Wall clock time and date at job start Tue Mar 31 2020 14:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00149 * 2 1 4 4 C 1.52998 * 109.47091 * 270.00188 * 3 2 1 5 5 C 1.53008 * 109.47077 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46672 * 179.97438 * 5 4 3 7 7 C 1.38236 * 119.99775 * 269.72283 * 6 5 4 8 8 C 1.38232 * 119.99782 * 179.77148 * 7 6 5 9 9 C 1.38235 * 119.99994 * 0.50704 * 8 7 6 10 10 C 1.38234 * 120.00093 * 359.74647 * 9 8 7 11 11 C 1.38233 * 119.99905 * 359.97438 * 10 9 8 12 12 C 1.34772 * 120.00284 * 179.97438 * 2 1 3 13 13 O 1.21549 * 120.00536 * 174.39283 * 12 2 1 14 14 C 1.47894 * 119.99724 * 354.39411 * 12 2 1 15 15 C 1.39914 * 120.02692 * 147.12131 * 14 12 2 16 16 C 1.38331 * 120.36307 * 180.02562 * 15 14 12 17 17 C 1.37748 * 120.40683 * 359.97438 * 16 15 14 18 18 C 1.40754 * 120.04109 * 0.02562 * 17 16 15 19 19 C 1.41437 * 120.17794 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00299 * 150.21626 * 19 18 17 21 21 C 1.39939 * 120.00045 * 330.21653 * 19 18 17 22 22 N 1.30828 * 120.00153 * 344.52901 * 21 19 18 23 23 Si 1.86796 * 120.00118 * 164.51862 * 21 19 18 24 24 H 1.48502 * 109.46771 * 90.00397 * 23 21 19 25 25 H 1.48498 * 109.47480 * 210.00115 * 23 21 19 26 26 H 1.48497 * 109.47176 * 330.00560 * 23 21 19 27 27 C 1.38995 * 120.02099 * 327.13717 * 14 12 2 28 28 H 1.08997 * 109.47461 * 269.32001 * 1 2 3 29 29 H 1.09003 * 109.47222 * 29.32299 * 1 2 3 30 30 H 1.08997 * 109.47380 * 149.32020 * 1 2 3 31 31 H 1.08999 * 109.46965 * 29.99722 * 3 2 1 32 32 H 1.08996 * 109.47628 * 150.00079 * 3 2 1 33 33 H 1.08999 * 109.46836 * 299.99613 * 4 3 2 34 34 H 1.08999 * 109.47544 * 59.99961 * 4 3 2 35 35 H 1.08999 * 109.47022 * 299.99561 * 5 4 3 36 36 H 1.08991 * 109.47126 * 59.99871 * 5 4 3 37 37 H 1.08000 * 119.99999 * 359.97438 * 7 6 5 38 38 H 1.08006 * 119.99932 * 180.22617 * 8 7 6 39 39 H 1.08004 * 120.00148 * 179.72516 * 9 8 7 40 40 H 1.07994 * 120.00285 * 179.97438 * 10 9 8 41 41 H 1.07996 * 120.00236 * 179.97438 * 11 10 9 42 42 H 1.08001 * 119.81865 * 359.97438 * 15 14 12 43 43 H 1.07992 * 119.79939 * 180.02562 * 16 15 14 44 44 H 1.08005 * 119.98155 * 179.97438 * 17 16 15 45 45 H 0.97001 * 120.00151 * 179.97438 * 22 21 19 46 46 H 1.07996 * 120.20822 * 359.70835 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2170 3.0358 -1.4425 6 6 3.4686 3.4704 -2.8634 7 6 4.6237 3.0763 -3.5124 8 6 4.8523 3.4711 -4.8173 9 6 3.9308 4.2686 -5.4696 10 6 2.7781 4.6671 -4.8189 11 6 2.5468 4.2675 -3.5159 12 6 2.1389 -1.1671 0.0005 13 8 3.3500 -1.1697 -0.1023 14 6 1.4047 -2.4448 0.1262 15 6 1.8804 -3.5920 -0.5182 16 6 1.1990 -4.7905 -0.4058 17 6 0.0448 -4.8688 0.3420 18 6 -0.4491 -3.7253 0.9975 19 6 -1.6336 -3.8026 1.7665 20 1 -1.7690 -3.1505 2.6167 21 6 -2.6302 -4.7240 1.4257 22 7 -2.6187 -5.2946 0.2485 23 14 -3.9769 -5.1394 2.6518 24 1 -5.1200 -4.2099 2.4652 25 1 -4.4331 -6.5353 2.4320 26 1 -3.4483 -5.0029 4.0327 27 6 0.2414 -2.5067 0.8844 28 1 -0.3634 -0.0122 1.0275 29 1 -0.3634 0.8960 -0.5033 30 1 -0.3634 -0.8838 -0.5243 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0415 0.9507 -1.9563 34 1 1.5001 1.8408 -1.9563 35 1 2.6275 3.7952 -0.9288 36 1 4.1693 2.9059 -0.9286 37 1 5.3461 2.4573 -3.0011 38 1 5.7531 3.1601 -5.3256 39 1 4.1115 4.5807 -6.4877 40 1 2.0584 5.2905 -5.3283 41 1 1.6465 4.5791 -3.0073 42 1 2.7842 -3.5413 -1.1073 43 1 1.5746 -5.6705 -0.9067 44 1 -0.4820 -5.8081 0.4248 45 1 -3.3093 -5.9335 0.0124 46 1 -0.1271 -1.6248 1.3871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298787708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:30 Heat of formation + Delta-G solvation = -11.997319 kcal Electronic energy + Delta-G solvation = -25680.514278 eV Core-core repulsion = 22112.615704 eV Total energy + Delta-G solvation = -3567.898573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19860 -40.15437 -38.91480 -37.10723 -35.53881 -35.11403 -32.23713 -31.78348 -31.75294 -30.73669 -28.04621 -27.13518 -26.87426 -24.19532 -23.44720 -22.90425 -22.54241 -21.69802 -20.69188 -18.98182 -17.79873 -17.59263 -17.39784 -16.83761 -16.59763 -16.39351 -16.30177 -15.94742 -15.31845 -15.19737 -14.84694 -14.47246 -14.39608 -14.31582 -14.22768 -13.85371 -13.75031 -13.53020 -13.29542 -13.00183 -12.87128 -12.82478 -12.63737 -12.56561 -12.47865 -12.24519 -11.97153 -11.93352 -11.80868 -11.55070 -11.35030 -11.04369 -10.74348 -9.80971 -9.78819 -9.51963 -9.42576 -9.33773 -8.61968 -6.35835 0.44770 0.47142 0.51183 0.93933 1.42953 1.48971 1.56721 1.93850 2.12619 2.24714 2.77192 2.89540 3.65711 3.71115 3.78887 3.93335 4.12726 4.16384 4.22771 4.27464 4.33409 4.40879 4.45234 4.49247 4.54966 4.62957 4.67794 4.68416 4.76749 4.88243 4.95730 5.00517 5.03021 5.07676 5.16216 5.17496 5.22251 5.30426 5.32939 5.48321 5.59161 5.63738 5.66794 5.75741 5.81544 5.97370 6.03561 6.15151 6.20865 6.36506 6.61311 6.92027 6.94042 7.18442 8.37239 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.002305 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.786020 B =12142.724927 C =12535.376275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.609 5.609 3 C 0.115 3.885 4 C -0.116 4.116 5 C -0.070 4.070 6 C -0.092 4.092 7 C -0.138 4.138 8 C -0.131 4.131 9 C -0.136 4.136 10 C -0.127 4.127 11 C -0.127 4.127 12 C 0.561 3.439 13 O -0.584 6.584 14 C -0.123 4.123 15 C -0.190 4.190 16 C -0.114 4.114 17 C -0.158 4.158 18 C 0.076 3.924 19 C -0.494 4.494 20 H 0.082 0.918 21 C 0.038 3.962 22 N -0.830 5.830 23 Si 0.979 3.021 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.260 1.260 27 C -0.185 4.185 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.103 0.897 45 H 0.288 0.712 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 17.899 -5.574 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.340 5.340 3 C -0.007 4.007 4 C -0.155 4.155 5 C -0.108 4.108 6 C -0.093 4.093 7 C -0.156 4.156 8 C -0.149 4.149 9 C -0.154 4.154 10 C -0.145 4.145 11 C -0.145 4.145 12 C 0.352 3.648 13 O -0.465 6.465 14 C -0.126 4.126 15 C -0.210 4.210 16 C -0.132 4.132 17 C -0.178 4.178 18 C 0.074 3.926 19 C -0.524 4.524 20 H 0.101 0.899 21 C -0.177 4.177 22 N -0.456 5.456 23 Si 0.800 3.200 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.184 1.184 27 C -0.205 4.205 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.136 0.864 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.615 17.774 -5.770 19.248 hybrid contribution -0.382 -0.853 0.152 0.947 sum 4.233 16.921 -5.618 18.324 Atomic orbital electron populations 1.22205 0.77718 1.03882 1.02651 1.47802 1.08114 1.05415 1.72622 1.21662 0.97558 0.84161 0.97302 1.21797 1.00529 0.96554 0.96639 1.20504 1.01323 0.96395 0.92586 1.20091 0.94748 0.97583 0.96834 1.21298 0.97907 1.00576 0.95803 1.21417 1.00294 0.98345 0.94805 1.21463 0.94604 0.98421 1.00881 1.21482 0.97887 1.00125 0.94996 1.21334 0.99458 0.98204 0.95474 1.18784 0.86447 0.84746 0.74814 1.90637 1.15456 1.88124 1.52332 1.19591 0.97069 0.93001 1.02903 1.20602 1.01333 0.92874 1.06212 1.20868 0.95819 0.96978 0.99584 1.21428 0.95853 0.98630 1.01843 1.17904 0.92677 0.90742 0.91277 1.19731 1.00889 1.18960 1.12798 0.89947 1.26674 1.01046 0.93494 0.96472 1.69846 1.33241 1.22631 1.19909 0.85243 0.77490 0.78300 0.78951 1.18539 1.19655 1.18368 1.21758 0.96578 0.97893 1.04258 0.91318 0.88394 0.91962 0.86964 0.91451 0.94644 0.91210 0.88487 0.90908 0.86368 0.84865 0.84265 0.84063 0.84423 0.88056 0.86494 0.87903 0.90177 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.15 8.82 127.77 1.13 3.28 16 2 N -0.61 -19.55 2.87 -850.17 -2.44 -21.99 16 3 C 0.11 2.84 5.36 86.38 0.46 3.30 16 4 C -0.12 -2.72 5.52 30.60 0.17 -2.55 16 5 C -0.07 -1.28 5.35 29.85 0.16 -1.12 16 6 C -0.09 -1.87 5.13 -19.86 -0.10 -1.98 16 7 C -0.14 -2.94 9.70 22.27 0.22 -2.73 16 8 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 9 C -0.14 -2.28 10.05 22.27 0.22 -2.06 16 10 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 11 C -0.13 -2.25 9.70 22.27 0.22 -2.04 16 12 C 0.56 23.51 7.38 86.80 0.64 24.15 16 13 O -0.58 -27.28 16.41 -3.87 -0.06 -27.35 16 14 C -0.12 -5.62 5.23 -20.13 -0.11 -5.72 16 15 C -0.19 -8.93 9.61 22.70 0.22 -8.72 16 16 C -0.11 -5.36 10.01 22.18 0.22 -5.14 16 17 C -0.16 -8.08 8.65 22.77 0.20 -7.88 16 18 C 0.08 3.90 5.51 -21.32 -0.12 3.78 16 19 C -0.49 -24.83 9.04 23.47 0.21 -24.61 16 20 H 0.08 3.93 7.89 -2.91 -0.02 3.90 16 21 C 0.04 1.80 5.14 85.25 0.44 2.24 16 22 N -0.83 -41.59 11.18 21.83 0.24 -41.35 16 23 Si 0.98 36.26 29.59 68.60 2.03 38.29 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 25 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 26 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 27 C -0.19 -8.52 7.41 23.01 0.17 -8.35 16 28 H 0.07 1.81 6.65 -2.39 -0.02 1.80 16 29 H 0.10 1.97 8.07 -2.39 -0.02 1.96 16 30 H 0.06 2.11 6.08 -2.39 -0.01 2.10 16 31 H 0.11 1.93 8.07 -2.39 -0.02 1.91 16 32 H 0.07 1.87 7.50 -2.39 -0.02 1.86 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 36 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 37 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 38 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.10 4.60 7.96 -2.91 -0.02 4.58 16 43 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.10 5.45 6.46 -2.91 -0.02 5.43 16 45 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 46 H 0.13 5.24 5.12 -2.91 -0.01 5.23 16 Total: -1.00 -63.93 381.97 5.53 -58.40 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.97 Total: 34.25 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 4.80 Total: -40.26 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -2.20 Total: -63.34 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 36.26 SS G_CDS: 2.03 Total: 38.29 kcal Total: -63.93 5.53 -58.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298787708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.407 kcal (2) G-P(sol) polarization free energy of solvation -63.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds