * 120.10341 * 179.67733 * 9 8 7 11 11 H 1.08003 * 120.00369 * 199.69237 * 10 9 8 12 12 C 1.40235 * 119.99867 * 19.69225 * 10 9 8 13 13 N 1.30646 * 119.99892 * 31.45753 * 12 10 9 14 14 Si 1.86800 * 120.00144 * 211.45622 * 12 10 9 15 15 H 1.48501 * 109.47067 * 94.99517 * 14 12 10 16 16 H 1.48496 * 109.47227 * 214.99654 * 14 12 10 17 17 H 1.48503 * 109.47146 * 334.99541 * 14 12 10 18 18 C 1.40898 * 119.79690 * 359.69866 * 9 8 7 19 19 C 1.36302 * 119.89543 * 0.02562 * 18 9 8 20 20 C 1.39808 * 119.99529 * 97.52638 * 3 2 1 21 21 C 1.38925 * 120.07188 * 97.78377 * 20 3 2 22 22 C 1.38088 * 119.92333 * 180.02562 * 21 20 3 23 23 C 1.50703 * 119.96049 * 179.97438 * 22 21 20 24 24 C 1.38308 * 120.07406 * 0.02562 * 22 21 20 25 25 C 1.38268 * 120.14916 * 359.68583 * 24 22 21 26 26 C 1.38130 * 120.07039 * 0.59325 * 25 24 22 27 27 C 1.50702 * 120.03545 * 179.70175 * 26 25 24 28 28 H 1.09001 * 109.47303 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47329 * 299.99914 * 1 2 3 30 30 H 1.09011 * 109.46779 * 60.00041 * 1 2 3 31 31 H 1.09000 * 109.47144 * 240.00078 * 2 1 3 32 32 H 1.09004 * 109.47338 * 120.00283 * 2 1 3 33 33 H 1.07994 * 119.94607 * 359.97438 * 7 6 4 34 34 H 1.08000 * 120.04688 * 180.26872 * 8 7 6 35 35 H 0.97003 * 120.00017 * 179.97438 * 13 12 10 36 36 H 1.08004 * 120.05402 * 179.97438 * 18 9 8 37 37 H 1.08001 * 119.94851 * 180.02562 * 19 18 9 38 38 H 1.07993 * 120.03874 * 359.97438 * 21 20 3 39 39 H 1.08996 * 109.46880 * 90.00151 * 23 22 21 40 40 H 1.08996 * 109.46883 * 209.99719 * 23 22 21 41 41 H 1.08994 * 109.47113 * 329.99605 * 23 22 21 42 42 H 1.07998 * 119.92327 * 179.97438 * 24 22 21 43 43 H 1.07996 * 119.96930 * 180.32210 * 25 24 22 44 44 H 1.08996 * 109.47134 * 269.72503 * 27 26 25 45 45 H 1.09001 * 109.47091 * 149.72741 * 27 26 25 46 46 H 1.09001 * 109.46979 * 29.72671 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0989 2.0676 -1.1571 5 8 1.5897 1.6196 -2.1664 6 6 2.8050 3.3629 -1.1992 7 6 2.7133 4.2434 -0.1141 8 6 3.3684 5.4384 -0.1462 9 6 4.1288 5.7921 -1.2782 10 6 4.8031 7.0308 -1.3189 11 1 5.1123 7.4465 -2.2666 12 6 5.0719 7.7222 -0.1288 13 7 5.2890 7.0602 0.9764 14 14 5.1197 9.5895 -0.1238 15 1 3.7933 10.1175 0.2851 16 1 6.1547 10.0557 0.8336 17 1 5.4491 10.0799 -1.4863 18 6 4.2135 4.9053 -2.3699 19 6 3.5596 3.7102 -2.3265 20 6 2.4009 1.9873 1.2004 21 6 3.7417 2.0319 1.5614 22 6 4.1160 2.6308 2.7480 23 6 5.5702 2.6792 3.1406 24 6 3.1578 3.1854 3.5769 25 6 1.8231 3.1480 3.2178 26 6 1.4412 2.5454 2.0350 27 6 -0.0144 2.4991 1.6476 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1260 3.9735 0.7510 34 1 3.3006 6.1149 0.6929 35 1 5.4753 7.5384 1.7996 36 1 4.7949 5.1725 -3.2400 37 1 3.6242 3.0296 -3.1626 38 1 4.4902 1.5979 0.9152 39 1 6.0221 3.5905 2.7492 40 1 5.6535 2.6701 4.2274 41 1 6.0866 1.8119 2.7294 42 1 3.4533 3.6529 4.5046 43 1 1.0779 3.5866 3.8648 44 1 -0.4661 1.5882 2.0402 45 1 -0.1017 2.5089 0.5611 46 1 -0.5282 3.3669 2.0612 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270271663.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:18 Heat of formation + Delta-G solvation = 12.725304 kcal Electronic energy + Delta-G solvation = -28143.061765 eV Core-core repulsion = 24576.235245 eV Total energy + Delta-G solvation = -3566.826520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54250 -38.34606 -37.16279 -35.33012 -33.89776 -33.23009 -31.72567 -29.88459 -29.44181 -29.33805 -28.44235 -25.92675 -24.61152 -23.23266 -22.82857 -21.22163 -20.91416 -20.72050 -18.59890 -17.48787 -16.84327 -16.15741 -15.64762 -15.45823 -15.20918 -14.43123 -14.30246 -13.97188 -13.81874 -13.66945 -13.33942 -13.08226 -12.88587 -12.75240 -12.66881 -12.45935 -12.28821 -12.08545 -12.04237 -11.89224 -11.40468 -11.32741 -11.26140 -11.16268 -11.00938 -10.92045 -10.84811 -10.67142 -10.52489 -10.06786 -9.48414 -9.19624 -9.11520 -8.48970 -8.37563 -7.90609 -7.57726 -7.54106 -7.09604 -4.50292 1.56286 1.69280 2.37165 2.91267 2.97512 3.00596 3.13394 3.46898 3.71218 3.75634 3.96886 4.45169 5.06470 5.08076 5.11015 5.28886 5.39302 5.45596 5.46874 5.56079 5.62016 5.69208 5.77350 5.82425 5.85690 5.93936 5.98041 6.04126 6.14920 6.22476 6.27600 6.31728 6.35996 6.44362 6.49640 6.65832 6.81492 6.84848 6.87568 6.89962 6.99845 7.11968 7.20111 7.27804 7.51252 7.71993 7.86841 7.96740 8.11132 8.16464 8.45868 8.68986 8.84276 8.95577 9.82265 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.005015 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.671289 B = 5582.207614 C = 6677.694688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.122 3.878 3 N -0.583 5.583 4 C 0.583 3.417 5 O -0.559 6.559 6 C -0.291 4.291 7 C -0.061 4.061 8 C -0.189 4.189 9 C 0.129 3.871 10 C -0.450 4.450 11 H 0.085 0.915 12 C 0.086 3.914 13 N -0.750 5.750 14 Si 0.901 3.099 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.258 1.258 18 C -0.244 4.244 19 C -0.024 4.024 20 C 0.162 3.838 21 C -0.100 4.100 22 C -0.069 4.069 23 C -0.113 4.113 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.101 4.101 27 C -0.115 4.115 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.287 0.713 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.397 -7.017 8.619 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.001 3.999 3 N -0.313 5.313 4 C 0.380 3.620 5 O -0.439 6.439 6 C -0.295 4.295 7 C -0.080 4.080 8 C -0.208 4.208 9 C 0.126 3.874 10 C -0.476 4.476 11 H 0.103 0.897 12 C -0.138 4.138 13 N -0.371 5.371 14 Si 0.724 3.276 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.181 1.181 18 C -0.264 4.264 19 C -0.043 4.043 20 C 0.071 3.929 21 C -0.120 4.120 22 C -0.070 4.070 23 C -0.170 4.170 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.103 4.103 27 C -0.171 4.171 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.590 -7.281 8.291 11.603 hybrid contribution 0.156 0.935 0.122 0.956 sum -3.434 -6.346 8.413 11.084 Atomic orbital electron populations 1.22538 0.96397 1.01808 1.03534 1.21313 0.94456 0.82113 1.02064 1.45385 1.66955 1.13409 1.05561 1.18795 0.77602 0.84731 0.80919 1.90642 1.47664 1.71433 1.34125 1.18746 1.14750 0.96433 0.99563 1.21053 0.97275 0.94202 0.95446 1.20720 1.02335 0.97618 1.00142 1.17700 0.88159 0.90829 0.90703 1.19789 1.31249 1.02776 0.93809 0.89680 1.26070 0.91557 1.01369 0.94824 1.69838 1.26918 1.39182 1.01164 0.86405 0.79196 0.82192 0.79796 1.18881 1.20044 1.18105 1.20565 1.08765 0.95935 1.01098 1.20210 0.94119 0.95588 0.94403 1.17159 0.91928 0.96955 0.86819 1.21152 0.95050 0.99867 0.95897 1.19702 0.95920 0.97236 0.94122 1.20779 0.92156 1.03021 1.01002 1.20939 0.92620 1.00087 0.99841 1.20797 0.96094 1.00024 0.96049 1.19971 0.95817 0.99232 0.95282 1.20996 0.91988 1.01529 1.02575 0.92427 0.91231 0.91669 0.90747 0.91102 0.87486 0.87448 0.90234 0.88698 0.88972 0.86113 0.90179 0.92036 0.92001 0.86291 0.86156 0.91065 0.91087 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 9.09 37.15 0.34 -2.10 16 2 C 0.12 1.81 6.00 -4.04 -0.02 1.78 16 3 N -0.58 -10.45 1.62 -114.60 -0.19 -10.63 16 4 C 0.58 12.75 7.07 -12.45 -0.09 12.66 16 5 O -0.56 -13.34 16.14 5.28 0.09 -13.26 16 6 C -0.29 -6.86 5.42 -104.73 -0.57 -7.43 16 7 C -0.06 -1.43 7.63 -39.60 -0.30 -1.73 16 8 C -0.19 -4.75 8.73 -39.27 -0.34 -5.09 16 9 C 0.13 3.34 5.60 -106.81 -0.60 2.75 16 10 C -0.45 -11.32 8.97 -37.75 -0.34 -11.66 16 11 H 0.09 2.08 8.01 -52.48 -0.42 1.65 16 12 C 0.09 2.01 4.83 -17.31 -0.08 1.93 16 13 N -0.75 -17.70 11.54 55.56 0.64 -17.06 16 14 Si 0.90 17.28 29.66 -169.99 -5.04 12.24 16 15 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 16 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 17 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 18 C -0.24 -6.05 9.73 -39.27 -0.38 -6.43 16 19 C -0.02 -0.58 9.54 -39.60 -0.38 -0.96 16 20 C 0.16 2.77 2.71 -83.73 -0.23 2.54 16 21 C -0.10 -1.71 8.37 -39.38 -0.33 -2.04 16 22 C -0.07 -1.07 5.88 -104.65 -0.62 -1.69 16 23 C -0.11 -1.52 10.01 36.01 0.36 -1.16 16 24 C -0.12 -1.68 9.70 -39.54 -0.38 -2.06 16 25 C -0.11 -1.58 9.59 -39.61 -0.38 -1.96 16 26 C -0.10 -1.57 3.84 -104.42 -0.40 -1.97 16 27 C -0.11 -1.57 8.15 36.01 0.29 -1.28 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.86 4.11 -51.93 -0.21 0.64 16 30 H 0.06 1.02 7.61 -51.92 -0.40 0.62 16 31 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 32 H 0.07 0.89 7.99 -51.93 -0.41 0.48 16 33 H 0.11 2.31 3.79 -52.49 -0.20 2.11 16 34 H 0.11 2.75 6.32 -52.49 -0.33 2.42 16 35 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 36 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 37 H 0.09 2.12 8.02 -52.49 -0.42 1.70 16 38 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 41 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 43 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.07 0.83 6.22 -51.93 -0.32 0.51 16 45 H 0.07 1.14 6.43 -51.93 -0.33 0.80 16 46 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -28.36 368.52 -9.79 -38.14 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.39 Total: 10.92 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -4.45 Total: -25.91 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.46 Total: -27.69 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.04 Total: 12.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.36 -9.79 -38.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270271663.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.869 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds