Wall clock time and date at job start Tue Mar 31 2020 14:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00149 * 2 1 4 4 C 1.52998 * 109.47091 * 270.00188 * 3 2 1 5 5 C 1.53008 * 109.47077 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46672 * 179.97438 * 5 4 3 7 7 C 1.38236 * 119.99775 * 269.72283 * 6 5 4 8 8 C 1.38232 * 119.99782 * 179.77148 * 7 6 5 9 9 C 1.38235 * 119.99994 * 0.50704 * 8 7 6 10 10 C 1.38234 * 120.00093 * 359.74647 * 9 8 7 11 11 C 1.38233 * 119.99905 * 359.97438 * 10 9 8 12 12 C 1.34772 * 120.00284 * 179.97438 * 2 1 3 13 13 O 1.21549 * 120.00536 * 174.39283 * 12 2 1 14 14 C 1.47894 * 119.99724 * 354.39411 * 12 2 1 15 15 C 1.39914 * 120.02692 * 147.12131 * 14 12 2 16 16 C 1.38331 * 120.36307 * 180.02562 * 15 14 12 17 17 C 1.37748 * 120.40683 * 359.97438 * 16 15 14 18 18 C 1.40754 * 120.04109 * 0.02562 * 17 16 15 19 19 C 1.41437 * 120.17794 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00299 * 150.21626 * 19 18 17 21 21 C 1.39939 * 120.00045 * 330.21653 * 19 18 17 22 22 N 1.30828 * 120.00153 * 344.52901 * 21 19 18 23 23 Si 1.86796 * 120.00118 * 164.51862 * 21 19 18 24 24 H 1.48502 * 109.46771 * 90.00397 * 23 21 19 25 25 H 1.48498 * 109.47480 * 210.00115 * 23 21 19 26 26 H 1.48497 * 109.47176 * 330.00560 * 23 21 19 27 27 C 1.38995 * 120.02099 * 327.13717 * 14 12 2 28 28 H 1.08997 * 109.47461 * 269.32001 * 1 2 3 29 29 H 1.09003 * 109.47222 * 29.32299 * 1 2 3 30 30 H 1.08997 * 109.47380 * 149.32020 * 1 2 3 31 31 H 1.08999 * 109.46965 * 29.99722 * 3 2 1 32 32 H 1.08996 * 109.47628 * 150.00079 * 3 2 1 33 33 H 1.08999 * 109.46836 * 299.99613 * 4 3 2 34 34 H 1.08999 * 109.47544 * 59.99961 * 4 3 2 35 35 H 1.08999 * 109.47022 * 299.99561 * 5 4 3 36 36 H 1.08991 * 109.47126 * 59.99871 * 5 4 3 37 37 H 1.08000 * 119.99999 * 359.97438 * 7 6 5 38 38 H 1.08006 * 119.99932 * 180.22617 * 8 7 6 39 39 H 1.08004 * 120.00148 * 179.72516 * 9 8 7 40 40 H 1.07994 * 120.00285 * 179.97438 * 10 9 8 41 41 H 1.07996 * 120.00236 * 179.97438 * 11 10 9 42 42 H 1.08001 * 119.81865 * 359.97438 * 15 14 12 43 43 H 1.07992 * 119.79939 * 180.02562 * 16 15 14 44 44 H 1.08005 * 119.98155 * 179.97438 * 17 16 15 45 45 H 0.97001 * 120.00151 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.20822 * 359.70835 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2170 3.0358 -1.4425 6 6 3.4686 3.4704 -2.8634 7 6 4.6237 3.0763 -3.5124 8 6 4.8523 3.4711 -4.8173 9 6 3.9308 4.2686 -5.4696 10 6 2.7781 4.6671 -4.8189 11 6 2.5468 4.2675 -3.5159 12 6 2.1389 -1.1671 0.0005 13 8 3.3500 -1.1697 -0.1023 14 6 1.4047 -2.4448 0.1262 15 6 1.8804 -3.5920 -0.5182 16 6 1.1990 -4.7905 -0.4058 17 6 0.0448 -4.8688 0.3420 18 6 -0.4491 -3.7253 0.9975 19 6 -1.6336 -3.8026 1.7665 20 1 -1.7690 -3.1505 2.6167 21 6 -2.6302 -4.7240 1.4257 22 7 -2.6187 -5.2946 0.2485 23 14 -3.9769 -5.1394 2.6518 24 1 -5.1200 -4.2099 2.4652 25 1 -4.4331 -6.5353 2.4320 26 1 -3.4483 -5.0029 4.0327 27 6 0.2414 -2.5067 0.8844 28 1 -0.3634 -0.0122 1.0275 29 1 -0.3634 0.8960 -0.5033 30 1 -0.3634 -0.8838 -0.5243 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0415 0.9507 -1.9563 34 1 1.5001 1.8408 -1.9563 35 1 2.6275 3.7952 -0.9288 36 1 4.1693 2.9059 -0.9286 37 1 5.3461 2.4573 -3.0011 38 1 5.7531 3.1601 -5.3256 39 1 4.1115 4.5807 -6.4877 40 1 2.0584 5.2905 -5.3283 41 1 1.6465 4.5791 -3.0073 42 1 2.7842 -3.5413 -1.1073 43 1 1.5746 -5.6705 -0.9067 44 1 -0.4820 -5.8081 0.4248 45 1 -3.3093 -5.9335 0.0124 46 1 -0.1271 -1.6248 1.3871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298787708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:31 Heat of formation + Delta-G solvation = -0.322139 kcal Electronic energy + Delta-G solvation = -25680.008004 eV Core-core repulsion = 22112.615704 eV Total energy + Delta-G solvation = -3567.392299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.71311 -39.33345 -37.16706 -35.76404 -34.14866 -33.62886 -31.04179 -30.97330 -29.94146 -29.34756 -26.84102 -25.68295 -25.28624 -22.92749 -22.72788 -21.45618 -20.88668 -20.78682 -19.09273 -17.31904 -16.95127 -16.12106 -15.82981 -15.50699 -15.39365 -15.06069 -14.96871 -14.78039 -14.15474 -13.71109 -13.55423 -13.51355 -13.15259 -13.13830 -12.78375 -12.62510 -12.37531 -12.07443 -11.99125 -11.77802 -11.68128 -11.61531 -11.21129 -11.17513 -11.06114 -10.98637 -10.72196 -10.60608 -10.53277 -10.22499 -9.54649 -9.25596 -9.07951 -9.07107 -8.86347 -8.27188 -7.61206 -7.49478 -6.81910 -4.46069 1.19963 1.24379 2.24873 2.72439 3.04001 3.06458 3.12041 3.38950 3.65231 3.71673 3.89758 4.57504 4.60699 4.66352 4.83829 4.93845 4.96199 5.18824 5.21967 5.33208 5.38508 5.43827 5.50121 5.53567 5.58620 5.65358 5.72391 5.87094 5.89799 5.91776 6.11846 6.16524 6.23094 6.30354 6.32220 6.35273 6.39124 6.51528 6.75514 6.84472 6.87720 6.89318 7.01557 7.15391 7.34512 7.61515 7.76984 7.89236 7.94771 8.08030 8.48513 8.75838 8.78188 8.82567 10.15249 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.002305 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.786020 B =12142.724927 C =12535.376275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.618 5.618 3 C 0.119 3.881 4 C -0.128 4.128 5 C -0.079 4.079 6 C -0.076 4.076 7 C -0.116 4.116 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.119 4.119 12 C 0.567 3.433 13 O -0.554 6.554 14 C -0.117 4.117 15 C -0.175 4.175 16 C -0.116 4.116 17 C -0.133 4.133 18 C 0.102 3.898 19 C -0.468 4.468 20 H 0.078 0.922 21 C 0.077 3.923 22 N -0.800 5.800 23 Si 0.907 3.093 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.191 4.191 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.281 0.719 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.482 15.751 -5.821 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.351 5.351 3 C -0.004 4.004 4 C -0.167 4.167 5 C -0.117 4.117 6 C -0.076 4.076 7 C -0.134 4.134 8 C -0.137 4.137 9 C -0.147 4.147 10 C -0.138 4.138 11 C -0.137 4.137 12 C 0.359 3.641 13 O -0.433 6.433 14 C -0.120 4.120 15 C -0.195 4.195 16 C -0.134 4.134 17 C -0.153 4.153 18 C 0.100 3.900 19 C -0.498 4.498 20 H 0.096 0.904 21 C -0.140 4.140 22 N -0.426 5.426 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.210 4.210 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.134 0.866 45 H 0.092 0.908 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.963 15.589 -6.008 17.739 hybrid contribution -0.838 -0.259 0.316 0.932 sum 5.125 15.330 -5.692 17.137 Atomic orbital electron populations 1.22126 0.79046 1.03200 1.01939 1.47744 1.07224 1.05479 1.74694 1.21375 0.97681 0.85071 0.96308 1.21941 1.00576 0.96285 0.97855 1.20568 1.01352 0.97270 0.92473 1.19941 0.94388 0.96876 0.96419 1.21125 0.97385 0.99905 0.95017 1.21157 0.99414 0.98168 0.94944 1.21130 0.94792 0.98928 0.99866 1.21133 0.97485 1.00203 0.95000 1.21063 0.99077 0.98485 0.95028 1.18978 0.86848 0.84003 0.74316 1.90656 1.14443 1.87629 1.50590 1.19299 0.97170 0.91925 1.03628 1.20412 1.00976 0.92450 1.05699 1.20667 0.96502 0.96075 1.00187 1.21456 0.94840 0.98948 1.00040 1.17542 0.91896 0.89900 0.90665 1.19469 1.00344 1.17682 1.12316 0.90384 1.25851 0.98985 0.94195 0.94999 1.69785 1.32175 1.22263 1.18383 0.86335 0.80463 0.78393 0.81675 1.19525 1.20155 1.18523 1.21592 0.96883 0.97912 1.04651 0.92253 0.92348 0.89237 0.90948 0.90218 0.91132 0.91780 0.90914 0.90716 0.85978 0.86184 0.86337 0.86238 0.86135 0.88465 0.88638 0.86561 0.90831 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 8.82 59.84 0.53 1.72 16 2 N -0.62 -10.34 2.87 -182.69 -0.52 -10.87 16 3 C 0.12 1.59 5.36 -4.04 -0.02 1.56 16 4 C -0.13 -1.58 5.52 -26.73 -0.15 -1.72 16 5 C -0.08 -0.78 5.35 -27.88 -0.15 -0.93 16 6 C -0.08 -0.81 5.13 -104.62 -0.54 -1.35 16 7 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 8 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 9 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 10 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 11 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 12 C 0.57 11.84 7.38 -12.31 -0.09 11.75 16 13 O -0.55 -12.75 16.41 5.32 0.09 -12.66 16 14 C -0.12 -2.65 5.23 -105.04 -0.55 -3.20 16 15 C -0.18 -4.04 9.61 -38.92 -0.37 -4.41 16 16 C -0.12 -2.66 10.01 -39.73 -0.40 -3.06 16 17 C -0.13 -3.32 8.65 -38.81 -0.34 -3.65 16 18 C 0.10 2.57 5.51 -106.87 -0.59 1.98 16 19 C -0.47 -11.68 9.04 -37.73 -0.34 -12.02 16 20 H 0.08 1.86 7.89 -52.49 -0.41 1.45 16 21 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 22 N -0.80 -19.84 11.18 55.55 0.62 -19.22 16 23 Si 0.91 17.92 29.59 -169.99 -5.03 12.89 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 25 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 27 C -0.19 -4.35 7.41 -38.44 -0.28 -4.64 16 28 H 0.06 0.86 6.65 -51.93 -0.35 0.51 16 29 H 0.06 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.09 1.56 6.08 -51.93 -0.32 1.24 16 31 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.08 1.15 7.50 -51.93 -0.39 0.76 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.10 2.16 7.96 -52.49 -0.42 1.74 16 43 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 44 H 0.12 2.97 6.46 -52.48 -0.34 2.63 16 45 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 46 H 0.11 2.27 5.12 -52.49 -0.27 2.00 16 LS Contribution 381.97 15.07 5.76 5.76 Total: -1.00 -28.90 381.97 -11.12 -40.02 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.69 Total: 8.15 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -5.34 Total: -24.08 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.10 Total: -30.09 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.90 -11.12 -40.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298787708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.697 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds