Wall clock time and date at job start Tue Mar 31 2020 13:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46972 * 2 1 4 4 C 1.53005 * 109.46827 * 240.00374 * 2 1 3 5 5 N 1.46499 * 109.47055 * 64.99915 * 4 2 1 6 6 C 1.46497 * 120.00002 * 269.99892 * 5 4 2 7 7 C 1.34776 * 120.00248 * 89.99970 * 5 4 2 8 8 O 1.21594 * 119.99505 * 355.45288 * 7 5 4 9 9 C 1.47637 * 120.00205 * 175.44977 * 7 5 4 10 10 C 1.40020 * 119.89299 * 221.81031 * 9 7 5 11 11 C 1.36316 * 120.10252 * 179.76242 * 10 9 7 12 12 C 1.40897 * 119.89386 * 0.51004 * 11 10 9 13 13 C 1.41101 * 120.10142 * 179.72039 * 12 11 10 14 14 H 1.08001 * 119.99941 * 209.25522 * 13 12 11 15 15 C 1.40223 * 120.00393 * 29.25837 * 13 12 11 16 16 N 1.30643 * 120.00190 * 10.50848 * 15 13 12 17 17 Si 1.86800 * 120.00058 * 190.51153 * 15 13 12 18 18 H 1.48503 * 109.47137 * 59.99745 * 17 15 13 19 19 H 1.48502 * 109.47307 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46980 * 299.99640 * 17 15 13 21 21 C 1.40888 * 119.78922 * 359.74405 * 12 11 10 22 22 C 1.36315 * 119.89310 * 359.97438 * 21 12 11 23 23 C 1.50703 * 109.47438 * 120.00464 * 2 1 3 24 24 C 1.38232 * 120.00029 * 59.72163 * 23 2 1 25 25 C 1.38230 * 119.99881 * 179.78767 * 24 23 2 26 26 C 1.38235 * 120.00258 * 0.44497 * 25 24 23 27 27 C 1.38238 * 119.99767 * 359.81235 * 26 25 24 28 28 C 1.38232 * 119.99683 * 239.99818 * 23 2 1 29 29 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46865 * 299.99470 * 1 2 3 31 31 H 1.08994 * 109.47482 * 59.99757 * 1 2 3 32 32 H 1.08996 * 109.47002 * 185.00127 * 4 2 1 33 33 H 1.08992 * 109.47221 * 304.99811 * 4 2 1 34 34 H 1.09001 * 109.47387 * 95.25351 * 6 5 4 35 35 H 1.09001 * 109.47129 * 215.25749 * 6 5 4 36 36 H 1.09004 * 109.47233 * 335.25348 * 6 5 4 37 37 H 1.07997 * 119.94645 * 0.02562 * 10 9 7 38 38 H 1.08005 * 120.05486 * 180.23364 * 11 10 9 39 39 H 0.96996 * 120.00281 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.05268 * 179.97438 * 21 12 11 41 41 H 1.08008 * 119.94509 * 179.97438 * 22 21 12 42 42 H 1.08009 * 119.99827 * 0.02562 * 24 23 2 43 43 H 1.08010 * 119.99914 * 180.27364 * 25 24 23 44 44 H 1.08000 * 120.00079 * 179.83133 * 26 25 24 45 45 H 1.07991 * 120.00215 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.00376 * 359.97438 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6523 0.0355 -2.4424 6 6 0.3744 -0.2422 -3.1027 7 6 2.4713 0.9870 -2.9325 8 8 3.4925 1.2751 -2.3385 9 6 2.1287 1.6796 -4.1905 10 6 3.1256 1.9368 -5.1394 11 6 2.8131 2.5717 -6.3046 12 6 1.4865 2.9788 -6.5485 13 6 1.1593 3.6415 -7.7504 14 1 0.3427 4.3480 -7.7725 15 6 1.8941 3.3828 -8.9163 16 7 2.7406 2.3881 -8.9478 17 14 1.6630 4.4604 -10.4245 18 1 2.0082 5.8648 -10.0870 19 1 2.5495 3.9818 -11.5155 20 1 0.2480 4.3917 -10.8698 21 6 0.4879 2.7224 -5.5882 22 6 0.8089 2.0819 -4.4286 23 6 2.0324 -0.7105 1.2304 24 6 1.6938 -2.0323 1.4520 25 6 2.1582 -2.6852 2.5783 26 6 2.9538 -2.0138 3.4878 27 6 3.2881 -0.6904 3.2689 28 6 2.8272 -0.0387 2.1403 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 3.1262 -0.7995 -1.2057 33 1 1.6053 -1.7197 -1.2953 34 1 -0.3814 0.4539 -2.7389 35 1 0.4889 -0.1236 -4.1802 36 1 0.0649 -1.2634 -2.8805 37 1 4.1430 1.6279 -4.9498 38 1 3.5821 2.7663 -7.0376 39 1 3.2486 2.2089 -9.7543 40 1 -0.5303 3.0330 -5.7706 41 1 0.0441 1.8853 -3.6917 42 1 1.0694 -2.5559 0.7431 43 1 1.8973 -3.7193 2.7492 44 1 3.3144 -2.5232 4.3692 45 1 3.9092 -0.1657 3.9796 46 1 3.0884 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270313668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:42 Heat of formation + Delta-G solvation = -9.531321 kcal Electronic energy + Delta-G solvation = -26158.443145 eV Core-core repulsion = 22590.651506 eV Total energy + Delta-G solvation = -3567.791640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26009 -40.22949 -38.95576 -37.20411 -35.72113 -34.80072 -31.97470 -31.77440 -31.47367 -30.21942 -28.77373 -27.92825 -26.33014 -24.40996 -23.48795 -23.09562 -22.73409 -21.21070 -20.19720 -19.34951 -18.04558 -17.90708 -17.19456 -17.14579 -16.57307 -16.25080 -15.84603 -15.69341 -15.20018 -15.14934 -14.64206 -14.50170 -14.32857 -14.11807 -14.11040 -13.93149 -13.67011 -13.63707 -13.35016 -13.28291 -13.00218 -12.80240 -12.73083 -12.59404 -12.31158 -12.26779 -12.13230 -11.75921 -11.70615 -11.56399 -11.34127 -11.12726 -10.67691 -9.81209 -9.77872 -9.55809 -9.42566 -9.28239 -8.69123 -6.46115 0.45778 0.52418 0.56099 1.14508 1.39332 1.45579 1.51823 1.97966 2.16604 2.20505 2.74576 2.91389 3.65961 3.72284 3.82714 3.94396 4.15421 4.18039 4.20601 4.28386 4.32762 4.38177 4.38371 4.46758 4.60907 4.64786 4.67465 4.77834 4.85798 4.93140 4.98664 5.03765 5.05624 5.13357 5.14851 5.21228 5.21288 5.29004 5.35133 5.58558 5.62217 5.64813 5.70369 5.76977 5.79156 5.99894 6.03331 6.15293 6.23776 6.48822 6.59566 6.82253 6.92011 7.33237 8.25319 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.036455 B = 0.002278 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.876248 B =12290.385376 C =12550.683043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 H 0.048 0.952 4 C 0.130 3.870 5 N -0.609 5.609 6 C 0.074 3.926 7 C 0.571 3.429 8 O -0.600 6.600 9 C -0.275 4.275 10 C -0.060 4.060 11 C -0.191 4.191 12 C 0.098 3.902 13 C -0.480 4.480 14 H 0.088 0.912 15 C 0.031 3.969 16 N -0.817 5.817 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.270 1.270 20 H -0.254 1.254 21 C -0.239 4.239 22 C -0.044 4.044 23 C -0.082 4.082 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.138 4.138 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.291 0.709 40 H 0.116 0.884 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.134 0.866 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 -10.053 16.044 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.081 4.081 3 H 0.066 0.934 4 C 0.007 3.993 5 N -0.340 5.340 6 C -0.068 4.068 7 C 0.364 3.636 8 O -0.483 6.483 9 C -0.279 4.279 10 C -0.080 4.080 11 C -0.210 4.210 12 C 0.095 3.905 13 C -0.509 4.509 14 H 0.106 0.894 15 C -0.185 4.185 16 N -0.442 5.442 17 Si 0.809 3.191 18 H -0.185 1.185 19 H -0.194 1.194 20 H -0.178 1.178 21 C -0.258 4.258 22 C -0.063 4.063 23 C -0.083 4.083 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.157 4.157 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.161 0.839 45 H 0.152 0.848 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.603 -10.073 16.190 19.874 hybrid contribution 0.599 0.750 -0.855 1.285 sum -5.004 -9.323 15.335 18.631 Atomic orbital electron populations 1.21891 0.92269 1.03257 1.02072 1.20427 0.97683 0.98226 0.91800 0.93352 1.21559 0.99890 0.95063 0.82769 1.47740 1.20814 1.36733 1.28687 1.22283 0.83494 1.02892 0.98092 1.18631 0.81957 0.78798 0.84173 1.90637 1.28909 1.66808 1.61981 1.19136 0.95667 1.15951 0.97140 1.20475 0.96726 0.97067 0.93713 1.20946 0.97180 1.06143 0.96765 1.18131 0.91265 0.88361 0.92702 1.20017 1.15023 1.22054 0.93782 0.89413 1.26936 0.92501 0.95269 1.03831 1.69771 1.19299 1.24270 1.30837 0.85146 0.79765 0.78637 0.75593 1.18484 1.19394 1.17816 1.20992 0.98435 1.09072 0.97311 1.20850 0.93885 0.95364 0.96158 1.19840 0.97839 0.95124 0.95458 1.21230 1.00504 0.93549 0.98518 1.21488 0.97450 1.00941 0.94090 1.21474 0.98599 0.94515 1.00348 1.21375 1.00076 0.95740 0.97331 1.21253 0.98786 1.00118 0.95509 0.90303 0.92702 0.92011 0.92960 0.87413 0.91006 0.91756 0.88223 0.89521 0.87829 0.89764 0.86637 0.84701 0.84199 0.83589 0.83941 0.84821 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.57 71.98 0.62 -2.00 16 2 C -0.06 -1.51 2.77 -11.54 -0.03 -1.55 16 3 H 0.05 1.52 7.88 -2.39 -0.02 1.50 16 4 C 0.13 3.44 4.63 86.38 0.40 3.84 16 5 N -0.61 -19.09 2.70 -850.42 -2.29 -21.39 16 6 C 0.07 1.79 7.82 127.77 1.00 2.79 16 7 C 0.57 24.22 7.30 86.73 0.63 24.86 16 8 O -0.60 -29.58 16.57 -4.01 -0.07 -29.65 16 9 C -0.27 -12.52 5.16 -19.93 -0.10 -12.62 16 10 C -0.06 -3.07 9.58 22.25 0.21 -2.85 16 11 C -0.19 -10.22 8.59 22.47 0.19 -10.02 16 12 C 0.10 5.12 5.55 -21.28 -0.12 5.01 16 13 C -0.48 -24.47 9.05 23.46 0.21 -24.26 16 14 H 0.09 4.20 7.87 -2.91 -0.02 4.17 16 15 C 0.03 1.50 5.25 85.35 0.45 1.95 16 16 N -0.82 -41.43 10.84 21.87 0.24 -41.19 16 17 Si 0.99 36.25 29.57 68.60 2.03 38.28 16 18 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 19 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 20 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 21 C -0.24 -10.86 9.73 22.47 0.22 -10.64 16 22 C -0.04 -1.81 7.55 22.25 0.17 -1.65 16 23 C -0.08 -1.86 4.78 -19.87 -0.09 -1.95 16 24 C -0.12 -2.15 8.76 22.27 0.20 -1.95 16 25 C -0.12 -1.91 10.05 22.27 0.22 -1.68 16 26 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 27 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 28 C -0.14 -3.28 9.67 22.27 0.22 -3.07 16 29 H 0.08 1.13 7.37 -2.39 -0.02 1.11 16 30 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 1.21 5.54 -2.39 -0.01 1.20 16 32 H 0.05 1.69 7.49 -2.39 -0.02 1.68 16 33 H 0.11 2.07 7.30 -2.39 -0.02 2.05 16 34 H 0.07 1.51 5.36 -2.39 -0.01 1.49 16 35 H 0.06 1.88 6.02 -2.39 -0.01 1.86 16 36 H 0.10 1.66 7.83 -2.38 -0.02 1.64 16 37 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 38 H 0.10 5.81 6.23 -2.91 -0.02 5.79 16 39 H 0.29 13.39 8.29 -92.71 -0.77 12.62 16 40 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.14 4.44 5.55 -2.91 -0.02 4.43 16 42 H 0.14 1.87 7.16 -2.91 -0.02 1.84 16 43 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.13 2.07 8.06 -2.92 -0.02 2.05 16 46 H 0.11 2.71 7.95 -2.91 -0.02 2.69 16 Total: -1.00 -66.09 372.20 5.73 -60.37 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.98 Total: 33.56 kcal Atomic # 6 Polarization: -44.81 SS G_CDS: 4.84 Total: -39.97 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -2.06 Total: -62.58 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.07 Total: -29.65 kcal Atomic # 14 Polarization: 36.25 SS G_CDS: 2.03 Total: 38.28 kcal Total: -66.09 5.73 -60.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270313668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.836 kcal (2) G-P(sol) polarization free energy of solvation -66.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds