Wall clock time and date at job start Tue Mar 31 2020 13:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47296 * 2 1 4 4 C 1.53006 * 109.46961 * 239.99808 * 2 1 3 5 5 C 1.50699 * 109.46914 * 65.00134 * 4 2 1 6 6 H 1.07998 * 120.00010 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99646 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00401 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99606 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47514 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47021 * 120.00457 * 9 7 5 12 12 H 1.48504 * 109.47374 * 240.00100 * 9 7 5 13 13 C 1.53004 * 109.47034 * 120.00268 * 2 1 3 14 14 N 1.46901 * 109.47036 * 294.30445 * 13 2 1 15 15 C 1.46906 * 110.99626 * 269.43697 * 14 13 2 16 16 C 1.50704 * 109.47117 * 71.02005 * 15 14 13 17 17 C 1.33385 * 125.20265 * 82.11943 * 16 15 14 18 18 C 1.38427 * 114.92190 * 179.97438 * 17 16 15 19 19 C 1.33389 * 114.91651 * 0.02562 * 18 17 16 20 20 S 1.75879 * 125.20141 * 261.81060 * 16 15 14 21 21 C 1.46894 * 111.00242 * 145.48326 * 14 13 2 22 22 C 1.52999 * 109.47203 * 190.00089 * 21 14 13 23 23 H 1.09005 * 110.55057 * 307.87422 * 22 21 14 24 24 C 1.54998 * 110.61851 * 185.00004 * 22 21 14 25 25 C 1.54812 * 102.09083 * 204.31653 * 24 22 21 26 26 C 1.54103 * 104.18771 * 20.87643 * 25 24 22 27 27 O 1.43744 * 107.42225 * 1.95728 * 26 25 24 28 28 H 1.09000 * 109.47296 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46675 * 300.00356 * 1 2 3 30 30 H 1.09003 * 109.46564 * 59.99680 * 1 2 3 31 31 H 1.09001 * 109.47079 * 185.00405 * 4 2 1 32 32 H 1.09004 * 109.47222 * 305.00036 * 4 2 1 33 33 H 0.97000 * 120.00274 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47026 * 174.29906 * 13 2 1 35 35 H 1.09004 * 109.46897 * 54.30321 * 13 2 1 36 36 H 1.08998 * 109.46712 * 191.01858 * 15 14 13 37 37 H 1.08993 * 109.46869 * 311.01548 * 15 14 13 38 38 H 1.08001 * 122.54137 * 359.95656 * 17 16 15 39 39 H 1.08000 * 122.54355 * 179.97438 * 18 17 16 40 40 H 1.08004 * 125.20052 * 180.02562 * 19 18 17 41 41 H 1.08996 * 109.47084 * 69.99678 * 21 14 13 42 42 H 1.09001 * 109.46724 * 309.99848 * 21 14 13 43 43 H 1.08997 * 110.90836 * 86.12059 * 24 22 21 44 44 H 1.08993 * 110.90263 * 322.50996 * 24 22 21 45 45 H 1.09000 * 110.48651 * 262.20281 * 25 24 22 46 46 H 1.08999 * 110.48841 * 139.55723 * 25 24 22 47 47 H 1.09007 * 109.87715 * 121.45827 * 26 25 24 48 48 H 1.09000 * 109.87881 * 242.45513 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 2.6764 -1.5188 -3.8512 9 14 1.4984 0.5626 -5.2496 10 1 0.7412 1.7736 -4.8435 11 1 2.7163 0.9681 -5.9964 12 1 0.6450 -0.2871 -6.1185 13 6 2.0400 -0.7213 1.2492 14 7 1.6658 0.0459 2.4448 15 6 2.7161 1.0088 2.8024 16 6 2.7435 2.1224 1.7873 17 6 1.9336 3.1822 1.7866 18 6 2.1455 4.0775 0.7523 19 6 3.1272 3.7443 -0.0872 20 16 3.8534 2.2271 0.4270 21 6 1.3652 -0.8478 3.5711 22 6 0.7445 -0.0392 4.7121 23 1 1.3694 0.8199 4.9564 24 6 0.5319 -0.9321 5.9611 25 6 -0.6091 -0.1907 6.6994 26 6 -1.2718 0.6681 5.6048 27 8 -0.5931 0.3887 4.3688 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 3.1264 -0.7996 -1.2056 32 1 1.6054 -1.7199 -1.2952 33 1 2.9242 -1.8414 -4.7317 34 1 3.1252 -0.8106 1.1997 35 1 1.5958 -1.7153 1.3016 36 1 2.5093 1.4220 3.7896 37 1 3.6823 0.5045 2.8148 38 1 1.1702 3.3305 2.5359 39 1 1.5599 4.9771 0.6334 40 1 3.4328 4.3207 -0.9478 41 1 2.2856 -1.3178 3.9176 42 1 0.6640 -1.6169 3.2475 43 1 1.4333 -0.9662 6.5729 44 1 0.2207 -1.9362 5.6729 45 1 -0.2043 0.4430 7.4885 46 1 -1.3241 -0.9034 7.1102 47 1 -2.3262 0.4064 5.5160 48 1 -1.1719 1.7251 5.8518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602435607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:22 Heat of formation + Delta-G solvation = -14.574418 kcal Electronic energy + Delta-G solvation = -26313.096917 eV Core-core repulsion = 22880.530544 eV Total energy + Delta-G solvation = -3432.566373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.65533 -38.20362 -36.69174 -34.41326 -32.24952 -31.95373 -31.02576 -29.42440 -26.82956 -25.96523 -25.86106 -23.80904 -22.79450 -22.03695 -21.35883 -20.65940 -18.87612 -18.71205 -17.11635 -16.55155 -16.23304 -15.85601 -15.50220 -15.32760 -14.88155 -14.46809 -14.12568 -13.93280 -13.57619 -13.28312 -12.78822 -12.56331 -12.52909 -12.35334 -12.17140 -12.02828 -11.86983 -11.78293 -11.40614 -11.35829 -11.26754 -11.10859 -10.94079 -10.80778 -10.73664 -10.53885 -10.25881 -10.16415 -10.12911 -9.63016 -9.46324 -8.94851 -8.84516 -8.24458 -8.20047 -7.94288 -7.72823 -5.86894 -3.85663 1.42538 2.09584 2.47100 3.15800 3.37567 3.45208 3.50141 3.77650 4.13638 4.38881 4.57121 4.64735 4.72846 4.93454 5.02488 5.05745 5.26537 5.35019 5.40606 5.48158 5.48403 5.49488 5.53923 5.59704 5.61386 5.69847 5.80300 5.85224 5.91592 5.97427 6.01157 6.08609 6.34866 6.52387 6.55847 6.69329 6.73191 6.89344 6.90393 6.96875 7.18840 7.30258 7.39808 7.47231 7.56485 7.85373 8.03416 8.15804 8.62165 9.20847 9.76543 11.24958 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.003948 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.803906 B = 7089.817652 C = 8050.472241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 H 0.073 0.927 4 C 0.030 3.970 5 C -0.498 4.498 6 H 0.055 0.945 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.883 3.117 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.060 3.940 14 N -0.521 5.521 15 C 0.126 3.874 16 C -0.169 4.169 17 C -0.122 4.122 18 C -0.142 4.142 19 C -0.212 4.212 20 S 0.128 5.872 21 C 0.061 3.939 22 C 0.081 3.919 23 H 0.069 0.931 24 C -0.152 4.152 25 C -0.155 4.155 26 C 0.043 3.957 27 O -0.351 6.351 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.011 0.989 32 H 0.010 0.990 33 H 0.256 0.744 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.158 0.842 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 5.596 21.412 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.007 4.007 5 C -0.537 4.537 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.711 3.289 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.067 4.067 14 N -0.244 5.244 15 C -0.004 4.004 16 C -0.287 4.287 17 C -0.153 4.153 18 C -0.173 4.173 19 C -0.348 4.348 20 S 0.393 5.607 21 C -0.067 4.067 22 C 0.023 3.977 23 H 0.086 0.914 24 C -0.190 4.190 25 C -0.193 4.193 26 C -0.035 4.035 27 O -0.270 6.270 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.176 0.824 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.422 4.858 20.402 20.977 hybrid contribution -0.702 0.834 -0.185 1.106 sum -1.124 5.692 20.216 21.033 Atomic orbital electron populations 1.21547 0.96239 0.99781 1.00184 1.21460 0.95647 1.00602 0.92853 0.90844 1.19093 0.95707 0.95190 0.90731 1.21243 1.33658 1.07911 0.90841 0.92720 1.24981 0.95603 0.95092 0.98860 1.69973 1.39672 1.21370 1.22953 0.86673 0.78204 0.80299 0.83690 1.19777 1.21248 1.21208 1.22451 0.97810 0.96326 0.90126 1.62016 1.41254 1.17121 1.04053 1.20588 0.93161 0.91123 0.95502 1.24208 1.02741 1.00384 1.01377 1.19910 1.00485 0.94424 1.00479 1.20044 0.99604 1.01606 0.96093 1.25559 1.03590 1.00633 1.04998 1.84533 1.34944 1.19504 1.21702 1.22178 0.98902 0.94812 0.90809 1.23253 0.85627 0.95661 0.93121 0.91350 1.23163 0.98858 1.00181 0.96799 1.22920 0.98241 0.99420 0.98713 1.23119 0.97423 0.98344 0.84575 1.89114 1.23999 1.87410 1.26481 0.94969 0.93647 0.93245 0.97072 0.97195 0.93381 0.94801 0.91998 0.89745 0.94243 0.84945 0.85031 0.82412 0.93772 0.89584 0.90393 0.90292 0.90951 0.90662 0.90195 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 8.90 37.16 0.33 -2.24 16 2 C -0.09 -1.85 2.22 -90.61 -0.20 -2.05 16 3 H 0.07 1.60 3.96 -49.01 -0.19 1.40 16 4 C 0.03 0.80 4.45 -27.88 -0.12 0.67 16 5 C -0.50 -14.24 8.41 -34.44 -0.29 -14.53 16 6 H 0.05 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 9 Si 0.88 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 C 0.06 1.08 4.41 -3.82 -0.02 1.06 16 14 N -0.52 -7.88 3.86 -236.07 -0.91 -8.79 16 15 C 0.13 1.73 5.28 -4.97 -0.03 1.70 16 16 C -0.17 -2.62 4.07 -36.00 -0.15 -2.77 16 17 C -0.12 -1.83 10.05 -41.21 -0.41 -2.24 16 18 C -0.14 -2.11 10.18 -41.21 -0.42 -2.53 16 19 C -0.21 -3.31 11.23 29.04 0.33 -2.98 16 20 S 0.13 2.14 21.30 -107.50 -2.29 -0.15 16 21 C 0.06 0.76 4.61 -3.83 -0.02 0.74 16 22 C 0.08 0.89 3.31 -25.68 -0.09 0.80 16 23 H 0.07 0.72 6.10 -51.93 -0.32 0.40 16 24 C -0.15 -1.25 6.59 -24.72 -0.16 -1.41 16 25 C -0.16 -1.16 7.01 -25.20 -0.18 -1.34 16 26 C 0.04 0.41 7.69 37.73 0.29 0.70 16 27 O -0.35 -4.68 11.25 -35.23 -0.40 -5.07 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.92 7.77 -51.93 -0.40 0.51 16 30 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.03 0.62 7.53 -51.93 -0.39 0.23 16 35 H 0.06 1.11 7.50 -51.93 -0.39 0.72 16 36 H 0.08 0.99 5.88 -51.93 -0.31 0.69 16 37 H 0.04 0.53 7.76 -51.93 -0.40 0.12 16 38 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.16 2.19 8.06 -52.48 -0.42 1.77 16 41 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.09 1.14 7.79 -51.93 -0.40 0.73 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -31.94 386.52 -11.45 -43.40 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.17 Total: -0.79 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: -1.23 Total: -24.92 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.18 Total: -35.53 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.40 Total: -5.07 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.29 Total: -0.15 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.94 -11.45 -43.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602435607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.822 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds