Wall clock time and date at job start Tue Mar 31 2020 13:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46972 * 2 1 4 4 C 1.53005 * 109.46827 * 240.00374 * 2 1 3 5 5 N 1.46499 * 109.47055 * 64.99915 * 4 2 1 6 6 C 1.46497 * 120.00002 * 269.99892 * 5 4 2 7 7 C 1.34776 * 120.00248 * 89.99970 * 5 4 2 8 8 O 1.21594 * 119.99505 * 355.45288 * 7 5 4 9 9 C 1.47637 * 120.00205 * 175.44977 * 7 5 4 10 10 C 1.40020 * 119.89299 * 221.81031 * 9 7 5 11 11 C 1.36316 * 120.10252 * 179.76242 * 10 9 7 12 12 C 1.40897 * 119.89386 * 0.51004 * 11 10 9 13 13 C 1.41101 * 120.10142 * 179.72039 * 12 11 10 14 14 H 1.08001 * 119.99941 * 209.25522 * 13 12 11 15 15 C 1.40223 * 120.00393 * 29.25837 * 13 12 11 16 16 N 1.30643 * 120.00190 * 10.50848 * 15 13 12 17 17 Si 1.86800 * 120.00058 * 190.51153 * 15 13 12 18 18 H 1.48503 * 109.47137 * 59.99745 * 17 15 13 19 19 H 1.48502 * 109.47307 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46980 * 299.99640 * 17 15 13 21 21 C 1.40888 * 119.78922 * 359.74405 * 12 11 10 22 22 C 1.36315 * 119.89310 * 359.97438 * 21 12 11 23 23 C 1.50703 * 109.47438 * 120.00464 * 2 1 3 24 24 C 1.38232 * 120.00029 * 59.72163 * 23 2 1 25 25 C 1.38230 * 119.99881 * 179.78767 * 24 23 2 26 26 C 1.38235 * 120.00258 * 0.44497 * 25 24 23 27 27 C 1.38238 * 119.99767 * 359.81235 * 26 25 24 28 28 C 1.38232 * 119.99683 * 239.99818 * 23 2 1 29 29 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46865 * 299.99470 * 1 2 3 31 31 H 1.08994 * 109.47482 * 59.99757 * 1 2 3 32 32 H 1.08996 * 109.47002 * 185.00127 * 4 2 1 33 33 H 1.08992 * 109.47221 * 304.99811 * 4 2 1 34 34 H 1.09001 * 109.47387 * 95.25351 * 6 5 4 35 35 H 1.09001 * 109.47129 * 215.25749 * 6 5 4 36 36 H 1.09004 * 109.47233 * 335.25348 * 6 5 4 37 37 H 1.07997 * 119.94645 * 0.02562 * 10 9 7 38 38 H 1.08005 * 120.05486 * 180.23364 * 11 10 9 39 39 H 0.96996 * 120.00281 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.05268 * 179.97438 * 21 12 11 41 41 H 1.08008 * 119.94509 * 179.97438 * 22 21 12 42 42 H 1.08009 * 119.99827 * 0.02562 * 24 23 2 43 43 H 1.08010 * 119.99914 * 180.27364 * 25 24 23 44 44 H 1.08000 * 120.00079 * 179.83133 * 26 25 24 45 45 H 1.07991 * 120.00215 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.00376 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6523 0.0355 -2.4424 6 6 0.3744 -0.2422 -3.1027 7 6 2.4713 0.9870 -2.9325 8 8 3.4925 1.2751 -2.3385 9 6 2.1287 1.6796 -4.1905 10 6 3.1256 1.9368 -5.1394 11 6 2.8131 2.5717 -6.3046 12 6 1.4865 2.9788 -6.5485 13 6 1.1593 3.6415 -7.7504 14 1 0.3427 4.3480 -7.7725 15 6 1.8941 3.3828 -8.9163 16 7 2.7406 2.3881 -8.9478 17 14 1.6630 4.4604 -10.4245 18 1 2.0082 5.8648 -10.0870 19 1 2.5495 3.9818 -11.5155 20 1 0.2480 4.3917 -10.8698 21 6 0.4879 2.7224 -5.5882 22 6 0.8089 2.0819 -4.4286 23 6 2.0324 -0.7105 1.2304 24 6 1.6938 -2.0323 1.4520 25 6 2.1582 -2.6852 2.5783 26 6 2.9538 -2.0138 3.4878 27 6 3.2881 -0.6904 3.2689 28 6 2.8272 -0.0387 2.1403 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.1262 -0.7995 -1.2057 33 1 1.6053 -1.7197 -1.2953 34 1 -0.3814 0.4539 -2.7389 35 1 0.4889 -0.1236 -4.1802 36 1 0.0649 -1.2634 -2.8805 37 1 4.1430 1.6279 -4.9498 38 1 3.5821 2.7663 -7.0376 39 1 3.2486 2.2089 -9.7543 40 1 -0.5303 3.0330 -5.7706 41 1 0.0441 1.8853 -3.6917 42 1 1.0694 -2.5559 0.7431 43 1 1.8973 -3.7193 2.7492 44 1 3.3144 -2.5232 4.3692 45 1 3.9092 -0.1657 3.9796 46 1 3.0884 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270313668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:43 Heat of formation + Delta-G solvation = 2.777583 kcal Electronic energy + Delta-G solvation = -26157.909391 eV Core-core repulsion = 22590.651506 eV Total energy + Delta-G solvation = -3567.257885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.95383 -39.12499 -37.23595 -35.87630 -34.06190 -33.49980 -31.01441 -30.23796 -29.72860 -29.24743 -27.60002 -26.28762 -24.93404 -23.44793 -22.59219 -21.47356 -21.03047 -20.12369 -18.71425 -17.52271 -17.05851 -16.47328 -15.94454 -15.48494 -15.34400 -15.16196 -14.77606 -14.22055 -13.91291 -13.62420 -13.50694 -13.31138 -13.17729 -13.00976 -12.75743 -12.49919 -12.35633 -12.32113 -11.95903 -11.84367 -11.70388 -11.41684 -11.37759 -11.22903 -11.17907 -10.94812 -10.83766 -10.65893 -10.53333 -10.00359 -9.50809 -9.36580 -9.02650 -8.99334 -8.83900 -8.21219 -7.67146 -7.45346 -6.90850 -4.57048 1.25688 1.30037 2.33853 2.96440 2.97973 3.00634 3.02793 3.48804 3.65611 3.74969 3.80988 4.53133 4.68005 4.70791 4.88277 5.00802 5.01776 5.10475 5.32130 5.38729 5.43267 5.45303 5.54167 5.54527 5.59606 5.78913 5.81948 5.90709 5.94380 5.98722 6.09204 6.14826 6.17885 6.24149 6.26387 6.37243 6.40161 6.61105 6.81259 6.87962 6.90257 6.97958 7.05995 7.14868 7.47490 7.60873 7.78549 7.89395 8.03239 8.13040 8.46923 8.68915 8.78461 8.94230 10.01173 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.036455 B = 0.002278 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.876248 B =12290.385376 C =12550.683043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 H 0.084 0.916 4 C 0.130 3.870 5 N -0.621 5.621 6 C 0.081 3.919 7 C 0.576 3.424 8 O -0.562 6.562 9 C -0.270 4.270 10 C -0.047 4.047 11 C -0.170 4.170 12 C 0.126 3.874 13 C -0.450 4.450 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.784 5.784 17 Si 0.915 3.085 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.231 4.231 22 C -0.059 4.059 23 C -0.066 4.066 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.113 4.113 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.285 0.715 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -8.304 14.972 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 H 0.102 0.898 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.062 4.062 7 C 0.370 3.630 8 O -0.442 6.442 9 C -0.275 4.275 10 C -0.066 4.066 11 C -0.190 4.190 12 C 0.123 3.877 13 C -0.479 4.479 14 H 0.100 0.900 15 C -0.147 4.147 16 N -0.409 5.409 17 Si 0.739 3.261 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.250 4.250 22 C -0.078 4.078 23 C -0.067 4.067 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.147 4.147 27 C -0.137 4.137 28 C -0.131 4.131 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.228 -8.290 15.094 17.520 hybrid contribution -0.148 0.317 -0.680 0.764 sum -3.376 -7.973 14.414 16.814 Atomic orbital electron populations 1.21922 0.94180 1.01763 1.02191 1.20607 0.96236 1.00319 0.91878 0.89803 1.21381 1.01089 0.93587 0.83300 1.47772 1.20729 1.38501 1.28405 1.22059 0.84745 0.99802 0.99552 1.18797 0.81722 0.77883 0.84597 1.90658 1.27144 1.65337 1.61024 1.18874 0.95370 1.16248 0.96968 1.20398 0.96314 0.96635 0.93247 1.21045 0.97020 1.04421 0.96490 1.17774 0.90875 0.87583 0.91438 1.19721 1.13880 1.21177 0.93114 0.90049 1.26040 0.93268 0.94377 1.01033 1.69700 1.18573 1.22928 1.29661 0.86248 0.79422 0.80878 0.79550 1.18652 1.20156 1.18819 1.20735 0.98048 1.09069 0.97196 1.20569 0.93788 0.97280 0.96155 1.19858 0.96930 0.94158 0.95738 1.21004 1.00398 0.94344 0.97707 1.21112 0.98282 0.99714 0.94758 1.21111 0.99168 0.94930 0.99522 1.21141 0.99987 0.94975 0.97608 1.21158 0.97576 1.00182 0.94199 0.92700 0.92850 0.91606 0.90224 0.91103 0.92921 0.89696 0.92251 0.88835 0.85987 0.90387 0.88513 0.88476 0.86161 0.86289 0.86410 0.86238 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.57 37.16 0.32 -1.24 16 2 C -0.07 -0.90 2.77 -91.77 -0.25 -1.15 16 3 H 0.08 1.27 7.88 -51.93 -0.41 0.86 16 4 C 0.13 1.81 4.63 -4.04 -0.02 1.79 16 5 N -0.62 -10.14 2.70 -182.77 -0.49 -10.64 16 6 C 0.08 1.11 7.82 59.85 0.47 1.58 16 7 C 0.58 12.06 7.30 -12.42 -0.09 11.97 16 8 O -0.56 -13.31 16.57 5.28 0.09 -13.23 16 9 C -0.27 -6.07 5.16 -104.73 -0.54 -6.61 16 10 C -0.05 -1.13 9.58 -39.61 -0.38 -1.51 16 11 C -0.17 -4.34 8.59 -39.27 -0.34 -4.67 16 12 C 0.13 3.20 5.55 -106.80 -0.59 2.61 16 13 C -0.45 -11.25 9.05 -37.75 -0.34 -11.59 16 14 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 15 C 0.07 1.72 5.25 -17.31 -0.09 1.63 16 16 N -0.78 -19.30 10.84 55.56 0.60 -18.69 16 17 Si 0.92 17.69 29.57 -169.99 -5.03 12.66 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 21 C -0.23 -5.28 9.73 -39.27 -0.38 -5.66 16 22 C -0.06 -1.24 7.55 -39.61 -0.30 -1.54 16 23 C -0.07 -0.78 4.78 -104.62 -0.50 -1.28 16 24 C -0.12 -1.20 8.76 -39.59 -0.35 -1.55 16 25 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 26 C -0.13 -1.22 10.05 -39.58 -0.40 -1.61 16 27 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 28 C -0.11 -1.32 9.67 -39.58 -0.38 -1.71 16 29 H 0.05 0.51 7.37 -51.93 -0.38 0.13 16 30 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.07 0.75 5.54 -51.93 -0.29 0.46 16 32 H 0.08 1.28 7.49 -51.93 -0.39 0.89 16 33 H 0.07 0.81 7.30 -51.93 -0.38 0.43 16 34 H 0.05 0.66 5.36 -51.93 -0.28 0.38 16 35 H 0.08 1.34 6.02 -51.93 -0.31 1.02 16 36 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 37 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.12 3.20 6.23 -52.48 -0.33 2.87 16 39 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 40 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 41 H 0.10 1.73 5.55 -52.48 -0.29 1.44 16 42 H 0.12 1.06 7.16 -52.48 -0.38 0.68 16 43 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.12 1.39 7.95 -52.49 -0.42 0.97 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -28.66 372.20 -10.53 -39.18 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.34 Total: 8.80 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -4.96 Total: -23.69 kcal Atomic # 7 Polarization: -29.44 SS G_CDS: 0.11 Total: -29.33 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.23 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.66 -10.53 -39.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270313668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.958 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds