Wall clock time and date at job start Tue Mar 31 2020 14:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99821 * 2 1 4 4 H 1.48503 * 109.47192 * 269.99815 * 3 2 1 5 5 H 1.48507 * 109.47254 * 29.99938 * 3 2 1 6 6 H 1.48498 * 109.47296 * 149.99911 * 3 2 1 7 7 C 1.37877 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99849 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.49814 * 299.91127 * 9 7 2 11 11 C 1.53113 * 109.50532 * 59.99388 * 9 7 2 12 12 C 1.53124 * 109.16394 * 177.63701 * 11 9 7 13 13 C 1.53034 * 109.27483 * 302.34770 * 12 11 9 14 14 N 1.46847 * 109.52646 * 59.17572 * 13 12 11 15 15 C 1.46898 * 111.00163 * 174.15874 * 14 13 12 16 16 C 1.50703 * 109.46888 * 66.04929 * 15 14 13 17 17 C 1.38689 * 120.71974 * 89.99970 * 16 15 14 18 18 N 1.32189 * 119.19724 * 179.71720 * 17 16 15 19 19 C 1.32596 * 120.74210 * 0.28217 * 18 17 16 20 20 C 1.48310 * 119.22489 * 179.97438 * 19 18 17 21 21 C 1.39378 * 120.12186 * 359.72021 * 20 19 18 22 22 C 1.38011 * 119.87431 * 179.72178 * 21 20 19 23 23 C 1.38323 * 120.12257 * 0.55597 * 22 21 20 24 24 C 1.38331 * 120.25533 * 359.72422 * 23 22 21 25 25 C 1.38008 * 120.12162 * 359.97438 * 24 23 22 26 26 N 1.32601 * 121.55871 * 0.02562 * 19 18 17 27 27 C 1.32186 * 120.74152 * 359.97438 * 26 19 18 28 28 C 1.46847 * 111.20098 * 298.25803 * 14 13 12 29 29 H 0.96994 * 119.99955 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.52715 * 57.72940 * 11 9 7 31 31 H 1.09004 * 109.57935 * 297.57582 * 11 9 7 32 32 H 1.08994 * 109.50607 * 182.40797 * 12 11 9 33 33 H 1.08999 * 109.49953 * 62.28214 * 12 11 9 34 34 H 1.09004 * 109.46522 * 299.15915 * 13 12 11 35 35 H 1.09004 * 109.46433 * 179.18927 * 13 12 11 36 36 H 1.08998 * 109.47149 * 306.04884 * 15 14 13 37 37 H 1.09001 * 109.47607 * 186.04536 * 15 14 13 38 38 H 1.08002 * 120.40350 * 359.97438 * 17 16 15 39 39 H 1.08001 * 120.06091 * 0.02562 * 21 20 19 40 40 H 1.08001 * 119.93585 * 180.25285 * 22 21 20 41 41 H 1.08005 * 119.87483 * 179.74311 * 23 22 21 42 42 H 1.07996 * 119.93995 * 180.02562 * 24 23 22 43 43 H 1.07994 * 120.06487 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.40366 * 180.02562 * 27 26 19 45 45 H 1.08991 * 109.46913 * 181.75721 * 28 14 13 46 46 H 1.09001 * 109.45918 * 301.72805 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6252 -2.5578 0.8909 11 6 0.3710 -2.5813 -1.2496 12 6 -0.3455 -3.9344 -1.2719 13 6 0.6940 -5.0570 -1.2389 14 7 1.5099 -4.9349 -0.0241 15 6 2.4268 -6.0746 0.1111 16 6 3.4385 -6.0406 -1.0053 17 6 4.6384 -5.3618 -0.8535 18 7 5.5066 -5.3562 -1.8503 19 6 5.2383 -5.9849 -2.9864 20 6 6.2364 -5.9564 -4.0830 21 6 7.4381 -5.2701 -3.9174 22 6 8.3658 -5.2517 -4.9390 23 6 8.0998 -5.9031 -6.1299 24 6 6.9064 -6.5810 -6.3022 25 6 5.9741 -6.6113 -5.2851 26 7 4.0982 -6.6378 -3.1658 27 6 3.1872 -6.6823 -2.2090 28 6 2.2444 -3.6634 -0.0033 29 1 -0.4850 0.8400 -0.0004 30 1 0.9924 -2.4835 -2.1398 31 1 -0.3666 -1.7789 -1.2305 32 1 -0.9407 -4.0162 -2.1813 33 1 -0.9966 -4.0157 -0.4015 34 1 1.3361 -4.9834 -2.1166 35 1 0.1867 -6.0219 -1.2401 36 1 1.8604 -7.0045 0.0600 37 1 2.9417 -6.0151 1.0700 38 1 4.8625 -4.8475 0.0693 39 1 7.6450 -4.7577 -2.9894 40 1 9.2990 -4.7236 -4.8102 41 1 8.8269 -5.8826 -6.9284 42 1 6.7042 -7.0881 -7.2339 43 1 5.0425 -7.1404 -5.4207 44 1 2.2607 -7.2160 -2.3608 45 1 2.8631 -3.6159 0.8927 46 1 2.8792 -3.5963 -0.8869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595621462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:27 Heat of formation + Delta-G solvation = 53.492089 kcal Electronic energy + Delta-G solvation = -26751.478396 eV Core-core repulsion = 23218.712408 eV Total energy + Delta-G solvation = -3532.765988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30311 -40.12665 -39.51462 -36.15562 -34.87814 -34.44527 -33.04894 -31.87656 -31.71834 -30.94163 -27.56826 -27.03944 -25.81133 -25.06011 -23.39634 -23.11969 -22.89608 -22.29030 -20.33154 -18.84213 -18.59972 -18.48218 -17.07051 -16.93378 -16.51576 -16.25706 -15.84946 -15.84121 -15.53211 -15.44281 -15.00759 -14.60388 -14.51480 -14.40758 -14.26210 -14.20387 -14.01444 -13.64337 -13.33143 -12.92650 -12.87019 -12.58039 -12.36721 -12.34602 -12.10616 -12.01091 -12.00728 -11.81556 -11.66905 -11.43998 -11.07840 -10.76441 -10.70145 -10.40702 -10.29373 -9.90230 -9.49183 -9.22380 -8.11159 -6.24776 -0.65530 0.04654 0.45937 0.63930 1.37104 1.38263 1.48071 2.39453 2.54230 2.71248 3.01740 3.08510 3.15759 3.16557 3.60092 3.77516 3.81084 4.04707 4.05040 4.13753 4.18663 4.25065 4.30267 4.36264 4.48043 4.54740 4.57499 4.65417 4.73627 4.83778 4.87896 4.89337 4.94050 4.98256 5.07291 5.12897 5.14630 5.25907 5.37577 5.49112 5.51903 5.53258 5.57620 5.60269 5.88469 5.92247 6.02256 6.07129 6.16405 6.28233 6.41678 6.87674 6.96363 7.43027 8.93263 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.003478 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.376047 B = 8049.753520 C = 9432.281667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.053 3.947 10 H 0.002 0.998 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.064 3.936 14 N -0.529 5.529 15 C 0.104 3.896 16 C -0.220 4.220 17 C 0.152 3.848 18 N -0.531 5.531 19 C 0.333 3.667 20 C -0.073 4.073 21 C -0.090 4.090 22 C -0.132 4.132 23 C -0.097 4.097 24 C -0.130 4.130 25 C -0.085 4.085 26 N -0.525 5.525 27 C 0.156 3.844 28 C 0.085 3.915 29 H 0.260 0.740 30 H 0.008 0.992 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.016 0.984 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.176 0.824 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.133 0.867 44 H 0.196 0.804 45 H 0.063 0.937 46 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.121 -17.127 -8.676 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.206 1.206 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.065 0.935 9 C 0.034 3.966 10 H 0.021 0.979 11 C -0.143 4.143 12 C -0.150 4.150 13 C -0.064 4.064 14 N -0.250 5.250 15 C -0.025 4.025 16 C -0.226 4.226 17 C -0.015 4.015 18 N -0.245 5.245 19 C 0.069 3.931 20 C -0.075 4.075 21 C -0.109 4.109 22 C -0.150 4.150 23 C -0.116 4.116 24 C -0.148 4.148 25 C -0.104 4.104 26 N -0.238 5.238 27 C -0.010 4.010 28 C -0.043 4.043 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.117 0.883 38 H 0.193 0.807 39 H 0.143 0.857 40 H 0.168 0.832 41 H 0.176 0.824 42 H 0.172 0.828 43 H 0.151 0.849 44 H 0.213 0.787 45 H 0.081 0.919 46 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 11.269 -16.986 -8.943 22.260 hybrid contribution 0.068 1.545 0.254 1.568 sum 11.337 -15.441 -8.689 21.035 Atomic orbital electron populations 1.70015 1.07021 1.27039 1.51165 1.25665 0.95648 1.02132 0.94828 0.85707 0.78964 0.79857 0.78058 1.20601 1.20523 1.19245 1.21504 0.92788 0.92402 1.50798 0.93507 1.18576 0.92999 0.91298 0.93693 0.97937 1.21459 0.99011 0.96755 0.97027 1.21595 0.97668 0.94610 1.01126 1.22112 0.94727 0.99701 0.89847 1.62377 1.22806 1.01925 1.37912 1.21363 0.90677 0.95483 0.94931 1.22719 0.98704 1.00533 1.00670 1.23463 0.88849 0.91974 0.97173 1.68322 1.34894 1.19731 1.01526 1.21674 0.90756 0.89571 0.91140 1.18321 0.93564 1.03065 0.92531 1.21418 0.92525 0.96891 1.00116 1.21447 0.99933 1.00386 0.93250 1.21746 0.97256 0.94907 0.97650 1.21476 0.93771 1.00150 0.99408 1.21425 1.00169 0.97102 0.91751 1.68337 1.02662 1.19432 1.33417 1.23615 0.97439 0.92697 0.87292 1.21955 0.95281 0.88971 0.98096 0.93039 0.97290 0.92446 0.91532 0.92354 0.96551 0.87887 0.86418 0.88252 0.80667 0.85678 0.83216 0.82446 0.82773 0.84921 0.78733 0.91883 0.97681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.46 11.35 21.45 0.24 -53.21 16 2 C 0.02 0.92 5.30 84.65 0.45 1.37 16 3 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -30.16 8.57 25.60 0.22 -29.94 16 8 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.05 2.69 2.26 -11.49 -0.03 2.66 16 10 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 11 C -0.10 -5.06 5.02 30.67 0.15 -4.91 16 12 C -0.11 -4.18 6.09 30.65 0.19 -4.00 16 13 C 0.06 1.95 4.86 86.32 0.42 2.37 16 14 N -0.53 -16.91 4.86 -900.93 -4.38 -21.29 16 15 C 0.10 2.40 5.59 85.56 0.48 2.88 16 16 C -0.22 -5.71 4.05 -19.64 -0.08 -5.79 16 17 C 0.15 4.46 9.35 84.75 0.79 5.25 16 18 N -0.53 -17.25 9.45 -189.16 -1.79 -19.04 16 19 C 0.33 10.53 7.55 137.53 1.04 11.57 16 20 C -0.07 -2.04 5.88 -20.05 -0.12 -2.16 16 21 C -0.09 -2.25 9.56 22.49 0.22 -2.04 16 22 C -0.13 -2.45 10.03 22.24 0.22 -2.23 16 23 C -0.10 -1.50 10.04 22.31 0.22 -1.27 16 24 C -0.13 -2.24 10.03 22.24 0.22 -2.02 16 25 C -0.08 -1.98 9.56 22.49 0.22 -1.77 16 26 N -0.53 -15.50 9.45 -189.16 -1.79 -17.29 16 27 C 0.16 3.95 9.44 84.75 0.80 4.75 16 28 C 0.08 3.43 3.81 86.33 0.33 3.76 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.01 0.42 8.14 -2.38 -0.02 0.41 16 31 H 0.06 3.16 6.15 -2.39 -0.01 3.15 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.02 0.53 6.55 -2.39 -0.02 0.52 16 35 H 0.10 2.35 8.06 -2.38 -0.02 2.33 16 36 H 0.12 1.98 8.02 -2.39 -0.02 1.96 16 37 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 38 H 0.18 4.65 8.05 -2.91 -0.02 4.62 16 39 H 0.13 3.30 7.51 -2.91 -0.02 3.28 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 42 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 43 H 0.13 3.05 7.51 -2.91 -0.02 3.03 16 44 H 0.20 3.55 8.06 -2.91 -0.02 3.52 16 45 H 0.06 2.48 8.12 -2.39 -0.02 2.46 16 46 H 0.01 0.22 6.47 -2.39 -0.02 0.20 16 Total: -1.00 -69.35 368.40 1.03 -68.32 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.97 Total: 17.43 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 5.74 Total: -21.51 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -7.71 Total: -110.83 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.35 1.03 -68.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595621462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.817 kcal (2) G-P(sol) polarization free energy of solvation -69.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds