Wall clock time and date at job start Tue Mar 31 2020 13:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.53002 * 109.46808 * 240.00116 * 2 1 3 5 5 C 1.50703 * 109.47353 * 65.00064 * 4 2 1 6 6 H 1.07998 * 119.99871 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00395 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99544 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46757 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.47259 * 209.99904 * 9 7 5 12 12 H 1.48494 * 109.47333 * 330.00172 * 9 7 5 13 13 C 1.52998 * 109.47264 * 119.99992 * 2 1 3 14 14 N 1.46895 * 109.47274 * 184.19064 * 13 2 1 15 15 C 1.46904 * 110.99804 * 75.47383 * 14 13 2 16 16 C 1.46901 * 111.00205 * 199.43036 * 14 13 2 17 17 H 1.08994 * 109.46925 * 298.60629 * 16 14 13 18 18 C 1.53001 * 109.47062 * 178.60520 * 16 14 13 19 19 C 1.50696 * 109.46709 * 58.60648 * 16 14 13 20 20 C 1.38232 * 120.00665 * 46.46691 * 19 16 14 21 21 C 1.38233 * 120.00189 * 179.76613 * 20 19 16 22 22 C 1.38236 * 120.00094 * 0.50332 * 21 20 19 23 23 S 1.76198 * 120.00109 * 179.72533 * 22 21 20 24 24 C 1.81402 * 103.00122 * 270.02296 * 23 22 21 25 25 O 1.42101 * 102.99648 * 156.16919 * 23 22 21 26 26 C 1.38241 * 119.99828 * 359.74871 * 22 21 20 27 27 C 1.38237 * 119.99913 * 359.97438 * 26 22 21 28 28 H 1.09000 * 109.47032 * 174.56583 * 1 2 3 29 29 H 1.09007 * 109.47352 * 54.56669 * 1 2 3 30 30 H 1.09003 * 109.47213 * 294.57108 * 1 2 3 31 31 H 1.09008 * 109.46854 * 184.99827 * 4 2 1 32 32 H 1.08992 * 109.47055 * 304.99681 * 4 2 1 33 33 H 0.97000 * 119.99949 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47139 * 304.19031 * 13 2 1 35 35 H 1.08997 * 109.46888 * 64.18940 * 13 2 1 36 36 H 1.09000 * 109.46828 * 66.55665 * 15 14 13 37 37 H 1.09008 * 109.46656 * 186.55252 * 15 14 13 38 38 H 1.08994 * 109.47457 * 306.54787 * 15 14 13 39 39 H 1.08996 * 109.46956 * 59.99811 * 18 16 14 40 40 H 1.09000 * 109.47005 * 180.02562 * 18 16 14 41 41 H 1.09004 * 109.47238 * 299.99809 * 18 16 14 42 42 H 1.08001 * 119.99821 * 359.97438 * 20 19 16 43 43 H 1.08004 * 119.99898 * 180.23131 * 21 20 19 44 44 H 1.08993 * 109.46967 * 59.99665 * 24 23 22 45 45 H 1.08997 * 109.46762 * 180.02562 * 24 23 22 46 46 H 1.09004 * 109.46701 * 299.99604 * 24 23 22 47 47 H 1.07997 * 119.99662 * 179.97438 * 26 22 21 48 48 H 1.07999 * 119.99528 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4767 6 1 1.0799 0.9742 -2.3758 7 6 1.9932 -0.4018 -3.7283 8 7 2.6771 -1.5183 -3.8512 9 14 1.4983 0.5627 -5.2497 10 1 2.5631 1.5430 -5.5823 11 1 1.3121 -0.3714 -6.3890 12 1 0.2267 1.2831 -4.9872 13 6 2.0400 -0.7212 1.2492 14 7 3.5055 -0.6342 1.3009 15 6 3.9389 0.7067 1.7158 16 6 4.0632 -1.6652 2.1862 17 1 3.6888 -1.5159 3.1989 18 6 5.5900 -1.5652 2.1871 19 6 3.6494 -3.0279 1.6934 20 6 3.7603 -3.3408 0.3516 21 6 3.3852 -4.5924 -0.0996 22 6 2.8893 -5.5276 0.7894 23 16 2.4043 -7.1205 0.2131 24 6 0.6540 -6.8886 -0.2029 25 8 2.5115 -7.9279 1.3775 26 6 2.7734 -5.2130 2.1305 27 6 3.1540 -3.9633 2.5826 28 1 -0.3633 -1.0231 -0.0973 29 1 -0.3634 0.5958 -0.8374 30 1 -0.3634 0.4273 0.9346 31 1 3.1263 -0.7995 -1.2057 32 1 1.6053 -1.7197 -1.2952 33 1 2.9250 -1.8408 -4.7317 34 1 1.6167 -0.2526 2.1376 35 1 1.7393 -1.7682 1.2124 36 1 3.6399 0.8815 2.7494 37 1 5.0235 0.7795 1.6340 38 1 3.4751 1.4539 1.0720 39 1 5.8893 -0.5796 2.5434 40 1 6.0038 -2.3305 2.8437 41 1 5.9645 -1.7146 1.1744 42 1 4.1433 -2.6085 -0.3438 43 1 3.4754 -4.8381 -1.1475 44 1 0.5616 -6.1196 -0.9698 45 1 0.2420 -7.8260 -0.5763 46 1 0.1065 -6.5809 0.6881 47 1 2.3856 -5.9435 2.8250 48 1 3.0630 -3.7174 3.6303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602483558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:47 Heat of formation + Delta-G solvation = -19.326092 kcal Electronic energy + Delta-G solvation = -26228.946285 eV Core-core repulsion = 22796.173863 eV Total energy + Delta-G solvation = -3432.772421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.63044 -37.47663 -35.64460 -34.80814 -32.40021 -31.47268 -30.68306 -29.25806 -28.68272 -27.08724 -26.56757 -24.60357 -22.91760 -22.67874 -22.18168 -19.82451 -18.81755 -17.96840 -16.64237 -16.36746 -15.83716 -15.61065 -14.83224 -14.65392 -14.50524 -14.24266 -14.15503 -13.63321 -13.56528 -13.34499 -13.13862 -12.91601 -12.68391 -12.46915 -12.33749 -12.12761 -11.91736 -11.79009 -11.72624 -11.49046 -11.30648 -11.21228 -10.88002 -10.85491 -10.77938 -10.69336 -10.33856 -10.13440 -10.06757 -9.64401 -9.07964 -8.86957 -8.81934 -8.60862 -8.26431 -8.24919 -7.87063 -5.91424 -3.90157 1.07469 1.67601 1.99974 2.77732 3.34708 3.41451 3.44500 3.79875 4.03306 4.22503 4.52285 4.78960 5.06602 5.19251 5.23128 5.30825 5.35790 5.37254 5.44698 5.47527 5.62328 5.65574 5.77961 5.78350 5.80883 5.91075 5.97183 6.02090 6.06105 6.09591 6.19458 6.27013 6.31068 6.34435 6.39598 6.47622 6.52596 6.63680 6.84833 6.97352 7.04479 7.22866 7.29204 7.46327 7.52302 7.84050 8.06135 8.18005 8.56641 9.16505 9.71753 11.19682 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.004672 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.221053 B = 5991.881762 C = 7809.637390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.041 3.959 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.520 5.520 15 C 0.025 3.975 16 C 0.116 3.884 17 H 0.040 0.960 18 C -0.142 4.142 19 C -0.041 4.041 20 C -0.089 4.089 21 C -0.039 4.039 22 C -0.463 4.463 23 S 1.327 4.673 24 C -0.496 4.496 25 O -0.869 6.869 26 C -0.061 4.061 27 C -0.139 4.139 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.026 0.974 31 H 0.033 0.967 32 H 0.009 0.991 33 H 0.257 0.743 34 H 0.016 0.984 35 H 0.068 0.932 36 H 0.015 0.985 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.147 0.853 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.119 0.881 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.935 -6.010 9.073 11.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.004 3.996 5 C -0.551 4.551 6 H 0.068 0.932 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.066 4.066 14 N -0.244 5.244 15 C -0.123 4.123 16 C 0.008 3.992 17 H 0.058 0.942 18 C -0.199 4.199 19 C -0.042 4.042 20 C -0.109 4.109 21 C -0.058 4.058 22 C -0.561 4.561 23 S 1.525 4.475 24 C -0.653 4.653 25 O -0.865 6.865 26 C -0.080 4.080 27 C -0.159 4.159 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.087 0.913 36 H 0.034 0.966 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.164 0.836 43 H 0.157 0.843 44 H 0.134 0.866 45 H 0.121 0.879 46 H 0.098 0.902 47 H 0.137 0.863 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.717 -7.048 8.415 11.589 hybrid contribution -1.981 1.640 1.725 3.097 sum 1.736 -5.408 10.140 11.622 Atomic orbital electron populations 1.21695 0.96649 1.01097 0.99513 1.21216 0.93991 0.99219 0.95734 0.92722 1.19026 0.97237 0.94371 0.88989 1.21329 1.34186 1.08118 0.91471 0.93224 1.24923 0.95508 0.95063 0.98636 1.69940 1.39256 1.21134 1.23002 0.86764 0.78810 0.79975 0.83395 1.20919 1.21400 1.20215 1.22312 0.85794 1.01061 0.97414 1.61969 1.10233 1.02629 1.49566 1.22428 1.01210 0.90882 0.97746 1.20606 0.95700 0.89082 0.93802 0.94210 1.21877 0.93487 1.01455 1.03099 1.19940 0.95665 0.94374 0.94194 1.21379 0.97950 0.96379 0.95147 1.20976 0.93737 0.92135 0.98979 1.27438 1.12346 1.16610 0.99677 1.69417 0.91089 0.79542 1.07442 1.27743 1.21102 1.08290 1.08120 1.93042 1.82023 1.60046 1.51366 1.20884 0.96551 0.95852 0.94753 1.21015 1.01628 0.94070 0.99166 0.93678 0.92030 0.95503 0.94845 0.97286 0.93326 0.96536 0.91320 0.96612 0.91413 0.90705 0.92171 0.92531 0.91062 0.83553 0.84349 0.86564 0.87927 0.90233 0.86300 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.91 37.16 0.33 -2.14 16 2 C -0.08 -1.64 2.39 -90.62 -0.22 -1.86 16 3 H 0.05 1.11 6.70 -51.93 -0.35 0.76 16 4 C 0.04 0.98 4.39 -27.88 -0.12 0.86 16 5 C -0.51 -13.79 8.48 -34.44 -0.29 -14.08 16 6 H 0.05 1.33 7.06 -52.49 -0.37 0.96 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 9 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.06 1.06 4.13 -3.83 -0.02 1.04 16 14 N -0.52 -8.24 3.42 -236.29 -0.81 -9.04 16 15 C 0.03 0.35 8.90 60.07 0.53 0.89 16 16 C 0.12 1.63 2.28 -68.87 -0.16 1.47 16 17 H 0.04 0.54 7.94 -51.93 -0.41 0.12 16 18 C -0.14 -1.72 8.80 37.16 0.33 -1.39 16 19 C -0.04 -0.62 3.27 -104.62 -0.34 -0.96 16 20 C -0.09 -1.44 8.84 -39.59 -0.35 -1.79 16 21 C -0.04 -0.56 9.75 -39.58 -0.39 -0.95 16 22 C -0.46 -6.43 5.61 -39.58 -0.22 -6.66 16 23 S 1.33 14.68 14.19 -107.50 -1.53 13.16 16 24 C -0.50 -5.30 10.70 101.05 1.08 -4.22 16 25 O -0.87 -14.47 16.90 -35.23 -0.60 -15.07 16 26 C -0.06 -0.92 9.44 -39.58 -0.37 -1.30 16 27 C -0.14 -2.01 9.67 -39.58 -0.38 -2.40 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.22 7.12 -51.93 -0.37 0.85 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.86 7.02 -51.92 -0.36 0.49 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.02 0.27 8.00 -51.93 -0.42 -0.15 16 35 H 0.07 1.26 6.32 -51.93 -0.33 0.93 16 36 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.85 6.41 -51.92 -0.33 0.52 16 38 H 0.07 1.12 6.63 -51.93 -0.34 0.77 16 39 H 0.06 0.65 6.42 -51.93 -0.33 0.32 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 42 H 0.15 2.66 7.34 -52.49 -0.39 2.27 16 43 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 47 H 0.12 1.82 7.45 -52.49 -0.39 1.43 16 48 H 0.11 1.45 7.99 -52.49 -0.42 1.04 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -33.41 391.63 -10.17 -43.58 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.17 Total: 1.71 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: -0.68 Total: -31.96 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: -0.07 Total: -33.36 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.60 Total: -15.07 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 14.68 SS G_CDS: -1.53 Total: 13.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.41 -10.17 -43.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602483558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.252 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds