Wall clock time and date at job start Tue Mar 31 2020 13:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47660 * 2 1 4 4 C 1.46499 * 119.99873 * 266.74727 * 3 2 1 5 5 C 1.50698 * 109.46927 * 269.99487 * 4 3 2 6 6 H 1.08008 * 120.00007 * 0.02562 * 5 4 3 7 7 C 1.37869 * 120.00338 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00174 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00527 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46876 * 60.00161 * 9 7 5 11 11 H 1.48494 * 109.47651 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47131 * 300.00456 * 9 7 5 13 13 C 1.34775 * 120.00092 * 86.73961 * 3 2 1 14 14 O 1.21573 * 120.00198 * 185.28692 * 13 3 2 15 15 C 1.47632 * 119.99983 * 5.28228 * 13 3 2 16 16 C 1.39512 * 120.21573 * 253.38921 * 15 13 3 17 17 C 1.37929 * 119.96638 * 179.72235 * 16 15 13 18 18 C 1.38511 * 120.41064 * 0.29889 * 17 16 15 19 19 C 1.38037 * 120.43016 * 0.02562 * 18 17 16 20 20 C 1.39211 * 120.01742 * 359.97438 * 19 18 17 21 21 C 1.48193 * 120.19797 * 179.97438 * 20 19 18 22 22 C 1.39455 * 120.13367 * 69.58088 * 21 20 19 23 23 C 1.37963 * 119.86666 * 179.97438 * 22 21 20 24 24 C 1.38362 * 120.13251 * 0.02562 * 23 22 21 25 25 C 1.38319 * 120.26409 * 0.02562 * 24 23 22 26 26 C 1.38018 * 120.12964 * 359.70117 * 25 24 23 27 27 C 1.50693 * 120.06765 * 180.27943 * 26 25 24 28 28 H 1.09003 * 109.47202 * 300.00448 * 1 2 3 29 29 H 1.09007 * 109.46822 * 59.99671 * 1 2 3 30 30 H 1.08998 * 109.47337 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47202 * 239.99552 * 2 1 3 32 32 H 1.08999 * 109.46685 * 119.99986 * 2 1 3 33 33 H 1.08999 * 109.47408 * 29.99563 * 4 3 2 34 34 H 1.08999 * 109.47395 * 149.99580 * 4 3 2 35 35 H 0.96998 * 120.00377 * 180.02562 * 8 7 5 36 36 H 1.07999 * 120.01237 * 0.02562 * 16 15 13 37 37 H 1.08004 * 119.79099 * 180.28415 * 17 16 15 38 38 H 1.08000 * 119.78617 * 179.97438 * 18 17 16 39 39 H 1.07996 * 119.99109 * 179.97438 * 19 18 17 40 40 H 1.08001 * 120.06203 * 359.95711 * 22 21 20 41 41 H 1.07998 * 119.93715 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.87061 * 179.97438 * 24 23 22 43 43 H 1.08001 * 119.93440 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47272 * 270.27508 * 27 26 25 45 45 H 1.09004 * 109.47179 * 30.27904 * 27 26 25 46 46 H 1.08999 * 109.47334 * 150.27685 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.3306 2.0477 -1.2667 5 6 3.7750 1.8034 -1.6203 6 1 4.3980 1.2105 -0.9670 7 6 4.3008 2.3358 -2.7782 8 7 3.5421 3.0573 -3.5741 9 14 6.0914 2.0335 -3.2163 10 1 6.3280 0.5738 -3.3529 11 1 6.4079 2.7090 -4.5003 12 1 6.9622 2.5778 -2.1434 13 6 2.1806 2.0386 1.1653 14 8 2.4932 3.2134 1.1620 15 6 1.9784 1.3321 2.4457 16 6 0.8410 1.5826 3.2139 17 6 0.6545 0.9155 4.4066 18 6 1.5938 0.0002 4.8523 19 6 2.7284 -0.2555 4.1089 20 6 2.9347 0.4077 2.9024 21 6 4.1516 0.1367 2.1014 22 6 4.3115 -1.0941 1.4654 23 6 5.4464 -1.3403 0.7206 24 6 6.4252 -0.3693 0.6044 25 6 6.2727 0.8529 1.2338 26 6 5.1391 1.1129 1.9769 27 6 4.9717 2.4473 2.6568 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6912 1.6490 -2.0543 34 1 2.1574 3.1191 -1.1658 35 1 3.9119 3.4316 -4.3889 36 1 0.1046 2.2949 2.8723 37 1 -0.2292 1.1082 4.9967 38 1 1.4377 -0.5162 5.7879 39 1 3.4563 -0.9703 4.4633 40 1 3.5484 -1.8530 1.5560 41 1 5.5715 -2.2932 0.2280 42 1 7.3121 -0.5667 0.0207 43 1 7.0403 1.6069 1.1398 44 1 5.4009 2.4016 3.6577 45 1 5.4818 3.2169 2.0775 46 1 3.9111 2.6888 2.7271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930464076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:49 Heat of formation + Delta-G solvation = 12.520961 kcal Electronic energy + Delta-G solvation = -28798.101316 eV Core-core repulsion = 25231.265935 eV Total energy + Delta-G solvation = -3566.835381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35638 -38.46725 -37.74449 -35.22597 -32.94603 -32.68161 -31.91915 -30.98242 -30.03371 -29.01849 -27.03589 -26.45010 -23.95195 -23.24577 -22.92928 -21.94217 -21.34378 -20.46631 -18.67990 -16.98390 -16.51654 -16.34260 -15.66601 -15.46038 -15.29696 -14.82594 -14.67608 -14.27168 -14.04221 -13.69103 -13.28522 -13.17550 -13.08763 -12.91582 -12.70842 -12.54494 -12.20372 -12.00749 -11.90328 -11.76272 -11.55327 -11.42355 -11.17169 -11.16178 -10.87178 -10.72964 -10.68722 -10.55327 -10.44857 -10.07371 -9.55776 -9.00768 -8.87235 -8.71814 -8.37278 -8.35954 -8.09990 -7.57415 -5.98140 -4.00858 1.16843 1.36432 1.76283 1.80760 3.33002 3.35852 3.37724 3.42761 3.73126 4.03061 4.12299 4.49087 4.73813 4.94893 5.01790 5.05348 5.23534 5.27289 5.36381 5.37875 5.41270 5.47927 5.56566 5.68677 5.72155 5.82137 5.87536 5.89786 6.00789 6.06988 6.09747 6.14205 6.23366 6.28532 6.34904 6.44620 6.50501 6.54226 6.58440 6.71100 6.76564 6.86881 6.94468 7.04374 7.12934 7.37369 7.49846 7.61729 7.99991 8.31040 8.45823 8.96181 9.12580 9.63455 11.10359 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012792 B = 0.006222 C = 0.005139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.339144 B = 4499.299744 C = 5447.418764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.581 5.581 4 C 0.246 3.754 5 C -0.516 4.516 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.554 3.446 14 O -0.534 6.534 15 C -0.094 4.094 16 C -0.089 4.089 17 C -0.123 4.123 18 C -0.114 4.114 19 C -0.111 4.111 20 C -0.011 4.011 21 C -0.061 4.061 22 C -0.096 4.096 23 C -0.125 4.125 24 C -0.107 4.107 25 C -0.112 4.112 26 C -0.045 4.045 27 C -0.125 4.125 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -10.113 14.450 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.311 5.311 4 C 0.127 3.873 5 C -0.555 4.555 6 H 0.082 0.918 7 C -0.139 4.139 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.340 3.660 14 O -0.412 6.412 15 C -0.097 4.097 16 C -0.107 4.107 17 C -0.141 4.141 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.012 4.012 21 C -0.061 4.061 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.045 4.045 27 C -0.181 4.181 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.277 -9.378 14.213 17.179 hybrid contribution 0.990 -0.178 -0.554 1.149 sum -1.287 -9.556 13.658 16.719 Atomic orbital electron populations 1.22222 0.96922 1.01335 1.02169 1.21456 0.93272 0.84383 1.02729 1.48111 1.62455 1.12979 1.07553 1.19299 0.96005 0.93995 0.77990 1.21446 0.95686 1.32235 1.06126 0.91826 1.24879 0.97610 0.95142 0.96294 1.69927 1.35895 1.34724 1.13191 0.86680 0.85670 0.78332 0.77587 1.20208 1.21413 1.20116 1.18003 0.78084 0.86511 0.83407 1.90759 1.48020 1.15548 1.86916 1.20324 0.95420 0.97238 0.96710 1.21081 0.96339 0.98990 0.94332 1.21050 0.99539 0.97199 0.96270 1.21106 0.94171 0.98271 0.99618 1.21116 0.97863 0.99989 0.93924 1.18739 0.93178 0.94888 0.94376 1.18479 0.93431 0.94577 0.99599 1.20975 0.97393 0.95691 0.97316 1.20886 0.94355 0.99368 0.99671 1.21105 0.99072 0.93759 0.98529 1.20902 0.97614 0.96927 0.97593 1.19872 0.93154 0.94990 0.96510 1.20996 1.04770 0.93556 0.98806 0.93044 0.92190 0.92302 0.90150 0.91512 0.95164 0.93891 0.92870 0.85657 0.85838 0.85950 0.85713 0.86423 0.86355 0.86603 0.86373 0.92207 0.91385 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.22 37.16 0.38 -2.09 16 2 C 0.11 1.85 5.85 -4.04 -0.02 1.82 16 3 N -0.58 -12.55 2.46 -176.26 -0.43 -12.98 16 4 C 0.25 6.46 5.19 -5.19 -0.03 6.44 16 5 C -0.52 -14.44 9.39 -34.44 -0.32 -14.76 16 6 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.55 11.88 5.19 -12.43 -0.06 11.81 16 14 O -0.53 -13.53 14.96 5.30 0.08 -13.45 16 15 C -0.09 -1.60 3.28 -104.69 -0.34 -1.95 16 16 C -0.09 -1.28 9.46 -39.22 -0.37 -1.65 16 17 C -0.12 -1.39 10.02 -39.59 -0.40 -1.79 16 18 C -0.11 -1.22 10.02 -39.55 -0.40 -1.62 16 19 C -0.11 -1.38 9.76 -39.29 -0.38 -1.76 16 20 C -0.01 -0.17 3.46 -104.55 -0.36 -0.54 16 21 C -0.06 -1.02 4.23 -104.91 -0.44 -1.47 16 22 C -0.10 -1.47 8.65 -39.23 -0.34 -1.81 16 23 C -0.12 -1.92 10.03 -39.64 -0.40 -2.31 16 24 C -0.11 -1.76 10.04 -39.51 -0.40 -2.16 16 25 C -0.11 -2.00 9.69 -39.63 -0.38 -2.39 16 26 C -0.05 -0.83 5.54 -104.27 -0.58 -1.40 16 27 C -0.12 -2.25 9.19 36.00 0.33 -1.92 16 28 H 0.05 0.73 7.82 -51.93 -0.41 0.33 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 32 H 0.07 1.07 4.25 -51.93 -0.22 0.85 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.53 7.78 -52.49 -0.41 1.13 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 46 H 0.09 1.70 3.88 -51.93 -0.20 1.50 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -32.70 378.47 -10.20 -42.90 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.65 Total: 4.83 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -4.62 Total: -17.87 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.30 Total: -39.05 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.70 -10.20 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930464076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.422 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds