Wall clock time and date at job start Tue Mar 31 2020 13:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46957 * 2 1 4 4 C 1.53002 * 109.46808 * 240.00116 * 2 1 3 5 5 C 1.50703 * 109.47353 * 65.00064 * 4 2 1 6 6 H 1.07998 * 119.99871 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00395 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99544 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46757 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.47259 * 209.99904 * 9 7 5 12 12 H 1.48494 * 109.47333 * 330.00172 * 9 7 5 13 13 C 1.52998 * 109.47264 * 119.99992 * 2 1 3 14 14 N 1.46895 * 109.47274 * 184.19064 * 13 2 1 15 15 C 1.46904 * 110.99804 * 75.47383 * 14 13 2 16 16 C 1.46901 * 111.00205 * 199.43036 * 14 13 2 17 17 H 1.08994 * 109.46925 * 298.60629 * 16 14 13 18 18 C 1.53001 * 109.47062 * 178.60520 * 16 14 13 19 19 C 1.50696 * 109.46709 * 58.60648 * 16 14 13 20 20 C 1.38232 * 120.00665 * 46.46691 * 19 16 14 21 21 C 1.38233 * 120.00189 * 179.76613 * 20 19 16 22 22 C 1.38236 * 120.00094 * 0.50332 * 21 20 19 23 23 S 1.76198 * 120.00109 * 179.72533 * 22 21 20 24 24 C 1.81402 * 103.00122 * 270.02296 * 23 22 21 25 25 O 1.42101 * 102.99648 * 156.16919 * 23 22 21 26 26 C 1.38241 * 119.99828 * 359.74871 * 22 21 20 27 27 C 1.38237 * 119.99913 * 359.97438 * 26 22 21 28 28 H 1.09000 * 109.47032 * 174.56583 * 1 2 3 29 29 H 1.09007 * 109.47352 * 54.56669 * 1 2 3 30 30 H 1.09003 * 109.47213 * 294.57108 * 1 2 3 31 31 H 1.09008 * 109.46854 * 184.99827 * 4 2 1 32 32 H 1.08992 * 109.47055 * 304.99681 * 4 2 1 33 33 H 0.97000 * 119.99949 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47139 * 304.19031 * 13 2 1 35 35 H 1.08997 * 109.46888 * 64.18940 * 13 2 1 36 36 H 1.09000 * 109.46828 * 66.55665 * 15 14 13 37 37 H 1.09008 * 109.46656 * 186.55252 * 15 14 13 38 38 H 1.08994 * 109.47457 * 306.54787 * 15 14 13 39 39 H 1.08996 * 109.46956 * 59.99811 * 18 16 14 40 40 H 1.09000 * 109.47005 * 180.02562 * 18 16 14 41 41 H 1.09004 * 109.47238 * 299.99809 * 18 16 14 42 42 H 1.08001 * 119.99821 * 359.97438 * 20 19 16 43 43 H 1.08004 * 119.99898 * 180.23131 * 21 20 19 44 44 H 1.08993 * 109.46967 * 59.99665 * 24 23 22 45 45 H 1.08997 * 109.46762 * 180.02562 * 24 23 22 46 46 H 1.09004 * 109.46701 * 299.99604 * 24 23 22 47 47 H 1.07997 * 119.99662 * 179.97438 * 26 22 21 48 48 H 1.07999 * 119.99528 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4767 6 1 1.0799 0.9742 -2.3758 7 6 1.9932 -0.4018 -3.7283 8 7 2.6771 -1.5183 -3.8512 9 14 1.4983 0.5627 -5.2497 10 1 2.5631 1.5430 -5.5823 11 1 1.3121 -0.3714 -6.3890 12 1 0.2267 1.2831 -4.9872 13 6 2.0400 -0.7212 1.2492 14 7 3.5055 -0.6342 1.3009 15 6 3.9389 0.7067 1.7158 16 6 4.0632 -1.6652 2.1862 17 1 3.6888 -1.5159 3.1989 18 6 5.5900 -1.5652 2.1871 19 6 3.6494 -3.0279 1.6934 20 6 3.7603 -3.3408 0.3516 21 6 3.3852 -4.5924 -0.0996 22 6 2.8893 -5.5276 0.7894 23 16 2.4043 -7.1205 0.2131 24 6 0.6540 -6.8886 -0.2029 25 8 2.5115 -7.9279 1.3775 26 6 2.7734 -5.2130 2.1305 27 6 3.1540 -3.9633 2.5826 28 1 -0.3633 -1.0231 -0.0973 29 1 -0.3634 0.5958 -0.8374 30 1 -0.3634 0.4273 0.9346 31 1 3.1263 -0.7995 -1.2057 32 1 1.6053 -1.7197 -1.2952 33 1 2.9250 -1.8408 -4.7317 34 1 1.6167 -0.2526 2.1376 35 1 1.7393 -1.7682 1.2124 36 1 3.6399 0.8815 2.7494 37 1 5.0235 0.7795 1.6340 38 1 3.4751 1.4539 1.0720 39 1 5.8893 -0.5796 2.5434 40 1 6.0038 -2.3305 2.8437 41 1 5.9645 -1.7146 1.1744 42 1 4.1433 -2.6085 -0.3438 43 1 3.4754 -4.8381 -1.1475 44 1 0.5616 -6.1196 -0.9698 45 1 0.2420 -7.8260 -0.5763 46 1 0.1065 -6.5809 0.6881 47 1 2.3856 -5.9435 2.8250 48 1 3.0630 -3.7174 3.6303 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602483558.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:46 Heat of formation + Delta-G solvation = -38.908000 kcal Electronic energy + Delta-G solvation = -26229.795420 eV Core-core repulsion = 22796.173863 eV Total energy + Delta-G solvation = -3433.621557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.166 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.80644 -38.74521 -36.83427 -36.38496 -34.24218 -32.81034 -31.85191 -30.39352 -29.61516 -28.91198 -27.85049 -25.98931 -24.55535 -23.97809 -23.40918 -20.98702 -20.43061 -19.03748 -18.37028 -17.72930 -17.11875 -16.73107 -16.48566 -15.87825 -15.72962 -15.61131 -15.38488 -15.00008 -14.66715 -14.59809 -14.31275 -14.13991 -13.93755 -13.87366 -13.70138 -13.38626 -13.26214 -13.12456 -12.91854 -12.84443 -12.74543 -12.62010 -12.48836 -12.43819 -12.19294 -11.95554 -11.86400 -11.75467 -11.38452 -11.22437 -10.84774 -10.80087 -10.34598 -9.95007 -9.81962 -9.29870 -9.08125 -8.01133 -6.06756 -0.03500 0.48911 0.99588 1.45077 1.46495 1.55227 1.79718 2.51651 2.67180 2.97799 3.06220 3.31519 3.67310 3.93313 4.06974 4.12575 4.22510 4.28969 4.31627 4.38187 4.47089 4.50261 4.54052 4.59540 4.66299 4.67654 4.77666 4.84315 4.87937 4.91757 4.95854 4.99232 5.12563 5.14228 5.15303 5.31853 5.33191 5.35864 5.42127 5.46544 5.56947 5.66975 5.76145 6.03779 6.05743 6.15685 6.28043 6.30963 6.50457 7.08908 7.58396 9.09502 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.004672 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.221053 B = 5991.881762 C = 7809.637390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.078 4.078 3 H 0.051 0.949 4 C 0.059 3.941 5 C -0.532 4.532 6 H 0.047 0.953 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.943 3.057 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.074 3.926 14 N -0.540 5.540 15 C 0.027 3.973 16 C 0.118 3.882 17 H 0.053 0.947 18 C -0.136 4.136 19 C -0.044 4.044 20 C -0.107 4.107 21 C -0.044 4.044 22 C -0.470 4.470 23 S 1.392 4.608 24 C -0.497 4.497 25 O -0.920 6.920 26 C -0.077 4.077 27 C -0.140 4.140 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.011 0.989 32 H -0.019 1.019 33 H 0.260 0.740 34 H 0.034 0.966 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.119 0.881 43 H 0.156 0.844 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 -5.545 9.558 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 H 0.069 0.931 4 C 0.022 3.978 5 C -0.570 4.570 6 H 0.065 0.935 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.198 1.198 13 C -0.053 4.053 14 N -0.264 5.264 15 C -0.121 4.121 16 C 0.010 3.990 17 H 0.071 0.929 18 C -0.193 4.193 19 C -0.045 4.045 20 C -0.126 4.126 21 C -0.063 4.063 22 C -0.566 4.566 23 S 1.590 4.410 24 C -0.655 4.655 25 O -0.916 6.916 26 C -0.096 4.096 27 C -0.160 4.160 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.000 1.000 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.137 0.863 43 H 0.174 0.826 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.083 0.917 47 H 0.133 0.867 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.367 -6.561 8.916 11.571 hybrid contribution -1.889 1.487 1.533 2.851 sum 1.478 -5.075 10.449 11.710 Atomic orbital electron populations 1.21619 0.95707 1.00617 1.00488 1.21091 0.94812 0.98640 0.95176 0.93104 1.18746 0.95583 0.93050 0.90387 1.21692 1.34204 1.08311 0.92811 0.93498 1.25658 0.95579 0.96014 1.01465 1.70046 1.39858 1.22229 1.23748 0.85800 0.78554 0.78734 0.79981 1.20498 1.20890 1.19753 1.22049 0.87001 0.99821 0.96458 1.61890 1.09346 1.04052 1.51115 1.22436 1.01880 0.89403 0.98382 1.20668 0.96689 0.87837 0.93792 0.92884 1.21840 0.92127 1.02836 1.02528 1.20054 0.95547 0.95144 0.93754 1.21266 0.99265 0.96638 0.95469 1.21181 0.93381 0.91736 1.00052 1.27738 1.11851 1.17618 0.99378 1.68878 0.90648 0.76688 1.04750 1.27747 1.20083 1.09860 1.07761 1.92929 1.83504 1.61636 1.53496 1.21034 0.97103 0.96208 0.95257 1.21205 1.01024 0.93667 1.00082 0.94366 0.93590 0.92418 0.97036 1.00020 0.93128 0.94786 0.92671 0.94742 0.90171 0.92120 0.90609 0.91237 0.92664 0.86290 0.82627 0.85714 0.85606 0.91718 0.86731 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.91 71.98 0.64 -4.02 16 2 C -0.08 -3.11 2.39 -10.79 -0.03 -3.13 16 3 H 0.05 2.05 6.70 -2.39 -0.02 2.04 16 4 C 0.06 2.94 4.39 29.85 0.13 3.07 16 5 C -0.53 -29.02 8.48 25.60 0.22 -28.80 16 6 H 0.05 2.53 7.06 -2.91 -0.02 2.51 16 7 C 0.01 0.61 5.46 84.66 0.46 1.07 16 8 N -0.92 -52.20 13.29 21.45 0.28 -51.91 16 9 Si 0.94 43.21 29.54 68.60 2.03 45.24 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 C 0.07 2.51 4.13 86.30 0.36 2.86 16 14 N -0.54 -16.76 3.42 -901.48 -3.08 -19.84 16 15 C 0.03 0.70 8.90 127.69 1.14 1.84 16 16 C 0.12 3.16 2.28 44.17 0.10 3.26 16 17 H 0.05 1.30 7.94 -2.39 -0.02 1.28 16 18 C -0.14 -3.12 8.80 71.98 0.63 -2.49 16 19 C -0.04 -1.32 3.27 -19.87 -0.07 -1.39 16 20 C -0.11 -3.55 8.84 22.27 0.20 -3.35 16 21 C -0.04 -1.30 9.75 22.27 0.22 -1.08 16 22 C -0.47 -12.99 5.61 22.27 0.12 -12.86 16 23 S 1.39 29.82 14.19 -56.49 -0.80 29.02 16 24 C -0.50 -9.96 10.70 113.37 1.21 -8.75 16 25 O -0.92 -30.27 16.90 -148.98 -2.52 -32.79 16 26 C -0.08 -2.30 9.44 22.27 0.21 -2.09 16 27 C -0.14 -3.97 9.67 22.27 0.22 -3.75 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.81 7.12 -2.38 -0.02 1.79 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.01 0.61 7.02 -2.38 -0.02 0.59 16 32 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 33 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 34 H 0.03 1.03 8.00 -2.39 -0.02 1.01 16 35 H 0.05 2.01 6.32 -2.39 -0.02 1.99 16 36 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.88 6.41 -2.38 -0.02 1.87 16 38 H 0.06 1.76 6.63 -2.39 -0.02 1.74 16 39 H 0.08 1.49 6.42 -2.39 -0.02 1.47 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.44 8.07 -2.39 -0.02 1.42 16 42 H 0.12 4.60 7.34 -2.91 -0.02 4.58 16 43 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 44 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.11 3.51 7.45 -2.91 -0.02 3.48 16 48 H 0.13 3.18 7.99 -2.91 -0.02 3.16 16 Total: -1.00 -71.88 391.63 2.60 -69.29 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.92 Total: 20.61 kcal Atomic # 6 Polarization: -65.38 SS G_CDS: 5.77 Total: -59.62 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: -2.79 Total: -71.75 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -2.52 Total: -32.79 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 29.82 SS G_CDS: -0.80 Total: 29.02 kcal Total: -71.88 2.60 -69.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602483558.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.381 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds